Cow genome map
| Conread name: | LyN1-MLN01A100079 |
| Conread position: | 11-504 |
| Cow position: | chr17:18199994-18200488 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 11-511 |
| Cow position: | chr17:16668898-16668389 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 11-869 |
| Cow position: | chr17:3606780-3605939 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 11-870 |
| Cow position: | chr17:8210590-8211463 (view UCSC Genome Browser custom track) |
| Alignm length: | 887 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 148 |
| Conread position: | 13-349 |
| Cow position: | chr17:14936000-14935660 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 13-388 |
| Cow position: | chr17:22236886-22237274 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 13-404 |
| Cow position: | chr17:23706901-23707281 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 13-630 |
| Cow position: | chr17:2032174-2032788 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 400 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 98 |
| Conread position: | 13-870 |
| Cow position: | chr17:27792832-27791972 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 15-853 |
| Cow position: | chr17:7562015-7561184 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 16-276 |
| Cow position: | chr17:39050382-39050647 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-299 |
| Cow position: | chr17:36283975-36284264 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 16-319 |
| Cow position: | chr17:29302716-29303023 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 16-322 |
| Cow position: | chr17:15341282-15340980 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 16-350 |
| Cow position: | chr17:22561850-22562183 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 89 |
| Conread position: | 16-362 |
| Cow position: | chr17:14896905-14897254 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 16-390 |
| Cow position: | chr17:19216764-19216391 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 16-454 |
| Cow position: | chr17:28026552-28026108 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 160 |
| Conread position: | 16-475 |
| Cow position: | chr17:34574698-34575162 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-486 |
| Cow position: | chr17:17257459-17257934 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-487 |
| Cow position: | chr17:2554320-2553845 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-498 |
| Cow position: | chr17:7940874-7940382 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 87 |
| Conread position: | 16-503 |
| Cow position: | chr17:14262404-14261910 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 16-503 |
| Cow position: | chr17:21769170-21768681 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-521 |
| Cow position: | chr17:9230601-9230094 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 16-605 |
| Cow position: | chr17:19980184-19979587 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-612 |
| Cow position: | chr17:24784113-24784716 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-643 |
| Cow position: | chr17:136581-137226 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-652 |
| Cow position: | chr17:33283392-33282758 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 403 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 86 |
| Conread position: | 16-661 |
| Cow position: | chr17:605116-604463 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 426 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 16-837 |
| Cow position: | chr17:1882214-1883029 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 123 |
| Conread position: | 16-850 |
| Cow position: | chr17:14215084-14214249 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 87 |
| Conread position: | 16-850 |
| Cow position: | chr17:15327232-15328062 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 159 |
| Conread position: | 16-850 |
| Cow position: | chr17:18124987-18124150 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 16-861 |
| Cow position: | chr17:18593173-18594027 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 16-868 |
| Cow position: | chr17:5307798-5306931 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-868 |
| Cow position: | chr17:15710052-15709194 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-869 |
| Cow position: | chr17:6261803-6262657 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-870 |
| Cow position: | chr17:1655803-1654960 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 16-870 |
| Cow position: | chr17:2175917-2176784 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 16-870 |
| Cow position: | chr17:6070484-6071336 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr17:14241759-14242635 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 16-870 |
| Cow position: | chr17:15852648-15853531 (view UCSC Genome Browser custom track) |
| Alignm length: | 891 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr17:16856160-16855292 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 16-870 |
| Cow position: | chr17:22107705-22106834 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr17:29826024-29825160 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 84 |
| Conread position: | 17-310 |
| Cow position: | chr17:1537624-1537324 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 24-694 |
| Cow position: | chr17:21419896-21420572 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 423 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 45-377 |
| Cow position: | chr17:26347285-26346957 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 115-870 |
| Cow position: | chr17:2245994-2245255 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 47 |
| Conread position: | 154-520 |
| Cow position: | chr17:14909172-14908826 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 120, 25 |
| Conread position: | 203-728 |
| Cow position: | chr17:16903019-16903540 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 85 |
| Conread position: | 278-870 |
| Cow position: | chr17:18100874-18100274 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 34 |
| Conread position: | 281-493 |
| Cow position: | chr17:23281110-23280903 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 301-830 |
| Cow position: | chr17:16050345-16049816 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 109 |
| Conread position: | 321-853 |
| Cow position: | chr17:15340475-15339964 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 27 |
Show alignments to all cow chromosomes.