Cow genome map

Conread name: LyN1-MLN01A100079

Conread position: 6-315
Cow position: chr2:43810941-43811251 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 112

Conread position: 6-369
Cow position: chr2:12987719-12988071 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 253
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 60, 153

Conread position: 11-263
Cow position: chr2:5592866-5593124 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 60, 157

Conread position: 11-342
Cow position: chr2:26871654-26871993 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 60, 158

Conread position: 11-454
Cow position: chr2:39691458-39691895 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 11

Conread position: 11-773
Cow position: chr2:56800836-56800082 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 474
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 60, 157

Conread position: 11-870
Cow position: chr2:10184621-10183754 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 5

Conread position: 11-870
Cow position: chr2:53331403-53332277 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 149

Conread position: 12-478
Cow position: chr2:14824628-14825086 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 156

Conread position: 12-489
Cow position: chr2:30128253-30127764 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 150

Conread position: 12-531
Cow position: chr2:55477920-55477418 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 86

Conread position: 13-373
Cow position: chr2:11719401-11719758 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 231
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 83, 60

Conread position: 13-563
Cow position: chr2:2479500-2478970 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 349
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 177, 45

Conread position: 13-712
Cow position: chr2:77209865-77210543 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 91

Conread position: 13-721
Cow position: chr2:56896850-56896145 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 125

Conread position: 13-852
Cow position: chr2:78764266-78765115 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 68

Conread position: 13-870
Cow position: chr2:25767624-25768479 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 535
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 54, 87

Conread position: 14-853
Cow position: chr2:7327578-7328400 (view UCSC Genome Browser custom track)
Alignm length: 859
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 56

Conread position: 15-850
Cow position: chr2:41155801-41156631 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 99

Conread position: 16-270
Cow position: chr2:24833486-24833745 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 88

Conread position: 16-284
Cow position: chr2:48815875-48816149 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 142

Conread position: 16-285
Cow position: chr2:5888125-5887849 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 53, 87

Conread position: 16-308
Cow position: chr2:59423118-59423415 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 57, 143

Conread position: 16-350
Cow position: chr2:32640550-32640890 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 237
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 49, 143

Conread position: 16-356
Cow position: chr2:281084-280740 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 51, 142

Conread position: 16-368
Cow position: chr2:34500809-34500452 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 57, 143

Conread position: 16-372
Cow position: chr2:363459-363098 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 143

Conread position: 16-390
Cow position: chr2:11157515-11157142 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 16-393
Cow position: chr2:6640414-6640795 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-405
Cow position: chr2:60674218-60673824 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 141

Conread position: 16-424
Cow position: chr2:72689211-72689620 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 55, 143

Conread position: 16-465
Cow position: chr2:67189201-67189653 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 299
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 57, 155

Conread position: 16-478
Cow position: chr2:24471027-24470562 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-478
Cow position: chr2:80291157-80290691 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 98

Conread position: 16-481
Cow position: chr2:52064366-52064834 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 140

Conread position: 16-492
Cow position: chr2:81258788-81259261 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 319
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 126

Conread position: 16-493
Cow position: chr2:32064439-32063961 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 143

Conread position: 16-516
Cow position: chr2:246286-245785 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 326
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 55, 138

Conread position: 16-520
Cow position: chr2:25027696-25027188 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 163

Conread position: 16-559
Cow position: chr2:46908842-46908293 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 155

Conread position: 16-643
Cow position: chr2:974763-974124 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 143

Conread position: 16-666
Cow position: chr2:4932580-4931918 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 145

Conread position: 16-670
Cow position: chr2:29217325-29217995 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 145

Conread position: 16-717
Cow position: chr2:4451976-4452693 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 91

Conread position: 16-783
Cow position: chr2:59412125-59411352 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 77

Conread position: 16-789
Cow position: chr2:34471253-34470481 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 489
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 57, 142

Conread position: 16-817
Cow position: chr2:56754868-56754080 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 486
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 56, 116

Conread position: 16-827
Cow position: chr2:10879715-10880523 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 87

Conread position: 16-836
Cow position: chr2:3838906-3839705 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 27

Conread position: 16-841
Cow position: chr2:32410631-32409798 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 139

Conread position: 16-850
Cow position: chr2:12478651-12477808 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 108

Conread position: 16-850
Cow position: chr2:32433723-32432883 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 522
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 55, 146

Conread position: 16-850
Cow position: chr2:52620396-52621230 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 145

Conread position: 16-853
Cow position: chr2:24045896-24045045 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 102

Conread position: 16-861
Cow position: chr2:39118225-39119067 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-868
Cow position: chr2:9957461-9956598 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-868
Cow position: chr2:9963461-9962598 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-868
Cow position: chr2:44092980-44093839 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 144

Conread position: 16-869
Cow position: chr2:11688030-11688849 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 529
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 55, 146

Conread position: 16-870
Cow position: chr2:2182661-2181796 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 144

Conread position: 16-870
Cow position: chr2:6005238-6004361 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 359

Conread position: 16-870
Cow position: chr2:10263805-10262933 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr2:13068386-13067531 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 98

Conread position: 16-870
Cow position: chr2:14209223-14208365 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 143

Conread position: 16-870
Cow position: chr2:21983145-21982282 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr2:24927025-24927887 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 144

Conread position: 16-870
Cow position: chr2:25886943-25886080 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 143

Conread position: 16-870
Cow position: chr2:26069386-26068557 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 85

Conread position: 16-870
Cow position: chr2:26886890-26887712 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 85

Conread position: 16-870
Cow position: chr2:42669094-42668232 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-870
Cow position: chr2:43758033-43757168 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 144

Conread position: 16-870
Cow position: chr2:44477219-44478079 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 143

Conread position: 16-870
Cow position: chr2:46183928-46183061 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 163

Conread position: 16-870
Cow position: chr2:50079169-50080038 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 145

Conread position: 16-870
Cow position: chr2:50981539-50980680 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr2:53541547-53542414 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 155

Conread position: 16-870
Cow position: chr2:57337568-57338431 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 141

Conread position: 16-870
Cow position: chr2:65936617-65935772 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 17-402
Cow position: chr2:26904168-26903782 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 142

Conread position: 17-870
Cow position: chr2:45213078-45212211 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 142

Conread position: 23-313
Cow position: chr2:77391781-77392073 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 196
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 121

Conread position: 24-358
Cow position: chr2:34580048-34579719 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 234
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 50, 67

Conread position: 25-870
Cow position: chr2:10467219-10468071 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 95

Conread position: 28-870
Cow position: chr2:28647996-28647151 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 95

Conread position: 38-487
Cow position: chr2:50324845-50325287 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 298
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 37, 71

Conread position: 42-672
Cow position: chr2:49306429-49307053 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 113

Conread position: 45-870
Cow position: chr2:57053204-57054038 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 56

Conread position: 76-548
Cow position: chr2:84756202-84756664 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 113-522
Cow position: chr2:64767132-64766742 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 275, 50

Conread position: 154-870
Cow position: chr2:8120452-8121170 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 217

Conread position: 154-870
Cow position: chr2:53004449-53003730 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 226

Conread position: 158-831
Cow position: chr2:41782400-41783061 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 167-870
Cow position: chr2:28795606-28796319 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 204

Conread position: 187-637
Cow position: chr2:11500766-11501222 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 293
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 374, 151

Conread position: 200-819
Cow position: chr2:54899924-54900518 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 11

Conread position: 237-686
Cow position: chr2:14070589-14070122 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 37

Conread position: 297-845
Cow position: chr2:12285108-12285655 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 351
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 159, 13

Conread position: 298-824
Cow position: chr2:19133947-19133411 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 341
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 110, 73

Conread position: 358-645
Cow position: chr2:24053823-24054116 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 140

Conread position: 451-868
Cow position: chr2:14091725-14092150 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 89

Conread position: 475-831
Cow position: chr2:54426375-54426007 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 486-870
Cow position: chr2:1660539-1660916 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 42, 9

Conread position: 598-853
Cow position: chr2:49184537-49184283 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 112

Conread position: 613-870
Cow position: chr2:3598096-3598350 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 19, 25

Show alignments to all cow chromosomes.