Cow genome map
| Conread name: | LyN1-MLN01A100079 |
| Conread position: | 11-481 |
| Cow position: | chr21:4096910-4097364 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 121 |
| Conread position: | 11-639 |
| Cow position: | chr21:29000172-29000804 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 416 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 11-828 |
| Cow position: | chr21:22751236-22750389 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 530 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 11-853 |
| Cow position: | chr21:4596372-4595565 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 530 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 169 |
| Conread position: | 12-287 |
| Cow position: | chr21:13298804-13299086 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 12-349 |
| Cow position: | chr21:11507844-11508185 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 159 |
| Conread position: | 12-350 |
| Cow position: | chr21:9894380-9894722 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 8, 148 |
| Conread position: | 12-501 |
| Cow position: | chr21:38024334-38024818 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 59, 142 |
| Conread position: | 13-350 |
| Cow position: | chr21:2672050-2671711 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 146 |
| Conread position: | 13-351 |
| Cow position: | chr21:4737227-4736885 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 142 |
| Conread position: | 13-478 |
| Cow position: | chr21:31514082-31513616 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 13-559 |
| Cow position: | chr21:27285682-27286229 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 147 |
| Conread position: | 13-825 |
| Cow position: | chr21:2288312-2289144 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 516 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 88 |
| Conread position: | 15-559 |
| Cow position: | chr21:26634921-26634374 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 16-284 |
| Cow position: | chr21:30563904-30564175 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 16-319 |
| Cow position: | chr21:31640151-31640456 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 16-341 |
| Cow position: | chr21:19612998-19613328 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-373 |
| Cow position: | chr21:28257656-28258013 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 16-444 |
| Cow position: | chr21:4036490-4036918 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 155 |
| Conread position: | 16-477 |
| Cow position: | chr21:34903135-34902680 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 154 |
| Conread position: | 16-481 |
| Cow position: | chr21:27068724-27068255 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-503 |
| Cow position: | chr21:4091575-4092063 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 120 |
| Conread position: | 16-559 |
| Cow position: | chr21:11290926-11291473 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-670 |
| Cow position: | chr21:28987381-28988032 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 16-717 |
| Cow position: | chr21:39225820-39225107 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 16-776 |
| Cow position: | chr21:2879585-2878816 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 16-788 |
| Cow position: | chr21:49092201-49091431 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 502 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 16-809 |
| Cow position: | chr21:37373463-37374270 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 98 |
| Conread position: | 16-849 |
| Cow position: | chr21:2513090-2513932 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-852 |
| Cow position: | chr21:32397814-32396964 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-868 |
| Cow position: | chr21:27149318-27148450 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-868 |
| Cow position: | chr21:41797485-41796619 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 16-870 |
| Cow position: | chr21:1194782-1195642 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-870 |
| Cow position: | chr21:2418443-2419306 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-870 |
| Cow position: | chr21:3781013-3781880 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 144 |
| Conread position: | 16-870 |
| Cow position: | chr21:5019383-5020249 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr21:6967222-6966369 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 120 |
| Conread position: | 16-870 |
| Cow position: | chr21:36375230-36376093 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 16-870 |
| Cow position: | chr21:38019470-38020331 (view UCSC Genome Browser custom track) |
| Alignm length: | 887 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 16-870 |
| Cow position: | chr21:42916045-42916897 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 16-870 |
| Cow position: | chr21:44763719-44762858 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 16-870 |
| Cow position: | chr21:47647574-47648443 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 19-559 |
| Cow position: | chr21:22942856-22943401 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 21-350 |
| Cow position: | chr21:40269427-40269096 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 24-481 |
| Cow position: | chr21:10568940-10569399 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 45, 137 |
| Conread position: | 27-482 |
| Cow position: | chr21:3141450-3140999 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 30-402 |
| Cow position: | chr21:29949712-29949338 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 129 |
| Conread position: | 66-870 |
| Cow position: | chr21:30596789-30595985 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 68 |
| Conread position: | 111-519 |
| Cow position: | chr21:7163653-7163237 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 168-521 |
| Cow position: | chr21:31973566-31973227 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 288, 7 |
| Conread position: | 190-665 |
| Cow position: | chr21:1076693-1077185 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 72 |
| Conread position: | 217-870 |
| Cow position: | chr21:13112943-13112287 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 69 |
| Conread position: | 235-870 |
| Cow position: | chr21:21292010-21291383 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 124 |
| Conread position: | 241-549 |
| Cow position: | chr21:33318036-33317729 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 276, 54 |
| Conread position: | 248-512 |
| Cow position: | chr21:4968232-4967986 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 254-850 |
| Cow position: | chr21:17143156-17143763 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 117 |
| Conread position: | 264-870 |
| Cow position: | chr21:37085634-37086241 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 128 |
| Conread position: | 302-870 |
| Cow position: | chr21:148675-149253 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 76 |
| Conread position: | 314-845 |
| Cow position: | chr21:43642079-43641556 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 343 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 333-853 |
| Cow position: | chr21:26565800-26565285 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 345-827 |
| Cow position: | chr21:44874826-44874346 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 349-850 |
| Cow position: | chr21:40268807-40268310 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 441-769 |
| Cow position: | chr21:45298922-45298587 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 472-870 |
| Cow position: | chr21:404881-404497 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.