Cow genome map
| Conread name: | LyN1-MLN01A100079 |
| Conread position: | 6-633 |
| Cow position: | chr29:7857852-7858481 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 402 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 11-372 |
| Cow position: | chr29:18524651-18524286 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 11-493 |
| Cow position: | chr29:10851801-10852281 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 11-514 |
| Cow position: | chr29:9962486-9962979 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 12-830 |
| Cow position: | chr29:131595-132415 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 160 |
| Conread position: | 12-870 |
| Cow position: | chr29:5398390-5399230 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 547, 17 |
| Conread position: | 12-870 |
| Cow position: | chr29:6933564-6934432 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 12-870 |
| Cow position: | chr29:23978777-23979652 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 159 |
| Conread position: | 13-454 |
| Cow position: | chr29:5959945-5960387 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 13-870 |
| Cow position: | chr29:40500941-40500054 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 144 |
| Conread position: | 16-261 |
| Cow position: | chr29:32542172-32542422 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 16-280 |
| Cow position: | chr29:2692238-2692505 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 16-284 |
| Cow position: | chr29:11002447-11002718 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 110 |
| Conread position: | 16-316 |
| Cow position: | chr29:34797730-34797423 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 50, 142 |
| Conread position: | 16-318 |
| Cow position: | chr29:31122910-31123216 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 16-339 |
| Cow position: | chr29:35003341-35003015 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 144 |
| Conread position: | 16-349 |
| Cow position: | chr29:5237094-5237428 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-350 |
| Cow position: | chr29:17152398-17152734 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 39, 149 |
| Conread position: | 16-357 |
| Cow position: | chr29:1477236-1477587 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 55, 154 |
| Conread position: | 16-390 |
| Cow position: | chr29:10022253-10021875 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 16-503 |
| Cow position: | chr29:6873797-6873307 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 326 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 16-516 |
| Cow position: | chr29:40470497-40470988 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 16-559 |
| Cow position: | chr29:15260917-15260369 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-736 |
| Cow position: | chr29:13922579-13923313 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-776 |
| Cow position: | chr29:5784885-5785660 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 16-844 |
| Cow position: | chr29:107145-107969 (view UCSC Genome Browser custom track) |
| Alignm length: | 845 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 16-850 |
| Cow position: | chr29:17407204-17408050 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 16-850 |
| Cow position: | chr29:32961391-32962236 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 16-851 |
| Cow position: | chr29:7846467-7847311 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 138 |
| Conread position: | 16-868 |
| Cow position: | chr29:2101918-2102786 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-868 |
| Cow position: | chr29:13584298-13585155 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 16-868 |
| Cow position: | chr29:19526213-19525350 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-868 |
| Cow position: | chr29:32557673-32556805 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-868 |
| Cow position: | chr29:39425066-39424199 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 16-869 |
| Cow position: | chr29:15967481-15966614 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:46383-45519 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:409183-408321 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:608552-607696 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 16-870 |
| Cow position: | chr29:2464798-2463929 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:2839262-2838395 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 16-870 |
| Cow position: | chr29:6263928-6263067 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 16-870 |
| Cow position: | chr29:7429043-7428172 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 16-870 |
| Cow position: | chr29:8625113-8624255 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:10645332-10644470 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 16-870 |
| Cow position: | chr29:13018769-13019626 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 155 |
| Conread position: | 16-870 |
| Cow position: | chr29:14209472-14208615 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 16-870 |
| Cow position: | chr29:15996306-15995441 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 164 |
| Conread position: | 16-870 |
| Cow position: | chr29:16346279-16347147 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:19621188-19620327 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 16-870 |
| Cow position: | chr29:19889652-19890496 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:20253247-20254108 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:25930440-25929578 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 16-870 |
| Cow position: | chr29:26162758-26161894 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr29:31183481-31184317 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 16-870 |
| Cow position: | chr29:39077638-39076777 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 16-870 |
| Cow position: | chr29:45206586-45207453 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 21-868 |
| Cow position: | chr29:13898743-13899606 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 24-868 |
| Cow position: | chr29:31095505-31094647 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 146 |
| Conread position: | 27-407 |
| Cow position: | chr29:25991956-25991575 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 59-718 |
| Cow position: | chr29:4518027-4518687 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 74-481 |
| Cow position: | chr29:5341119-5340724 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 112-460 |
| Cow position: | chr29:37309016-37308670 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 112-870 |
| Cow position: | chr29:19656080-19656841 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 39 |
| Conread position: | 123-517 |
| Cow position: | chr29:21512990-21512599 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 155, 48 |
| Conread position: | 123-831 |
| Cow position: | chr29:10249480-10248781 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 148-531 |
| Cow position: | chr29:323667-323274 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 334 |
| Conread position: | 167-718 |
| Cow position: | chr29:530165-529609 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 30 |
| Conread position: | 194-556 |
| Cow position: | chr29:21301038-21301397 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 286, 9 |
| Conread position: | 209-870 |
| Cow position: | chr29:45461504-45462174 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 162 |
| Conread position: | 225-817 |
| Cow position: | chr29:39049292-39048713 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 70 |
| Conread position: | 314-699 |
| Cow position: | chr29:33005595-33005980 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 350-579 |
| Cow position: | chr29:44402728-44402962 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 211, 56 |
| Conread position: | 363-870 |
| Cow position: | chr29:5239816-5240335 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 93, 101 |
| Conread position: | 383-556 |
| Cow position: | chr29:36731041-36731216 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 469-861 |
| Cow position: | chr29:27304175-27304569 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 181 |
Show alignments to all cow chromosomes.