Cow genome map
| Conread name: | LyN1-MLN01A100079 |
| Conread position: | 11-323 |
| Cow position: | chr5:22552862-22553171 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 11-481 |
| Cow position: | chr5:4387114-4387582 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 318 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 11-870 |
| Cow position: | chr5:4964481-4963618 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 143 |
| Conread position: | 11-870 |
| Cow position: | chr5:54695910-54695041 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 148 |
| Conread position: | 12-444 |
| Cow position: | chr5:18886663-18886242 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 12-476 |
| Cow position: | chr5:55391477-55391942 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 12-479 |
| Cow position: | chr5:54859205-54858737 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 12-501 |
| Cow position: | chr5:57870997-57870519 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 12-694 |
| Cow position: | chr5:54823222-54822548 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 12-773 |
| Cow position: | chr5:50605444-50604668 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 164 |
| Conread position: | 13-431 |
| Cow position: | chr5:28024602-28025013 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 52, 92 |
| Conread position: | 15-322 |
| Cow position: | chr5:5665701-5665396 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 145 |
| Conread position: | 16-319 |
| Cow position: | chr5:76096955-76097254 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-350 |
| Cow position: | chr5:414970-414631 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 16-350 |
| Cow position: | chr5:24296502-24296837 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-350 |
| Cow position: | chr5:59284203-59284540 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 16-363 |
| Cow position: | chr5:16102173-16101830 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 16-365 |
| Cow position: | chr5:9056555-9056909 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-368 |
| Cow position: | chr5:13407491-13407848 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-372 |
| Cow position: | chr5:41066074-41066435 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-398 |
| Cow position: | chr5:3822788-3823167 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 106 |
| Conread position: | 16-432 |
| Cow position: | chr5:40130698-40130278 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-452 |
| Cow position: | chr5:32774671-32775111 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-466 |
| Cow position: | chr5:2916329-2916777 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 159 |
| Conread position: | 16-475 |
| Cow position: | chr5:4756282-4755820 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-476 |
| Cow position: | chr5:10774362-10773901 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 141 |
| Conread position: | 16-477 |
| Cow position: | chr5:59062536-59063001 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-478 |
| Cow position: | chr5:21523920-21523447 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 53, 86 |
| Conread position: | 16-503 |
| Cow position: | chr5:12730818-12730325 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 16-559 |
| Cow position: | chr5:27489856-27490381 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 100, 70 |
| Conread position: | 16-605 |
| Cow position: | chr5:58190862-58190261 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-612 |
| Cow position: | chr5:29031165-29031774 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 16-809 |
| Cow position: | chr5:49131107-49131896 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 16-850 |
| Cow position: | chr5:5926069-5925219 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-850 |
| Cow position: | chr5:10920737-10921584 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 16-850 |
| Cow position: | chr5:18120581-18119738 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 16-860 |
| Cow position: | chr5:59145265-59146125 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 155 |
| Conread position: | 16-861 |
| Cow position: | chr5:26077289-26076450 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 55 |
| Conread position: | 16-868 |
| Cow position: | chr5:23958429-23957568 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 98 |
| Conread position: | 16-868 |
| Cow position: | chr5:54929020-54928161 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 16-870 |
| Cow position: | chr5:1340028-1339162 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr5:3502225-3501367 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 16-870 |
| Cow position: | chr5:7275726-7276594 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 16-870 |
| Cow position: | chr5:10854922-10854067 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr5:14544404-14543540 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 89 |
| Conread position: | 16-870 |
| Cow position: | chr5:24100543-24101410 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr5:30581231-30582095 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 16-870 |
| Cow position: | chr5:37734244-37735135 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 16-870 |
| Cow position: | chr5:40348387-40347520 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 16-870 |
| Cow position: | chr5:49222605-49221732 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 160 |
| Conread position: | 16-870 |
| Cow position: | chr5:58197918-58198770 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr5:64780112-64779247 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 17-478 |
| Cow position: | chr5:43988961-43989430 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 91 |
| Conread position: | 17-772 |
| Cow position: | chr5:69623482-69624222 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 18-402 |
| Cow position: | chr5:4683902-4683515 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 21-549 |
| Cow position: | chr5:28344859-28345395 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 21-673 |
| Cow position: | chr5:62203471-62204122 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 417 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 23-284 |
| Cow position: | chr5:21221829-21221565 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 24-828 |
| Cow position: | chr5:63403499-63402699 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 24-870 |
| Cow position: | chr5:54787213-54786347 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 155 |
| Conread position: | 30-270 |
| Cow position: | chr5:28332628-28332384 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 72-503 |
| Cow position: | chr5:21117675-21118094 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 74-870 |
| Cow position: | chr5:44710422-44709619 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 76-729 |
| Cow position: | chr5:5306683-5307355 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 105-831 |
| Cow position: | chr5:24219147-24219862 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 108-870 |
| Cow position: | chr5:47341716-47342474 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 55 |
| Conread position: | 134-501 |
| Cow position: | chr5:26624607-26624246 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 15 |
| Conread position: | 143-651 |
| Cow position: | chr5:72739639-72739130 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 337 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 145-868 |
| Cow position: | chr5:53943864-53944586 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 8 |
| Conread position: | 154-832 |
| Cow position: | chr5:73486886-73486200 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 217 |
| Conread position: | 154-870 |
| Cow position: | chr5:3788263-3788988 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 55 |
| Conread position: | 168-644 |
| Cow position: | chr5:46649190-46649675 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 207-870 |
| Cow position: | chr5:27550372-27549699 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 149 |
| Conread position: | 269-529 |
| Cow position: | chr5:62415309-62415567 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 125, 48 |
| Conread position: | 277-557 |
| Cow position: | chr5:5391681-5391951 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 169, 50 |
| Conread position: | 278-868 |
| Cow position: | chr5:49155264-49154679 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 30 |
| Conread position: | 294-837 |
| Cow position: | chr5:54621803-54622349 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 347 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 327-853 |
| Cow position: | chr5:10103559-10104096 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 339-870 |
| Cow position: | chr5:49815754-49816294 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 20 |
| Conread position: | 354-820 |
| Cow position: | chr5:23352980-23353456 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 301 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 374-734 |
| Cow position: | chr5:60734071-60734435 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 400-736 |
| Cow position: | chr5:67621512-67621847 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 423-647 |
| Cow position: | chr5:8392601-8392827 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 72 |
Show alignments to all cow chromosomes.