Cow genome map

Conread name: LyN1-MLN01A100079

Conread position: 5-870
Cow position: chr6:16767815-16766938 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 101

Conread position: 11-724
Cow position: chr6:66746393-66747132 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 472
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 60, 81

Conread position: 11-824
Cow position: chr6:67266284-67267122 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 81

Conread position: 11-869
Cow position: chr6:7941744-7940892 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 624
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 96

Conread position: 12-474
Cow position: chr6:1107201-1106739 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 307
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 149

Conread position: 12-870
Cow position: chr6:11723167-11722296 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 87

Conread position: 13-519
Cow position: chr6:64813984-64813491 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 94

Conread position: 13-837
Cow position: chr6:40317612-40318456 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 147

Conread position: 13-844
Cow position: chr6:37386612-37387454 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 150

Conread position: 16-260
Cow position: chr6:66388802-66388553 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 143

Conread position: 16-270
Cow position: chr6:31913653-31913912 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 143

Conread position: 16-284
Cow position: chr6:55785674-55785947 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 143

Conread position: 16-325
Cow position: chr6:32632853-32633167 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 55, 143

Conread position: 16-338
Cow position: chr6:21890288-21890610 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 143

Conread position: 16-339
Cow position: chr6:46479162-46479490 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 55, 143

Conread position: 16-386
Cow position: chr6:15895760-15895389 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 55, 11

Conread position: 16-397
Cow position: chr6:27171617-27171990 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 227
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 143

Conread position: 16-402
Cow position: chr6:59618119-59618501 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 51, 155

Conread position: 16-405
Cow position: chr6:41229478-41229868 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-434
Cow position: chr6:65843645-65844076 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 290
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 53, 155

Conread position: 16-477
Cow position: chr6:33809670-33810135 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 137

Conread position: 16-481
Cow position: chr6:704251-704717 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 35

Conread position: 16-481
Cow position: chr6:17048348-17048808 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 98

Conread position: 16-481
Cow position: chr6:51091394-51091866 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-486
Cow position: chr6:1408617-1408143 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 144

Conread position: 16-487
Cow position: chr6:31587223-31586755 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 110

Conread position: 16-493
Cow position: chr6:1820590-1820114 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 155

Conread position: 16-493
Cow position: chr6:30272858-30272375 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-493
Cow position: chr6:44148512-44148038 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 319
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 55, 119

Conread position: 16-531
Cow position: chr6:18464229-18463728 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 26

Conread position: 16-618
Cow position: chr6:2556679-2557296 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 142

Conread position: 16-670
Cow position: chr6:50486767-50486094 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 146

Conread position: 16-670
Cow position: chr6:65849874-65849210 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 430
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 55, 76

Conread position: 16-679
Cow position: chr6:16982765-16982086 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 163

Conread position: 16-718
Cow position: chr6:25216336-25217047 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-810
Cow position: chr6:33465005-33465802 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 138

Conread position: 16-819
Cow position: chr6:18913445-18912626 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 16-820
Cow position: chr6:51716577-51717395 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 98

Conread position: 16-827
Cow position: chr6:60402768-60401951 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 102

Conread position: 16-844
Cow position: chr6:35874678-35873838 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-850
Cow position: chr6:47041154-47040330 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 111

Conread position: 16-868
Cow position: chr6:12664283-12663418 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 91

Conread position: 16-868
Cow position: chr6:19104875-19104011 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 138

Conread position: 16-868
Cow position: chr6:20352059-20351192 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-868
Cow position: chr6:28489535-28488671 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 123

Conread position: 16-869
Cow position: chr6:64718354-64719216 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 155

Conread position: 16-870
Cow position: chr6:183504-182641 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr6:3151266-3152117 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 143

Conread position: 16-870
Cow position: chr6:3486364-3485499 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 143

Conread position: 16-870
Cow position: chr6:4509615-4510423 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 66

Conread position: 16-870
Cow position: chr6:5947747-5946877 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 78

Conread position: 16-870
Cow position: chr6:7139302-7138441 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 86

Conread position: 16-870
Cow position: chr6:13309348-13308486 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-870
Cow position: chr6:15139135-15138267 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr6:17596257-17595386 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 161

Conread position: 16-870
Cow position: chr6:18752138-18751291 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 10

Conread position: 16-870
Cow position: chr6:25791660-25790800 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr6:27474465-27475311 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 70

Conread position: 16-870
Cow position: chr6:28134968-28135833 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 143

Conread position: 16-870
Cow position: chr6:38874624-38873759 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 144

Conread position: 16-870
Cow position: chr6:39332495-39331632 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 144

Conread position: 16-870
Cow position: chr6:39911367-39912224 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 74

Conread position: 16-870
Cow position: chr6:40974217-40975085 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 142

Conread position: 16-870
Cow position: chr6:43619769-43620630 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 16-870
Cow position: chr6:44018795-44017928 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr6:51732115-51732981 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 143

Conread position: 16-870
Cow position: chr6:55237724-55238595 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 154

Conread position: 17-351
Cow position: chr6:14081586-14081929 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 229
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 145

Conread position: 17-837
Cow position: chr6:11870896-11870065 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 137

Conread position: 18-776
Cow position: chr6:38273616-38274376 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 83

Conread position: 21-870
Cow position: chr6:1535749-1536604 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 47

Conread position: 24-861
Cow position: chr6:7160857-7161673 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 77

Conread position: 24-870
Cow position: chr6:3887468-3886607 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 134

Conread position: 25-239
Cow position: chr6:40128496-40128715 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 101

Conread position: 29-870
Cow position: chr6:49527-48673 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 130

Conread position: 30-620
Cow position: chr6:6094283-6094880 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 129

Conread position: 46-673
Cow position: chr6:6122229-6121605 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 408
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 19, 111

Conread position: 73-776
Cow position: chr6:50655070-50655777 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 22

Conread position: 80-870
Cow position: chr6:36530395-36531180 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 11

Conread position: 82-870
Cow position: chr6:6438924-6439708 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 12

Conread position: 87-870
Cow position: chr6:24241403-24242190 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 12

Conread position: 172-870
Cow position: chr6:916236-916942 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 199

Conread position: 181-850
Cow position: chr6:21833437-21832779 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 35

Conread position: 226-519
Cow position: chr6:15153474-15153761 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 161, 46

Conread position: 235-868
Cow position: chr6:60378417-60379060 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 136

Conread position: 327-870
Cow position: chr6:35723758-35724294 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 339
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 137

Conread position: 328-850
Cow position: chr6:66561877-66562406 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 338
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 128, 43

Show alignments to all cow chromosomes.