Cow genome map

Conread name: LyN1-MLN01A120092

Conread position: 1-137
Cow position: chr15:13871292-13871428 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 132

Conread position: 1-174
Cow position: chr15:11598587-11598414 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 132

Conread position: 1-207
Cow position: chr15:55728-55934 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 18, 132

Conread position: 1-247
Cow position: chr15:22204586-22204340 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-344
Cow position: chr15:44828342-44828687 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 97

Conread position: 1-355
Cow position: chr15:35734984-35735337 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 17

Conread position: 1-374
Cow position: chr15:17039725-17039358 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-374
Cow position: chr15:19738526-19738154 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-374
Cow position: chr15:42936241-42936613 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 105

Conread position: 1-380
Cow position: chr15:444136-444514 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-380
Cow position: chr15:2011611-2011987 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 42

Conread position: 1-380
Cow position: chr15:3010324-3009945 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 1-380
Cow position: chr15:4384802-4385173 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 93

Conread position: 1-380
Cow position: chr15:7836771-7837149 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 97

Conread position: 1-380
Cow position: chr15:15347593-15347214 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-380
Cow position: chr15:18268460-18268081 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-380
Cow position: chr15:20748943-20749321 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 98

Conread position: 1-380
Cow position: chr15:31358430-31358791 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-381
Cow position: chr15:4795208-4795583 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 17

Conread position: 1-381
Cow position: chr15:4961172-4961534 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 54

Conread position: 1-381
Cow position: chr15:8099015-8099394 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 98

Conread position: 1-388
Cow position: chr15:53338566-53338937 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 76

Conread position: 1-393
Cow position: chr15:690319-690708 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 1-393
Cow position: chr15:2076176-2076566 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-393
Cow position: chr15:4170166-4169781 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-393
Cow position: chr15:4670946-4671347 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 135

Conread position: 1-393
Cow position: chr15:7233839-7234221 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 98

Conread position: 1-393
Cow position: chr15:7522961-7522575 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 125

Conread position: 1-393
Cow position: chr15:18576251-18576632 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-393
Cow position: chr15:24793576-24793965 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 77

Conread position: 1-393
Cow position: chr15:35747829-35748212 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 1-393
Cow position: chr15:36648439-36648826 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-395
Cow position: chr15:25789440-25789048 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 9

Conread position: 1-410
Cow position: chr15:6078261-6078674 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 17

Conread position: 1-415
Cow position: chr15:8749956-8750368 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 17

Conread position: 1-420
Cow position: chr15:12421639-12421220 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-425
Cow position: chr15:1763619-1764041 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 132

Conread position: 1-425
Cow position: chr15:3037983-3037559 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 1-425
Cow position: chr15:4649364-4649779 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 77

Conread position: 1-425
Cow position: chr15:37392028-37392444 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-431
Cow position: chr15:1519622-1519186 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-431
Cow position: chr15:1834933-1834498 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-431
Cow position: chr15:4195990-4196426 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-431
Cow position: chr15:28490614-28490177 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-431
Cow position: chr15:29009370-29009803 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-431
Cow position: chr15:36970451-36970888 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-431
Cow position: chr15:50124412-50123978 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-434
Cow position: chr15:2648129-2647689 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-443
Cow position: chr15:1781781-1782232 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-449
Cow position: chr15:51671885-51672324 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 15

Conread position: 1-481
Cow position: chr15:324473-324941 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 1-498
Cow position: chr15:35648688-35648219 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-502
Cow position: chr15:36642153-36642636 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 40

Conread position: 3-393
Cow position: chr15:21961036-21961426 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 132

Conread position: 3-515
Cow position: chr15:8408092-8408593 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 42

Conread position: 4-253
Cow position: chr15:13428569-13428818 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 17, 129

Conread position: 4-393
Cow position: chr15:7544410-7544800 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 131

Conread position: 4-425
Cow position: chr15:4733391-4733811 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 76

Conread position: 4-431
Cow position: chr15:41365710-41366133 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 122

Conread position: 4-479
Cow position: chr15:40104998-40105465 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 76

Conread position: 4-508
Cow position: chr15:15266115-15265628 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 31

Conread position: 5-380
Cow position: chr15:42320885-42320515 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 52

Conread position: 5-388
Cow position: chr15:6472379-6472003 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 128

Conread position: 6-347
Cow position: chr15:3261875-3261543 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 128

Conread position: 6-425
Cow position: chr15:4681762-4682182 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 134

Conread position: 6-510
Cow position: chr15:11624449-11624939 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 61

Conread position: 7-479
Cow position: chr15:17787624-17787164 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 50

Conread position: 7-480
Cow position: chr15:12614600-12615066 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 132

Conread position: 9-380
Cow position: chr15:21666211-21665841 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 117

Conread position: 23-393
Cow position: chr15:7922091-7921724 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 24-380
Cow position: chr15:4811875-4812224 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 21

Conread position: 24-425
Cow position: chr15:17291990-17292389 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 112

Conread position: 37-380
Cow position: chr15:17080639-17080296 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 27

Conread position: 49-478
Cow position: chr15:24715806-24716220 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 46

Conread position: 67-478
Cow position: chr15:21448895-21449311 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 70

Conread position: 86-478
Cow position: chr15:1236933-1237320 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 88-425
Cow position: chr15:17271783-17271443 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 42

Conread position: 90-431
Cow position: chr15:50146695-50147042 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 46

Conread position: 104-446
Cow position: chr15:11299179-11298846 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 172, 21

Conread position: 116-391
Cow position: chr15:6370135-6369863 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 120-480
Cow position: chr15:36627025-36626666 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 14

Conread position: 134-393
Cow position: chr15:10787470-10787210 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 136-431
Cow position: chr15:7934012-7934292 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 247, 64

Conread position: 142-419
Cow position: chr15:7894562-7894285 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 160

Conread position: 166-380
Cow position: chr15:2589774-2589565 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 91, 0

Conread position: 166-380
Cow position: chr15:2592135-2591926 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 91, 0

Conread position: 193-414
Cow position: chr15:56206-56432 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 205-458
Cow position: chr15:6650259-6650012 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 178, 64

Conread position: 219-413
Cow position: chr15:12453161-12453354 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 234-380
Cow position: chr15:32710453-32710599 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 128
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 247-426
Cow position: chr15:5068623-5068801 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 146
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 160, 0

Conread position: 267-414
Cow position: chr15:5544585-5544735 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 116, 0

Conread position: 308-502
Cow position: chr15:32679741-32679548 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 7, 0

Conread position: 342-454
Cow position: chr15:51801566-51801677 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 0

Show alignments to all cow chromosomes.