Cow genome map

Conread name: LyN1-MLN01A120092

Conread position: 1-123
Cow position: chr3:57901016-57901139 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 1-203
Cow position: chr3:4285686-4285888 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 132

Conread position: 1-205
Cow position: chr3:63005348-63005142 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 105

Conread position: 1-229
Cow position: chr3:14634311-14634084 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 18, 114

Conread position: 1-252
Cow position: chr3:37968881-37969130 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-305
Cow position: chr3:57856537-57856841 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-312
Cow position: chr3:46678112-46677800 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 17

Conread position: 1-320
Cow position: chr3:17828849-17828530 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-322
Cow position: chr3:32146290-32145971 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-343
Cow position: chr3:5047384-5047042 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-348
Cow position: chr3:23291605-23291256 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 131

Conread position: 1-349
Cow position: chr3:15989235-15988879 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 132

Conread position: 1-357
Cow position: chr3:50915106-50915462 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 34

Conread position: 1-361
Cow position: chr3:18811303-18811663 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 1-368
Cow position: chr3:5883341-5883706 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 133

Conread position: 1-369
Cow position: chr3:70083845-70083486 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 105

Conread position: 1-373
Cow position: chr3:53515419-53515785 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 1-374
Cow position: chr3:19757159-19756786 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-374
Cow position: chr3:64017563-64017192 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 17

Conread position: 1-379
Cow position: chr3:56340623-56340249 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-380
Cow position: chr3:594379-594755 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 77

Conread position: 1-380
Cow position: chr3:2917263-2917640 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-380
Cow position: chr3:5995896-5995518 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-380
Cow position: chr3:18542607-18542229 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 68

Conread position: 1-380
Cow position: chr3:21182884-21182508 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 75

Conread position: 1-380
Cow position: chr3:34031098-34030720 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 133

Conread position: 1-380
Cow position: chr3:40823189-40823566 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 1-380
Cow position: chr3:41211937-41211558 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-380
Cow position: chr3:48061030-48060653 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-380
Cow position: chr3:49614176-49613798 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-380
Cow position: chr3:66619979-66620351 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 97

Conread position: 1-380
Cow position: chr3:72629869-72630249 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-380
Cow position: chr3:78027610-78027231 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-381
Cow position: chr3:66638540-66638920 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 1-390
Cow position: chr3:3522815-3523210 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 140

Conread position: 1-391
Cow position: chr3:5829828-5829439 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-391
Cow position: chr3:57499718-57499356 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 1-393
Cow position: chr3:472334-472724 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-393
Cow position: chr3:2633729-2634112 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-393
Cow position: chr3:2653908-2654294 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 17

Conread position: 1-393
Cow position: chr3:31354456-31354073 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-393
Cow position: chr3:36117476-36117855 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 137

Conread position: 1-393
Cow position: chr3:59861166-59861558 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-393
Cow position: chr3:64028285-64027894 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 132

Conread position: 1-393
Cow position: chr3:66119457-66119847 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-393
Cow position: chr3:77474560-77474954 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 103

Conread position: 1-414
Cow position: chr3:26949315-26949725 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 45

Conread position: 1-414
Cow position: chr3:45869409-45869003 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 17

Conread position: 1-420
Cow position: chr3:57484927-57484510 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 1-425
Cow position: chr3:7168596-7169022 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 75

Conread position: 1-425
Cow position: chr3:42580165-42579745 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 93

Conread position: 1-431
Cow position: chr3:7158930-7158496 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 47

Conread position: 1-431
Cow position: chr3:22335693-22336125 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 134

Conread position: 1-431
Cow position: chr3:47081857-47081421 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 18

Conread position: 1-431
Cow position: chr3:47179403-47178968 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-431
Cow position: chr3:64650432-64650863 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 77

Conread position: 1-433
Cow position: chr3:18463785-18463362 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 132

Conread position: 1-487
Cow position: chr3:4027074-4027558 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 17

Conread position: 1-500
Cow position: chr3:48231194-48230708 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 1-502
Cow position: chr3:29594997-29595491 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 1-506
Cow position: chr3:64358365-64357865 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 62

Conread position: 1-527
Cow position: chr3:31898171-31897651 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 17

Conread position: 2-380
Cow position: chr3:42432032-42432410 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 132

Conread position: 2-380
Cow position: chr3:69933195-69933573 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 132

Conread position: 2-502
Cow position: chr3:6685262-6685746 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 17

Conread position: 3-431
Cow position: chr3:15178113-15178542 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 35

Conread position: 3-444
Cow position: chr3:54783343-54783787 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 113

Conread position: 4-393
Cow position: chr3:207357-206969 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 14

Conread position: 4-412
Cow position: chr3:56097339-56097730 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 278
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 15, 53

Conread position: 4-480
Cow position: chr3:36098901-36098440 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 5-393
Cow position: chr3:9716618-9717002 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 121

Conread position: 5-411
Cow position: chr3:58947261-58947665 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 129

Conread position: 5-431
Cow position: chr3:46861499-46861066 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 130

Conread position: 6-317
Cow position: chr3:17775904-17776201 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 113, 87

Conread position: 18-367
Cow position: chr3:19943879-19944216 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 58

Conread position: 18-380
Cow position: chr3:18859238-18859593 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 114

Conread position: 18-430
Cow position: chr3:6782206-6782620 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 108

Conread position: 19-425
Cow position: chr3:3054416-3054821 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 117

Conread position: 23-380
Cow position: chr3:56321140-56321494 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 23-431
Cow position: chr3:66891138-66890726 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 109

Conread position: 29-502
Cow position: chr3:19802489-19802948 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 30-478
Cow position: chr3:34093613-34093171 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 24

Conread position: 30-502
Cow position: chr3:52864641-52864170 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 11

Conread position: 31-238
Cow position: chr3:13274106-13273901 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 148, 84

Conread position: 32-380
Cow position: chr3:23214229-23213883 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 32-415
Cow position: chr3:32842598-32842235 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 73

Conread position: 32-425
Cow position: chr3:26822661-26822282 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 64

Conread position: 36-393
Cow position: chr3:3806180-3806519 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 48-380
Cow position: chr3:14439911-14439582 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 56-506
Cow position: chr3:39326576-39327019 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 6

Conread position: 60-411
Cow position: chr3:77423541-77423882 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 64-425
Cow position: chr3:49677651-49678010 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 84-479
Cow position: chr3:45775205-45774822 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 53

Conread position: 99-431
Cow position: chr3:68700070-68699736 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 35

Conread position: 99-431
Cow position: chr3:68873848-68873518 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 35

Conread position: 211-502
Cow position: chr3:63004723-63004445 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 166

Conread position: 213-393
Cow position: chr3:29331265-29331085 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 150
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 221-506
Cow position: chr3:14632678-14632399 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 231-381
Cow position: chr3:53713078-53713228 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 126
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 243-431
Cow position: chr3:40340070-40339875 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 139, 0

Conread position: 290-437
Cow position: chr3:63241688-63241542 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 131, 0

Conread position: 362-507
Cow position: chr3:66990924-66991067 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.