Cow genome map
| Conread name: | LyN1-MLN01A120092 |
| Conread position: | 1-195 |
| Cow position: | chr5:10844175-10843981 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-215 |
| Cow position: | chr5:46005684-46005463 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-224 |
| Cow position: | chr5:53714953-53715176 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 1-259 |
| Cow position: | chr5:18665661-18665919 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-280 |
| Cow position: | chr5:25207042-25206762 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 1-286 |
| Cow position: | chr5:4088504-4088789 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-300 |
| Cow position: | chr5:5318057-5317759 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 1-310 |
| Cow position: | chr5:58819935-58819626 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 1-351 |
| Cow position: | chr5:61273480-61273138 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-374 |
| Cow position: | chr5:48809016-48808643 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-374 |
| Cow position: | chr5:64782317-64781946 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-379 |
| Cow position: | chr5:2430433-2430055 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr5:2530970-2531349 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 1-380 |
| Cow position: | chr5:14379862-14380240 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-380 |
| Cow position: | chr5:24098348-24098727 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr5:29042211-29042589 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-380 |
| Cow position: | chr5:30579022-30579400 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 1-380 |
| Cow position: | chr5:37732045-37732424 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr5:46663698-46664081 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-380 |
| Cow position: | chr5:58195701-58196080 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 1-381 |
| Cow position: | chr5:32733547-32733173 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-388 |
| Cow position: | chr5:27909571-27909186 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 1-393 |
| Cow position: | chr5:26079519-26079127 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-393 |
| Cow position: | chr5:27652282-27651891 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 1-393 |
| Cow position: | chr5:41551225-41550835 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 9 |
| Conread position: | 1-393 |
| Cow position: | chr5:44459182-44459574 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-393 |
| Cow position: | chr5:49181975-49182360 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 1-393 |
| Cow position: | chr5:59481954-59482344 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 1-411 |
| Cow position: | chr5:32674043-32673633 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 1-414 |
| Cow position: | chr5:32945576-32945988 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 18 |
| Conread position: | 1-420 |
| Cow position: | chr5:416023-415603 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-420 |
| Cow position: | chr5:4068689-4069107 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-425 |
| Cow position: | chr5:26769510-26769927 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 1-431 |
| Cow position: | chr5:4019499-4019062 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 1-431 |
| Cow position: | chr5:6589322-6588884 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 1-431 |
| Cow position: | chr5:24576613-24577051 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 1-431 |
| Cow position: | chr5:31706274-31706710 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 1-431 |
| Cow position: | chr5:32772181-32772618 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-431 |
| Cow position: | chr5:47831405-47830977 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-431 |
| Cow position: | chr5:48468577-48468143 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-466 |
| Cow position: | chr5:41529872-41529428 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 1-480 |
| Cow position: | chr5:46630741-46630273 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 1-502 |
| Cow position: | chr5:46659431-46659913 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 1-502 |
| Cow position: | chr5:49593756-49593257 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 2-387 |
| Cow position: | chr5:28031183-28031563 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 3-455 |
| Cow position: | chr5:29009061-29009511 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 4-393 |
| Cow position: | chr5:45699986-45700357 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 4-431 |
| Cow position: | chr5:45182407-45181967 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 4-479 |
| Cow position: | chr5:25000946-25000475 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 9 |
| Conread position: | 5-414 |
| Cow position: | chr5:46738881-46738476 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 5-428 |
| Cow position: | chr5:41962534-41962113 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 6-393 |
| Cow position: | chr5:34202644-34203026 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 129 |
| Conread position: | 6-478 |
| Cow position: | chr5:52433681-52434141 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 13 |
| Conread position: | 10-380 |
| Cow position: | chr5:7273561-7273906 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 10-391 |
| Cow position: | chr5:28022869-28023242 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 13-176 |
| Cow position: | chr5:27569868-27570030 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 137, 5 |
| Conread position: | 18-380 |
| Cow position: | chr5:57482829-57482468 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 18-427 |
| Cow position: | chr5:59060338-59060750 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 114 |
| Conread position: | 23-431 |
| Cow position: | chr5:10776542-10776128 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 111 |
| Conread position: | 24-419 |
| Cow position: | chr5:31101872-31101491 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 44 |
| Conread position: | 32-380 |
| Cow position: | chr5:49518391-49518736 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 37-393 |
| Cow position: | chr5:9686692-9686336 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 66 |
| Conread position: | 51-393 |
| Cow position: | chr5:20972282-20971955 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 55-393 |
| Cow position: | chr5:46644441-46644780 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 79 |
| Conread position: | 189-387 |
| Cow position: | chr5:27570000-27570197 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 228-516 |
| Cow position: | chr5:18117648-18117372 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 234-474 |
| Cow position: | chr5:23228163-23228396 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 261-431 |
| Cow position: | chr5:18665953-18666130 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 263-393 |
| Cow position: | chr5:6611972-6612102 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-380 |
| Cow position: | chr5:18122502-18122390 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-472 |
| Cow position: | chr5:7502932-7502742 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 284-431 |
| Cow position: | chr5:35299835-35299989 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
Show alignments to all cow chromosomes.