Cow genome map
| Conread name: | LyN1-MLN01A120092 |
| Conread position: | 1-185 |
| Cow position: | chr9:8969155-8968968 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-289 |
| Cow position: | chr9:46626028-46625741 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 1-305 |
| Cow position: | chr9:29028458-29028151 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 1-329 |
| Cow position: | chr9:222778-222449 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 1-330 |
| Cow position: | chr9:1252196-1251876 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 1-374 |
| Cow position: | chr9:3567082-3566709 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 1-380 |
| Cow position: | chr9:781035-780655 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 1-380 |
| Cow position: | chr9:4532265-4532640 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-380 |
| Cow position: | chr9:6051276-6050899 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 17 |
| Conread position: | 1-380 |
| Cow position: | chr9:16175538-16175916 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr9:17064627-17064234 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr9:29628976-29628598 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr9:31807304-31807682 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 1-380 |
| Cow position: | chr9:37971436-37971061 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-380 |
| Cow position: | chr9:42309453-42309832 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-380 |
| Cow position: | chr9:50789448-50789826 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-380 |
| Cow position: | chr9:59174386-59174011 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 1-380 |
| Cow position: | chr9:60278251-60277873 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-381 |
| Cow position: | chr9:3548402-3548023 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-387 |
| Cow position: | chr9:31194396-31194009 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 1-391 |
| Cow position: | chr9:15072287-15072674 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 1-392 |
| Cow position: | chr9:3586126-3586530 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 1-392 |
| Cow position: | chr9:34992154-34992554 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 1-393 |
| Cow position: | chr9:2170826-2171219 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 1-393 |
| Cow position: | chr9:28626270-28625879 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 1-393 |
| Cow position: | chr9:30672141-30672530 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-393 |
| Cow position: | chr9:37064025-37063641 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 1-394 |
| Cow position: | chr9:1996142-1995751 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 1-425 |
| Cow position: | chr9:3155803-3156216 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 1-425 |
| Cow position: | chr9:3542581-3543002 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-425 |
| Cow position: | chr9:10315139-10315563 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 125 |
| Conread position: | 1-425 |
| Cow position: | chr9:31020581-31021018 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 18 |
| Conread position: | 1-425 |
| Cow position: | chr9:37129766-37129349 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 128 |
| Conread position: | 1-431 |
| Cow position: | chr9:25483644-25484078 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 1-431 |
| Cow position: | chr9:28677746-28678180 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 1-431 |
| Cow position: | chr9:34242827-34242392 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 243 |
| Conread position: | 1-443 |
| Cow position: | chr9:30826452-30826903 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 1-475 |
| Cow position: | chr9:64118602-64119056 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 17 |
| Conread position: | 1-674 |
| Cow position: | chr9:4672378-4673051 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 2-393 |
| Cow position: | chr9:2185733-2186128 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 3-396 |
| Cow position: | chr9:26002358-26001988 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 3-401 |
| Cow position: | chr9:3578698-3578331 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 3-431 |
| Cow position: | chr9:1076426-1075990 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 4-204 |
| Cow position: | chr9:7002326-7002526 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 5-261 |
| Cow position: | chr9:2199881-2200137 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 5-374 |
| Cow position: | chr9:9012881-9013250 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 13 |
| Conread position: | 5-425 |
| Cow position: | chr9:792739-792321 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 6-407 |
| Cow position: | chr9:35657731-35658121 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 10-431 |
| Cow position: | chr9:25755443-25755016 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 14-431 |
| Cow position: | chr9:45873131-45873554 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 16-393 |
| Cow position: | chr9:59443639-59444012 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 100 |
| Conread position: | 18-420 |
| Cow position: | chr9:59535886-59536285 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 79 |
| Conread position: | 23-431 |
| Cow position: | chr9:3006452-3006049 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 27-493 |
| Cow position: | chr9:2001605-2001176 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 70 |
| Conread position: | 36-458 |
| Cow position: | chr9:3356181-3355766 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 8 |
| Conread position: | 43-415 |
| Cow position: | chr9:18836823-18837196 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 144 |
| Conread position: | 53-500 |
| Cow position: | chr9:13477384-13476954 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 60-387 |
| Cow position: | chr9:16268202-16268528 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 120-457 |
| Cow position: | chr9:1635441-1635765 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 144-393 |
| Cow position: | chr9:64018545-64018297 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 148-408 |
| Cow position: | chr9:37095111-37095372 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 154-478 |
| Cow position: | chr9:39040497-39040815 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 186-486 |
| Cow position: | chr9:44817814-44818113 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 194-515 |
| Cow position: | chr9:20309568-20309253 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 206-393 |
| Cow position: | chr9:31064408-31064595 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-393 |
| Cow position: | chr9:8968968-8968795 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 219-415 |
| Cow position: | chr9:3937833-3937641 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 231-380 |
| Cow position: | chr9:60651712-60651563 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-471 |
| Cow position: | chr9:3803059-3803280 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 191, 168 |
| Conread position: | 345-498 |
| Cow position: | chr9:44794577-44794723 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.