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Cow genome map

           
Conread name:
           
LyN1-MLN01C050017
        

               
Conread position:
               
1-166
               

               
Cow position:
               
chr21:4568332-4568167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
138, 16
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr21:37886459-37886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr21:12461920-12462106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr21:8187456-8187666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:25286564-25286318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:28997852-28998102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 6
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr21:6834096-6833855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr21:42190124-42190362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr21:34739891-34739650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr21:35062133-35061889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
74, 46
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:9416297-9416042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:27743796-27743542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 190
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:36793941-36793682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 122
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr21:13365390-13365139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr21:21223333-21223085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:5426022-5425766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:1059127-1058858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:7156810-7156534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
128, 53
               

               
Conread position:
               
2-111
               

               
Cow position:
               
chr21:24703725-24703616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr21:2412810-2412640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
71, 107
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr21:10114287-10114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr21:49662075-49662294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr21:22353188-22353418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr21:42459490-42459741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr21:17674184-17674431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
71, 18
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr21:30150218-30150464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr21:47823227-47823466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr21:31576543-31576315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
220, 45
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr21:9278431-9278172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr21:17428545-17428306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr21:18378889-18378645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr21:23786078-23785832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
71, 214
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr21:8289584-8289842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr21:44754730-44754983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr21:8931838-8932016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr21:41583320-41583127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr21:35997221-35996981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr21:11676007-11676167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chr21:25800442-25800238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
69, 127
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr21:13048150-13048393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr21:23801083-23801326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
243, 11
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr21:28955556-28955304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
5-115
               

               
Cow position:
               
chr21:35044266-35044375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
5-192
               

               
Cow position:
               
chr21:32904111-32904288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr21:6316260-6316050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr21:13840369-13840167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr21:44347-44148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr21:15911445-15911218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 87
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr21:40786720-40786488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr21:22856262-22856029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr21:34565167-34565401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr21:47465076-47465309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr21:8985590-8985354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr21:9353489-9353244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:12960856-12961099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:13034997-13035249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:24698523-24698289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:25127646-25127408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:27124081-27124328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:41155906-41155662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
134, 12
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:44825846-44826076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr21:47802217-47802460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chr21:394062-393819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
132, 14
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chr21:33729472-33729231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr21:27229749-27229998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr21:45866976-45866724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr21:10118601-10118335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr21:28944321-28944584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr21:33791324-33791556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr21:32559317-32559547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 58
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr21:16166599-16166828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
133, 61
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr21:3818256-3818016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 130
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr21:39403492-39403738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr21:31676541-31676297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr21:23149978-23150221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
6-251
               

               
Cow position:
               
chr21:724842-725095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
6-266
               

               
Cow position:
               
chr21:21077372-21077111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 155
               

               
Conread position:
               
6-266
               

               
Cow position:
               
chr21:34835391-34835641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-147
               

               
Cow position:
               
chr21:31200217-31200076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr21:5898354-5898590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr21:40134204-40133955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
8-168
               

               
Cow position:
               
chr21:2294029-2293869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
92, 157
               

               
Conread position:
               
8-239
               

               
Cow position:
               
chr21:28443334-28443570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr21:28993579-28993820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr21:12973205-12973450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr21:20925466-20925703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr21:18844975-18845214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr21:45330560-45330807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr21:3236562-3236332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr21:13898227-13897991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
98, 124
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr21:1464273-1464028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 93
               

               
Conread position:
               
9-113
               

               
Cow position:
               
chr21:23397807-23397908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
63, 86
               

               
Conread position:
               
9-137
               

               
Cow position:
               
chr21:41514846-41514717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
9-147
               

               
Cow position:
               
chr21:20418643-20418784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
9-220
               

               
Cow position:
               
chr21:47861239-47861022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
9-230
               

               
Cow position:
               
chr21:37345056-37345284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr21:28626281-28626053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
130, 122
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr21:10151839-10151601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr21:11114751-11114517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr21:5597191-5596951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr21:42170677-42170435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 213
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr21:395911-395679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr21:19615217-19614976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr21:44093823-44093580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 99
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:33762-33521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
87, 121
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:3381042-3381281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 127
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:5454948-5455182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:16612664-16612429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:33997188-33997422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:42384551-42384305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr21:42913704-42913946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 72
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr21:12617178-12616937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr21:28882176-28881940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
116, 96
               

               
Conread position:
               
9-251
               

               
Cow position:
               
chr21:41878514-41878273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 137
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr21:34390932-34391175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr21:12801710-12801962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr21:14464623-14464359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
10-141
               

               
Cow position:
               
chr21:21140563-21140436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
10-169
               

               
Cow position:
               
chr21:18782306-18782144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr21:1591593-1591363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
7, 211
               

               
Conread position:
               
10-239
               

               
Cow position:
               
chr21:33727425-33727652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr21:23449615-23449376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 118
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr21:40244479-40244237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr21:4098910-4098675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr21:7564277-7564522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr21:33982766-33983010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
129, 85
               

               
Conread position:
               
10-250
               

               
Cow position:
               
chr21:2679598-2679350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
10-263
               

               
Cow position:
               
chr21:5137445-5137705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
11-168
               

               
Cow position:
               
chr21:41595753-41595590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chr21:24642559-24642359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 150
               

               
Conread position:
               
11-230
               

               
Cow position:
               
chr21:37361435-37361652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr21:38449407-38449648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr21:20426566-20426337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr21:33210240-33210001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr21:41974336-41974576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr21:46849088-46849320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr21:82119-81870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr21:19196122-19196368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr21:41957137-41957374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 147
               

               
Conread position:
               
11-251
               

               
Cow position:
               
chr21:12154172-12153930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
11-251
               

               
Cow position:
               
chr21:44515302-44515071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 78
               

               
Conread position:
               
11-266
               

               
Cow position:
               
chr21:29002117-29002380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
12-214
               

               
Cow position:
               
chr21:28211237-28211030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
12-230
               

               
Cow position:
               
chr21:17175189-17174958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr21:29943041-29942818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr21:42135582-42135819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
12-245
               

               
Cow position:
               
chr21:23499791-23500018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
12-245
               

               
Cow position:
               
chr21:24222500-24222735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
140, 168
               

               
Conread position:
               
12-248
               

               
Cow position:
               
chr21:10727315-10727081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
12-248
               

               
Cow position:
               
chr21:13409787-13410023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr21:6102219-6102477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
13-235
               

               
Cow position:
               
chr21:39075671-39075896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
13-236
               

               
Cow position:
               
chr21:14452270-14452042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 19
               

               
Conread position:
               
13-248
               

               
Cow position:
               
chr21:23192477-23192718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
13-248
               

               
Cow position:
               
chr21:47215144-47215381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 161
               

               
Conread position:
               
14-243
               

               
Cow position:
               
chr21:23322042-23322276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
69, 208
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr21:43240902-43240661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
15-229
               

               
Cow position:
               
chr21:12087625-12087413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
16-242
               

               
Cow position:
               
chr21:31253578-31253341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
17-166
               

               
Cow position:
               
chr21:21181210-21181058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
17-190
               

               
Cow position:
               
chr21:11521014-11521192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
17-191
               

               
Cow position:
               
chr21:6058608-6058783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
117, 54
               

               
Conread position:
               
17-242
               

               
Cow position:
               
chr21:46973100-46973321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr21:43357227-43357454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
17-245
               

               
Cow position:
               
chr21:911934-912164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
17-248
               

               
Cow position:
               
chr21:30897447-30897219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
17-248
               

               
Cow position:
               
chr21:48250994-48251230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 78
               

               
Conread position:
               
17-249
               

               
Cow position:
               
chr21:28477658-28477420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
17-250
               

               
Cow position:
               
chr21:36795634-36795400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
14, 121
               

               
Conread position:
               
17-251
               

               
Cow position:
               
chr21:42905343-42905581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
17-266
               

               
Cow position:
               
chr21:24759092-24758851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
18-226
               

               
Cow position:
               
chr21:8235522-8235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
18-245
               

               
Cow position:
               
chr21:23586912-23586679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
18-247
               

               
Cow position:
               
chr21:11644938-11645168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr21:48484415-48484641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
18-255
               

               
Cow position:
               
chr21:42053233-42053472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 113
               

               
Conread position:
               
18-261
               

               
Cow position:
               
chr21:24865190-24864945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
19-214
               

               
Cow position:
               
chr21:28244500-28244310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
19-232
               

               
Cow position:
               
chr21:17183954-17183737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
19-236
               

               
Cow position:
               
chr21:18495000-18494778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
120, 200
               

               
Conread position:
               
19-236
               

               
Cow position:
               
chr21:36819181-36819401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 172
               

               
Conread position:
               
19-236
               

               
Cow position:
               
chr21:40589454-40589671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
19-245
               

               
Cow position:
               
chr21:22861030-22860805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
19-248
               

               
Cow position:
               
chr21:39401625-39401400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 194
               

               
Conread position:
               
19-265
               

               
Cow position:
               
chr21:2927171-2927420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
21-248
               

               
Cow position:
               
chr21:28512556-28512332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
116, 9
               

               
Conread position:
               
21-248
               

               
Cow position:
               
chr21:29485008-29484784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
21-265
               

               
Cow position:
               
chr21:33947223-33947461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
23-251
               

               
Cow position:
               
chr21:23478690-23478922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 183
               

               
Conread position:
               
24-248
               

               
Cow position:
               
chr21:4998460-4998685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
98, 190
               

               
Conread position:
               
25-245
               

               
Cow position:
               
chr21:46912565-46912347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 117
               

               
Conread position:
               
25-248
               

               
Cow position:
               
chr21:24094723-24094944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
25-266
               

               
Cow position:
               
chr21:21000013-21000244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
138, 57
               

               
Conread position:
               
29-245
               

               
Cow position:
               
chr21:17410636-17410856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
29-248
               

               
Cow position:
               
chr21:8618298-8618074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
29-248
               

               
Cow position:
               
chr21:32237316-32237097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
29-265
               

               
Cow position:
               
chr21:24765311-24765067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
31-179
               

               
Cow position:
               
chr21:40312781-40312933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
39-248
               

               
Cow position:
               
chr21:24714668-24714453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 180
               

               
Conread position:
               
42-250
               

               
Cow position:
               
chr21:46829262-46829468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
174, 191
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chr21:21919847-21919660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
44-253
               

               
Cow position:
               
chr21:23683554-23683345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
127, 115
               

               
Conread position:
               
55-248
               

               
Cow position:
               
chr21:37479954-37479756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
56-224
               

               
Cow position:
               
chr21:30592310-30592479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
57-255
               

               
Cow position:
               
chr21:28442739-28442537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
63-195
               

               
Cow position:
               
chr21:32191453-32191313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
63-225
               

               
Cow position:
               
chr21:35897645-35897803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
74, 0
               
Show alignments to all cow chromosomes.