Cow genome map
| Conread name: | LyN1-MLN01C080049 |
| Conread position: | 2-416 |
| Cow position: | chr17:22452091-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 259 |
| Conread position: | 20-327 |
| Cow position: | chr17:22551789-22551481 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 22-831 |
| Cow position: | chr17:22552626-22551817 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 92 |
| Conread position: | 23-678 |
| Cow position: | chr17:22499252-22498597 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 237 |
| Conread position: | 24-305 |
| Cow position: | chr17:22589454-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-402 |
| Cow position: | chr17:22551868-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-653 |
| Cow position: | chr17:22499167-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 128 |
| Conread position: | 24-831 |
| Cow position: | chr17:22552456-22551649 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-834 |
| Cow position: | chr17:22552960-22552150 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 747, 739 |
| Conread position: | 24-836 |
| Cow position: | chr17:22552540-22551728 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 25-676 |
| Cow position: | chr17:22552203-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 30-436 |
| Cow position: | chr17:22589616-22589210 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 30-570 |
| Cow position: | chr17:22552030-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 30-752 |
| Cow position: | chr17:22452399-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 698, 708 |
| Conread position: | 30-816 |
| Cow position: | chr17:22499329-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 288 |
| Conread position: | 30-816 |
| Cow position: | chr17:22552702-22551916 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 30-831 |
| Cow position: | chr17:22590204-22589403 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 30-834 |
| Cow position: | chr17:22552366-22551562 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 30-834 |
| Cow position: | chr17:22552870-22552066 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 30-834 |
| Cow position: | chr17:22553122-22552318 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 755, 749 |
| Conread position: | 30-834 |
| Cow position: | chr17:22590120-22589316 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 248 |
| Conread position: | 32-801 |
| Cow position: | chr17:22589950-22589181 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 33-339 |
| Cow position: | chr17:22473655-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 33-413 |
| Cow position: | chr17:22473571-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 34-497 |
| Cow position: | chr17:22473488-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 433, 0 |
| Conread position: | 40-812 |
| Cow position: | chr17:41440963-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 45-591 |
| Cow position: | chr17:22473415-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 219 |
| Conread position: | 45-816 |
| Cow position: | chr17:22499398-22498627 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 406 |
| Conread position: | 47-479 |
| Cow position: | chr17:41440621-41440188 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 6, 72 |
| Conread position: | 47-483 |
| Cow position: | chr17:44467942-44468379 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 138 |
| Conread position: | 47-508 |
| Cow position: | chr17:44467859-44468320 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 212, 219 |
| Conread position: | 47-835 |
| Cow position: | chr17:44467522-44468311 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 54 |
| Conread position: | 47-836 |
| Cow position: | chr17:41441040-41440251 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 334 |
| Conread position: | 51-645 |
| Cow position: | chr17:22473337-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 51-831 |
| Cow position: | chr17:22552765-22551985 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 716, 710 |
| Conread position: | 53-836 |
| Cow position: | chr17:41441118-41440335 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 247 |
| Conread position: | 56-824 |
| Cow position: | chr17:44467364-44468132 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 61-716 |
| Cow position: | chr17:22473263-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 247 |
| Conread position: | 61-816 |
| Cow position: | chr17:22590257-22589502 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 123 |
| Conread position: | 69-835 |
| Cow position: | chr17:44467461-44468227 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 115 |
| Conread position: | 80-813 |
| Cow position: | chr17:22473201-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 63 |
| Conread position: | 102-761 |
| Cow position: | chr17:22452411-22451752 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 590, 577 |
| Conread position: | 111-813 |
| Cow position: | chr17:44467671-44468373 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 409 |
| Conread position: | 112-834 |
| Cow position: | chr17:22590290-22589568 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 114-834 |
| Cow position: | chr17:22553122-22552402 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 194 |
| Conread position: | 129-836 |
| Cow position: | chr17:22499398-22498691 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 320 |
| Conread position: | 132-836 |
| Cow position: | chr17:44467355-44468060 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 137-836 |
| Cow position: | chr17:41441118-41440419 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 249 |
| Conread position: | 186-834 |
| Cow position: | chr17:22452411-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 145 |
| Conread position: | 189-834 |
| Cow position: | chr17:22590297-22589652 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 242-831 |
| Cow position: | chr17:22553162-22552573 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-836 |
| Cow position: | chr17:22590304-22589734 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-831 |
| Cow position: | chr17:22473267-22473781 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 434-834 |
| Cow position: | chr17:22553138-22552738 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 125, 130 |
Show alignments to all cow chromosomes.