Cow genome map

Conread name: LyN1-MLN01C080049

Conread position: 1-834
Cow position: chr22:12419344-12418494 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 702

Conread position: 12-558
Cow position: chr22:12458309-12457763 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 9

Conread position: 13-227
Cow position: chr22:12499758-12499972 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 14-260
Cow position: chr22:46654566-46654812 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 14-834
Cow position: chr22:12432195-12431375 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 340

Conread position: 16-834
Cow position: chr22:12458641-12457823 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 592, 582

Conread position: 19-812
Cow position: chr22:12499177-12499969 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 5

Conread position: 19-834
Cow position: chr22:12498839-12499655 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 243

Conread position: 20-834
Cow position: chr22:12432442-12431627 (view UCSC Genome Browser custom track)
Alignm length: 817
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 280

Conread position: 22-303
Cow position: chr22:12430843-12430562 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 79

Conread position: 24-555
Cow position: chr22:12399281-12398750 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-682
Cow position: chr22:12431261-12430603 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 497

Conread position: 24-834
Cow position: chr22:12476162-12475352 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 743, 739

Conread position: 24-836
Cow position: chr22:12499097-12499909 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 505, 509

Conread position: 27-311
Cow position: chr22:46654495-46654779 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 27-639
Cow position: chr22:12385522-12384908 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 71

Conread position: 27-717
Cow position: chr22:12399446-12398756 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 72

Conread position: 27-816
Cow position: chr22:12399614-12398825 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 157

Conread position: 30-475
Cow position: chr22:11701250-11701695 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 281
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 63, 73

Conread position: 30-478
Cow position: chr22:11641007-11641455 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 267

Conread position: 30-479
Cow position: chr22:12475736-12475287 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-479
Cow position: chr22:12499523-12499972 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-639
Cow position: chr22:12399359-12398750 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-644
Cow position: chr22:12475904-12475290 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 566, 578

Conread position: 30-663
Cow position: chr22:12544646-12545279 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 367
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 236, 230

Conread position: 30-685
Cow position: chr22:12458459-12457802 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 74

Conread position: 30-714
Cow position: chr22:12385603-12384917 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 70

Conread position: 30-723
Cow position: chr22:12475988-12475295 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 72

Conread position: 30-760
Cow position: chr22:14467956-14468685 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 75

Conread position: 30-791
Cow position: chr22:12399527-12398766 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 153

Conread position: 30-799
Cow position: chr22:12431339-12430570 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 72

Conread position: 30-808
Cow position: chr22:14441941-14442716 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 469
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 229, 241

Conread position: 30-810
Cow position: chr22:46654078-46654859 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 147

Conread position: 30-813
Cow position: chr22:11640671-11641454 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 30-825
Cow position: chr22:12419231-12418420 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 807

Conread position: 30-831
Cow position: chr22:12399695-12398894 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 228

Conread position: 30-834
Cow position: chr22:12399779-12398975 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 44

Conread position: 30-834
Cow position: chr22:12431675-12430871 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 155

Conread position: 30-834
Cow position: chr22:12432263-12431459 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 74

Conread position: 30-834
Cow position: chr22:12476324-12475520 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 320

Conread position: 32-812
Cow position: chr22:12476070-12475290 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 153

Conread position: 33-831
Cow position: chr22:12431504-12430706 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 321

Conread position: 34-825
Cow position: chr22:14430135-14430926 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 149

Conread position: 37-810
Cow position: chr22:12458536-12457763 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 346

Conread position: 37-831
Cow position: chr22:12476233-12475439 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 259

Conread position: 37-831
Cow position: chr22:12499026-12499820 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 260

Conread position: 37-836
Cow position: chr22:12432340-12431541 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 271

Conread position: 45-816
Cow position: chr22:46654009-46654780 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 45-834
Cow position: chr22:14429642-14430431 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 273

Conread position: 45-834
Cow position: chr22:14430062-14430851 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 136

Conread position: 47-834
Cow position: chr22:12476391-12475604 (view UCSC Genome Browser custom track)
Alignm length: 790
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 214

Conread position: 51-799
Cow position: chr22:12385666-12384916 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 133

Conread position: 51-810
Cow position: chr22:12431738-12430979 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 303

Conread position: 51-834
Cow position: chr22:12431822-12431039 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 49

Conread position: 51-834
Cow position: chr22:12431906-12431123 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 133

Conread position: 51-834
Cow position: chr22:12432494-12431711 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 224

Conread position: 53-834
Cow position: chr22:12399918-12399143 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 79

Conread position: 54-834
Cow position: chr22:12432071-12431291 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-834
Cow position: chr22:12399830-12399059 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 245

Conread position: 65-834
Cow position: chr22:11640622-11641391 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 697, 710

Conread position: 73-834
Cow position: chr22:14429505-14430263 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 112

Conread position: 74-643
Cow position: chr22:11701126-11701695 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 277

Conread position: 93-810
Cow position: chr22:14467934-14468652 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 105

Conread position: 103-834
Cow position: chr22:14441929-14442658 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 427
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 11, 329

Conread position: 112-509
Cow position: chr22:11666510-11666907 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 254
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 249, 239

Conread position: 113-516
Cow position: chr22:12544897-12545300 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 251
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 71

Conread position: 113-834
Cow position: chr22:12476409-12475688 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 195

Conread position: 113-834
Cow position: chr22:12498850-12499571 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 37

Conread position: 114-834
Cow position: chr22:12458627-12457907 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 122-798
Cow position: chr22:46654002-46654678 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 55

Conread position: 134-836
Cow position: chr22:12399922-12399225 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 82

Conread position: 142-645
Cow position: chr22:11666456-11666959 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 317
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 137, 125

Conread position: 142-677
Cow position: chr22:11701110-11701645 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 130

Conread position: 149-834
Cow position: chr22:11640622-11641307 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 66

Conread position: 155-831
Cow position: chr22:12544603-12545279 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 406
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 39, 43

Conread position: 197-811
Cow position: chr22:12544477-12545091 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 357
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 79

Conread position: 197-831
Cow position: chr22:12385688-12385052 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 154

Conread position: 200-831
Cow position: chr22:11640589-11641220 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 480, 487

Conread position: 206-814
Cow position: chr22:46654002-46654610 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 55

Conread position: 221-836
Cow position: chr22:46653933-46654548 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 375
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 92, 106

Conread position: 240-834
Cow position: chr22:14429504-14430095 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 366
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 78

Conread position: 242-765
Cow position: chr22:11701126-11701649 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 114

Conread position: 300-834
Cow position: chr22:12385670-12385133 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 220

Conread position: 305-813
Cow position: chr22:11666451-11666959 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 309
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 305-834
Cow position: chr22:11701105-11701634 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 300

Conread position: 322-836
Cow position: chr22:12498891-12499405 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 191

Conread position: 326-834
Cow position: chr22:14468000-14468508 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 316
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 211, 185

Conread position: 364-836
Cow position: chr22:11640669-11641141 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 24

Conread position: 388-831
Cow position: chr22:11666450-11666893 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 289
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 140, 130

Conread position: 388-834
Cow position: chr22:11701104-11701550 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 140

Conread position: 389-836
Cow position: chr22:12419023-12418576 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 394-760
Cow position: chr22:12544419-12544788 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 231
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 39, 135

Conread position: 395-834
Cow position: chr22:11640616-11641055 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 396-834
Cow position: chr22:12476462-12476024 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 471-834
Cow position: chr22:14467977-14468340 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 234
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 62

Conread position: 485-834
Cow position: chr22:11666463-11666812 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 221
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 126, 118

Conread position: 556-836
Cow position: chr22:11666450-11666730 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 180
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 123, 127

Conread position: 556-836
Cow position: chr22:11701104-11701384 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 187
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 123, 134

Show alignments to all cow chromosomes.