Cow genome map
| Conread name: | LyN1-MLN01C080049 |
| Conread position: | 19-379 |
| Cow position: | chr28:33210280-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 22-432 |
| Cow position: | chr28:34673495-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 131, 148 |
| Conread position: | 24-455 |
| Cow position: | chr28:9299279-9299707 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 24-574 |
| Cow position: | chr28:7810406-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 131 |
| Conread position: | 24-818 |
| Cow position: | chr28:9298209-9298996 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 32 |
| Conread position: | 25-685 |
| Cow position: | chr28:7757727-7758387 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 271 |
| Conread position: | 25-798 |
| Cow position: | chr28:7757559-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 26-654 |
| Cow position: | chr28:7810324-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 27-391 |
| Cow position: | chr28:9253248-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-809 |
| Cow position: | chr28:9298795-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 27-816 |
| Cow position: | chr28:7757897-7758670 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 86 |
| Conread position: | 27-816 |
| Cow position: | chr28:9289817-9290596 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 30-425 |
| Cow position: | chr28:7758472-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 284, 278 |
| Conread position: | 30-509 |
| Cow position: | chr28:7758388-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 82 |
| Conread position: | 30-543 |
| Cow position: | chr28:34673419-34673932 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 321 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 30-558 |
| Cow position: | chr28:9253083-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 341 |
| Conread position: | 30-610 |
| Cow position: | chr28:9290152-9290728 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 30-716 |
| Cow position: | chr28:11334073-11333393 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 30-717 |
| Cow position: | chr28:34695892-34696579 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 30-834 |
| Cow position: | chr28:7757480-7758284 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 669, 665 |
| Conread position: | 31-834 |
| Cow position: | chr28:7757397-7758200 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 32-716 |
| Cow position: | chr28:7757650-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 32-825 |
| Cow position: | chr28:11333987-11333194 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 324 |
| Conread position: | 33-798 |
| Cow position: | chr28:34695811-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 169 |
| Conread position: | 33-814 |
| Cow position: | chr28:11334154-11333379 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 338 |
| Conread position: | 34-634 |
| Cow position: | chr28:9253002-9253603 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 37-660 |
| Cow position: | chr28:7758159-7758766 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 353 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 40-387 |
| Cow position: | chr28:34696238-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 46-517 |
| Cow position: | chr28:9299217-9299686 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 268, 262 |
| Conread position: | 47-834 |
| Cow position: | chr28:9252766-9253551 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 129 |
| Conread position: | 53-478 |
| Cow position: | chr28:33210231-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 195, 208 |
| Conread position: | 65-654 |
| Cow position: | chr28:9298582-9299167 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 74-593 |
| Cow position: | chr28:34673379-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 301, 294 |
| Conread position: | 75-790 |
| Cow position: | chr28:11334196-11333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 264 |
| Conread position: | 103-592 |
| Cow position: | chr28:34679589-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 113-681 |
| Cow position: | chr28:9290067-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 113-741 |
| Cow position: | chr28:7810327-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 113-810 |
| Cow position: | chr28:9252913-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 260 |
| Conread position: | 121-834 |
| Cow position: | chr28:34695815-34696528 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 229 |
| Conread position: | 134-525 |
| Cow position: | chr28:33210228-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 195, 204 |
| Conread position: | 136-834 |
| Cow position: | chr28:7757334-7758032 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 141-706 |
| Cow position: | chr28:34673362-34673927 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 319, 311 |
| Conread position: | 153-816 |
| Cow position: | chr28:7810283-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 155 |
| Conread position: | 188-823 |
| Cow position: | chr28:11334167-11333532 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 120 |
| Conread position: | 189-834 |
| Cow position: | chr28:7810244-7810871 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 390 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 577, 43 |
| Conread position: | 197-642 |
| Cow position: | chr28:7758387-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 265, 260 |
| Conread position: | 198-834 |
| Cow position: | chr28:34695724-34696360 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 216-762 |
| Cow position: | chr28:34673353-34673899 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 299, 315 |
| Conread position: | 221-645 |
| Cow position: | chr28:33210231-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 0 |
| Conread position: | 304-715 |
| Cow position: | chr28:33210229-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 306-831 |
| Cow position: | chr28:11334217-11333692 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 254, 278 |
| Conread position: | 470-836 |
| Cow position: | chr28:33210228-33210595 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 471-834 |
| Cow position: | chr28:34673356-34673719 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 294, 304 |
| Conread position: | 485-836 |
| Cow position: | chr28:34695843-34696194 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 146, 137 |
Show alignments to all cow chromosomes.