Cow genome map
| Conread name: | LyN1-MLN01C120028 |
| Conread position: | 149-647 |
| Cow position: | chr1:5191944-5192430 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 62 |
| Conread position: | 151-347 |
| Cow position: | chr1:45181232-45181420 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 151-483 |
| Cow position: | chr1:98296799-98297127 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 152-674 |
| Cow position: | chr1:92612799-92612269 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 153-349 |
| Cow position: | chr1:99050751-99050555 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 157-458 |
| Cow position: | chr1:39060654-39060362 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 55 |
| Conread position: | 158-393 |
| Cow position: | chr1:58148848-58149076 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 220, 57 |
| Conread position: | 158-445 |
| Cow position: | chr1:29838453-29838168 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 51, 191 |
| Conread position: | 158-566 |
| Cow position: | chr1:26406434-26406831 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 50 |
| Conread position: | 161-351 |
| Cow position: | chr1:15245710-15245524 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 162-464 |
| Cow position: | chr1:23935841-23936140 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 165-445 |
| Cow position: | chr1:33419736-33420009 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 47 |
| Conread position: | 166-348 |
| Cow position: | chr1:87736867-87737044 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 178-348 |
| Cow position: | chr1:13697065-13696898 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 30 |
| Conread position: | 178-348 |
| Cow position: | chr1:66600059-66599894 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 107, 30 |
| Conread position: | 179-393 |
| Cow position: | chr1:97176031-97175822 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 190-343 |
| Cow position: | chr1:57681938-57681789 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 257-610 |
| Cow position: | chr1:52388564-52388917 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 104, 12 |
| Conread position: | 272-646 |
| Cow position: | chr1:42182690-42182315 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 334-636 |
| Cow position: | chr1:98246430-98246124 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 339-646 |
| Cow position: | chr1:79626674-79626969 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 340-566 |
| Cow position: | chr1:52394006-52394223 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 111, 76 |
| Conread position: | 340-566 |
| Cow position: | chr1:79743524-79743294 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 341-520 |
| Cow position: | chr1:82516169-82515986 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 178 |
| Conread position: | 341-647 |
| Cow position: | chr1:87946515-87946831 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 347-643 |
| Cow position: | chr1:49739277-49738988 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 350-640 |
| Cow position: | chr1:100753790-100754089 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 145 |
| Conread position: | 351-566 |
| Cow position: | chr1:17488124-17488344 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 351-621 |
| Cow position: | chr1:97510030-97509763 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 352-646 |
| Cow position: | chr1:95425678-95425962 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 171, 61 |
| Conread position: | 352-648 |
| Cow position: | chr1:32350538-32350833 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 149 |
| Conread position: | 353-603 |
| Cow position: | chr1:12040684-12040443 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 104 |
| Conread position: | 355-646 |
| Cow position: | chr1:102505809-102505519 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 142 |
| Conread position: | 356-566 |
| Cow position: | chr1:102460094-102459884 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 64 |
| Conread position: | 361-549 |
| Cow position: | chr1:6714402-6714589 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 82 |
| Conread position: | 376-520 |
| Cow position: | chr1:39506654-39506802 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 118 |
| Conread position: | 382-570 |
| Cow position: | chr1:68530804-68530609 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 113 |
| Conread position: | 390-647 |
| Cow position: | chr1:102532047-102531778 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 469-645 |
| Cow position: | chr1:4044822-4044641 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 108 |
Show alignments to all cow chromosomes.