Cow genome map
| Conread name: | LyN1-MLN01D050086 |
| Conread position: | 20-458 |
| Cow position: | chr3:81527028-81527461 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 21-425 |
| Cow position: | chr3:51415216-51414820 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 22-199 |
| Cow position: | chr3:56334529-56334351 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 23-391 |
| Cow position: | chr3:43621083-43620720 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 23-410 |
| Cow position: | chr3:26802998-26803390 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 26-173 |
| Cow position: | chr3:56311051-56311198 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 133 |
| Conread position: | 26-199 |
| Cow position: | chr3:14767858-14767684 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 27-137 |
| Cow position: | chr3:19957783-19957895 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 27-222 |
| Cow position: | chr3:47749121-47749317 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 27-262 |
| Cow position: | chr3:36748452-36748218 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 27-276 |
| Cow position: | chr3:75117556-75117798 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 27-379 |
| Cow position: | chr3:69809962-69810296 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 98 |
| Conread position: | 27-390 |
| Cow position: | chr3:73427671-73427320 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 27-409 |
| Cow position: | chr3:54564011-54563646 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 27-416 |
| Cow position: | chr3:74407089-74406699 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 27-444 |
| Cow position: | chr3:83998753-83998345 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 27-458 |
| Cow position: | chr3:553024-552597 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 138 |
| Conread position: | 27-459 |
| Cow position: | chr3:548640-548224 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 27-461 |
| Cow position: | chr3:81991433-81991848 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 27-517 |
| Cow position: | chr3:48516917-48517410 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 29-269 |
| Cow position: | chr3:6887070-6887309 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 16, 141 |
| Conread position: | 29-444 |
| Cow position: | chr3:32197860-32198268 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 15 |
| Conread position: | 29-525 |
| Cow position: | chr3:19227809-19227313 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 30-409 |
| Cow position: | chr3:62740450-62740080 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 34-407 |
| Cow position: | chr3:28717241-28716868 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 35-263 |
| Cow position: | chr3:29496990-29497214 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 35-280 |
| Cow position: | chr3:60536066-60535810 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 35-281 |
| Cow position: | chr3:9188448-9188204 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 10, 128 |
| Conread position: | 35-286 |
| Cow position: | chr3:6534665-6534416 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 129 |
| Conread position: | 35-395 |
| Cow position: | chr3:29309068-29309413 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 35-529 |
| Cow position: | chr3:13508800-13508301 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 43-262 |
| Cow position: | chr3:28629595-28629826 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 53-444 |
| Cow position: | chr3:79197504-79197910 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 64-457 |
| Cow position: | chr3:84871770-84872148 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 73-463 |
| Cow position: | chr3:59298680-59298313 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 90 |
| Conread position: | 104-517 |
| Cow position: | chr3:34233135-34233532 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 113-444 |
| Cow position: | chr3:11134702-11135018 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 113-458 |
| Cow position: | chr3:2810568-2810905 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 113-484 |
| Cow position: | chr3:54074131-54074502 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 113-504 |
| Cow position: | chr3:30961302-30960904 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 132-441 |
| Cow position: | chr3:3253238-3253555 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 133-517 |
| Cow position: | chr3:19958036-19958414 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 6 |
| Conread position: | 201-389 |
| Cow position: | chr3:27887917-27888106 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 153, 24 |
| Conread position: | 210-429 |
| Cow position: | chr3:52853606-52853828 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 166, 10 |
| Conread position: | 267-517 |
| Cow position: | chr3:24920170-24919923 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 301-433 |
| Cow position: | chr3:75117790-75117925 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 306-463 |
| Cow position: | chr3:29308716-29308876 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 309-511 |
| Cow position: | chr3:39204538-39204738 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 380-520 |
| Cow position: | chr3:27888320-27888460 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 98 |
| Conread position: | 388-517 |
| Cow position: | chr3:73427125-73426995 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 389-521 |
| Cow position: | chr3:26804165-26804298 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 29 |
Show alignments to all cow chromosomes.