Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 13-383 |
| Cow position: | chr1:69767999-69768383 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 313 |
| Conread position: | 14-383 |
| Cow position: | chr1:55778010-55778390 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 24-383 |
| Cow position: | chr1:17035163-17034791 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 30-378 |
| Cow position: | chr1:69416845-69416496 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 71, 158 |
| Conread position: | 30-378 |
| Cow position: | chr1:76620039-76619680 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 30-383 |
| Cow position: | chr1:12060770-12060403 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:17011299-17010934 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:20830331-20830698 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 341 |
| Conread position: | 30-383 |
| Cow position: | chr1:29363731-29364099 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:40056540-40056908 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:50210406-50210038 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:63604335-63603967 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:65387752-65388116 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 30-383 |
| Cow position: | chr1:68606112-68605738 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:69404440-69404804 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 30-383 |
| Cow position: | chr1:81288571-81288939 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 205 |
| Conread position: | 30-383 |
| Cow position: | chr1:82477412-82477780 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:82565549-82565917 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr1:93855950-93856316 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 30-390 |
| Cow position: | chr1:26584536-26584910 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 231 |
| Conread position: | 30-391 |
| Cow position: | chr1:10724017-10724393 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-391 |
| Cow position: | chr1:30533584-30533207 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 30-391 |
| Cow position: | chr1:42737869-42738241 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 66 |
| Conread position: | 30-391 |
| Cow position: | chr1:57364907-57364528 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 30-391 |
| Cow position: | chr1:76750537-76750157 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-391 |
| Cow position: | chr1:85793117-85793496 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-391 |
| Cow position: | chr1:91891683-91891306 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 260 |
| Conread position: | 30-393 |
| Cow position: | chr1:83975727-83976096 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 30-399 |
| Cow position: | chr1:64481185-64480818 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 30-400 |
| Cow position: | chr1:80357738-80357346 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 34-383 |
| Cow position: | chr1:59207639-59207275 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 34-383 |
| Cow position: | chr1:72984914-72985253 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 34-383 |
| Cow position: | chr1:79455513-79455151 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 54, 320 |
| Conread position: | 34-383 |
| Cow position: | chr1:86546697-86546333 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 34-391 |
| Cow position: | chr1:49972729-49972358 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 34-454 |
| Cow position: | chr1:30223122-30223548 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 35-330 |
| Cow position: | chr1:40231746-40231444 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 35-392 |
| Cow position: | chr1:55320631-55320277 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 185 |
| Conread position: | 36-392 |
| Cow position: | chr1:34507867-34508222 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 36-461 |
| Cow position: | chr1:73197588-73197168 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 40-316 |
| Cow position: | chr1:89733061-89732784 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 136, 52 |
| Conread position: | 40-383 |
| Cow position: | chr1:13581543-13581192 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 40-388 |
| Cow position: | chr1:51084473-51084109 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 221 |
| Conread position: | 40-391 |
| Cow position: | chr1:85779004-85778636 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 40-486 |
| Cow position: | chr1:46837073-46837529 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 409 |
| Conread position: | 42-383 |
| Cow position: | chr1:94661122-94661473 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 42-393 |
| Cow position: | chr1:53563459-53563808 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 85, 48 |
| Conread position: | 49-383 |
| Cow position: | chr1:57135874-57136210 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 54-333 |
| Cow position: | chr1:23262796-23262514 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 54-381 |
| Cow position: | chr1:99315682-99316009 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 54-383 |
| Cow position: | chr1:48248372-48248707 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 170 |
| Conread position: | 54-383 |
| Cow position: | chr1:50941825-50941492 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 54-383 |
| Cow position: | chr1:82922698-82922360 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 54-391 |
| Cow position: | chr1:72082224-72082571 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 54-392 |
| Cow position: | chr1:91597251-91596899 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 54-397 |
| Cow position: | chr1:71740681-71740325 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 54-420 |
| Cow position: | chr1:71443065-71443408 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 212, 44 |
| Conread position: | 55-379 |
| Cow position: | chr1:99219071-99218744 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 55-391 |
| Cow position: | chr1:91900482-91900837 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 63-333 |
| Cow position: | chr1:87849157-87849425 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 63-383 |
| Cow position: | chr1:22725026-22724709 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 195, 45 |
| Conread position: | 70-390 |
| Cow position: | chr1:18964893-18964554 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 88-433 |
| Cow position: | chr1:53518579-53518927 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 148-393 |
| Cow position: | chr1:42259549-42259299 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 11, 160 |
| Conread position: | 166-383 |
| Cow position: | chr1:62921145-62921363 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 171-393 |
| Cow position: | chr1:20789017-20789240 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 145 |
| Conread position: | 171-393 |
| Cow position: | chr1:85824078-85824303 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 154 |
| Conread position: | 171-399 |
| Cow position: | chr1:29607473-29607245 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 215 |
| Conread position: | 171-426 |
| Cow position: | chr1:95164951-95164696 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 95, 196 |
| Conread position: | 172-389 |
| Cow position: | chr1:44256247-44256459 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 172-396 |
| Cow position: | chr1:58115718-58115496 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 108 |
| Conread position: | 173-392 |
| Cow position: | chr1:6769099-6769319 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 173 |
| Conread position: | 176-383 |
| Cow position: | chr1:82911233-82911025 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 181-393 |
| Cow position: | chr1:57696351-57696138 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 183-383 |
| Cow position: | chr1:101012581-101012380 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 164 |
| Conread position: | 204-429 |
| Cow position: | chr1:72093264-72093041 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 435-575 |
| Cow position: | chr1:27311205-27311063 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 119 |
Show alignments to all cow chromosomes.