Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 2-383 |
| Cow position: | chr11:43513554-43513163 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 288 |
| Conread position: | 30-338 |
| Cow position: | chr11:10848550-10848871 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 30-377 |
| Cow position: | chr11:41169598-41169233 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 202 |
| Conread position: | 30-383 |
| Cow position: | chr11:3494087-3494455 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr11:23249372-23249004 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 30-383 |
| Cow position: | chr11:23881129-23881487 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 63 |
| Conread position: | 30-383 |
| Cow position: | chr11:24394413-24394779 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 30-383 |
| Cow position: | chr11:27668899-27668529 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 30-383 |
| Cow position: | chr11:44517766-44517400 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr11:44582244-44581877 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-383 |
| Cow position: | chr11:47738442-47738082 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr11:53430933-53430567 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 210 |
| Conread position: | 30-383 |
| Cow position: | chr11:58135492-58135854 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 201 |
| Conread position: | 30-383 |
| Cow position: | chr11:67845472-67845106 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 30-391 |
| Cow position: | chr11:32452926-32453308 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 30-392 |
| Cow position: | chr11:17106584-17106208 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 351 |
| Conread position: | 30-392 |
| Cow position: | chr11:17547261-17547632 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 30-392 |
| Cow position: | chr11:63654236-63653856 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 255 |
| Conread position: | 30-437 |
| Cow position: | chr11:15943266-15942864 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 31-383 |
| Cow position: | chr11:9733578-9733217 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 34-341 |
| Cow position: | chr11:13524764-13524468 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 226, 38 |
| Conread position: | 34-383 |
| Cow position: | chr11:19101391-19101024 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 34-389 |
| Cow position: | chr11:40581496-40581855 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 34-389 |
| Cow position: | chr11:54254548-54254915 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 147 |
| Conread position: | 34-391 |
| Cow position: | chr11:72309936-72309563 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 34-393 |
| Cow position: | chr11:63163843-63163481 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 157, 42 |
| Conread position: | 34-421 |
| Cow position: | chr11:4191644-4192035 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 213 |
| Conread position: | 35-346 |
| Cow position: | chr11:9302333-9302009 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 35-388 |
| Cow position: | chr11:10883398-10883757 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 38-382 |
| Cow position: | chr11:13048659-13048303 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 39-383 |
| Cow position: | chr11:28740205-28739843 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 40-313 |
| Cow position: | chr11:30208245-30208524 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 40-386 |
| Cow position: | chr11:35264976-35265325 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 70, 201 |
| Conread position: | 40-389 |
| Cow position: | chr11:37285704-37286064 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 193 |
| Conread position: | 40-392 |
| Cow position: | chr11:63275293-63274942 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 105, 53 |
| Conread position: | 40-393 |
| Cow position: | chr11:16484645-16484977 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 218, 53 |
| Conread position: | 46-392 |
| Cow position: | chr11:12387539-12387889 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 53-392 |
| Cow position: | chr11:3104327-3103973 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 54-383 |
| Cow position: | chr11:30253351-30253689 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 55-391 |
| Cow position: | chr11:19062954-19062600 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 56-383 |
| Cow position: | chr11:26784380-26784715 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 103, 72 |
| Conread position: | 74-390 |
| Cow position: | chr11:21475263-21475593 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 84-392 |
| Cow position: | chr11:54467319-54467619 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 154-388 |
| Cow position: | chr11:73461903-73461668 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 158-383 |
| Cow position: | chr11:32079548-32079322 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 167-388 |
| Cow position: | chr11:64963303-64963524 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 171-336 |
| Cow position: | chr11:35135227-35135386 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 171-338 |
| Cow position: | chr11:54483738-54483571 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-393 |
| Cow position: | chr11:36087487-36087266 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 171-424 |
| Cow position: | chr11:20575023-20574772 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 166, 92 |
| Conread position: | 176-383 |
| Cow position: | chr11:86876626-86876418 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 176-391 |
| Cow position: | chr11:61399847-61399628 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 181-413 |
| Cow position: | chr11:85652968-85653199 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 79, 124 |
| Conread position: | 185-383 |
| Cow position: | chr11:4062643-4062447 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 127 |
| Conread position: | 186-371 |
| Cow position: | chr11:24484472-24484657 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 187-388 |
| Cow position: | chr11:76577538-76577742 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 202 |
| Conread position: | 199-383 |
| Cow position: | chr11:47728411-47728226 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.