Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 13-383 |
| Cow position: | chr16:41753939-41753549 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 19-383 |
| Cow position: | chr16:2726528-2726151 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 30-328 |
| Cow position: | chr16:39824621-39824930 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 215 |
| Conread position: | 30-334 |
| Cow position: | chr16:10568344-10568645 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 30-382 |
| Cow position: | chr16:3330635-3330993 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 129, 65 |
| Conread position: | 30-382 |
| Cow position: | chr16:19778953-19778589 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr16:838014-838376 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 254 |
| Conread position: | 30-383 |
| Cow position: | chr16:5485425-5485787 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 100 |
| Conread position: | 30-383 |
| Cow position: | chr16:10374900-10374539 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 58, 257 |
| Conread position: | 30-383 |
| Cow position: | chr16:25456781-25456417 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 30-383 |
| Cow position: | chr16:27594203-27594571 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 201 |
| Conread position: | 30-383 |
| Cow position: | chr16:27732686-27732318 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-383 |
| Cow position: | chr16:29047721-29048086 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 30-383 |
| Cow position: | chr16:34530996-34531351 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 30-383 |
| Cow position: | chr16:40295464-40295103 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 56, 231 |
| Conread position: | 30-388 |
| Cow position: | chr16:32883409-32883042 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 57 |
| Conread position: | 30-391 |
| Cow position: | chr16:15185774-15186153 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 301 |
| Conread position: | 34-382 |
| Cow position: | chr16:46500899-46501263 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 34-383 |
| Cow position: | chr16:2410234-2409870 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 171 |
| Conread position: | 34-383 |
| Cow position: | chr16:7675749-7675394 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 34-389 |
| Cow position: | chr16:32930818-32931161 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 34-393 |
| Cow position: | chr16:27299444-27299076 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 35-383 |
| Cow position: | chr16:1959914-1959562 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 295 |
| Conread position: | 40-380 |
| Cow position: | chr16:707556-707202 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 40-383 |
| Cow position: | chr16:2238058-2237707 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 40-383 |
| Cow position: | chr16:5527679-5527322 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 244 |
| Conread position: | 42-383 |
| Cow position: | chr16:1566743-1566400 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 43-379 |
| Cow position: | chr16:15047750-15047427 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 48-331 |
| Cow position: | chr16:32773837-32773552 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 48-331 |
| Cow position: | chr16:42175595-42175882 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 160 |
| Conread position: | 53-375 |
| Cow position: | chr16:337908-338241 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 54-381 |
| Cow position: | chr16:14665093-14664751 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 54-382 |
| Cow position: | chr16:23535174-23534838 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 54-383 |
| Cow position: | chr16:8815385-8815044 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 54-383 |
| Cow position: | chr16:49221184-49220854 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 54-389 |
| Cow position: | chr16:42240447-42240786 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 61-383 |
| Cow position: | chr16:12668051-12667715 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 84-316 |
| Cow position: | chr16:39366116-39365879 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 191 |
| Conread position: | 148-388 |
| Cow position: | chr16:24764731-24764487 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 153-382 |
| Cow position: | chr16:40654733-40654960 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 165-383 |
| Cow position: | chr16:43846369-43846153 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 166-336 |
| Cow position: | chr16:46628829-46629001 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 166-383 |
| Cow position: | chr16:5119173-5118955 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 166-393 |
| Cow position: | chr16:27823402-27823177 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 107 |
| Conread position: | 168-383 |
| Cow position: | chr16:7465452-7465668 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 169-393 |
| Cow position: | chr16:8665236-8665011 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 171-383 |
| Cow position: | chr16:3828489-3828277 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 185, 98 |
| Conread position: | 171-396 |
| Cow position: | chr16:42869764-42869541 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 173-336 |
| Cow position: | chr16:25938378-25938541 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-383 |
| Cow position: | chr16:20193316-20193108 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 179-393 |
| Cow position: | chr16:42060115-42059898 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 48 |
Show alignments to all cow chromosomes.