Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 18-388 |
| Cow position: | chr3:79122301-79121926 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 30-382 |
| Cow position: | chr3:36877342-36876983 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-382 |
| Cow position: | chr3:64016055-64015706 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 96, 118 |
| Conread position: | 30-383 |
| Cow position: | chr3:595446-595804 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:1742641-1743009 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:2368027-2367661 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 265 |
| Conread position: | 30-383 |
| Cow position: | chr3:2709557-2709192 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 30-383 |
| Cow position: | chr3:2870098-2870466 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:2918779-2919142 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:4287399-4287764 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:5993770-5993410 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 189 |
| Conread position: | 30-383 |
| Cow position: | chr3:16224195-16224563 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:20382338-20382713 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 210 |
| Conread position: | 30-383 |
| Cow position: | chr3:23289024-23288656 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 192 |
| Conread position: | 30-383 |
| Cow position: | chr3:24644534-24644891 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 30-383 |
| Cow position: | chr3:29575814-29575446 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 30-383 |
| Cow position: | chr3:30315859-30316225 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 30-383 |
| Cow position: | chr3:40824702-40825070 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 58, 200 |
| Conread position: | 30-383 |
| Cow position: | chr3:64651947-64652286 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 230, 67 |
| Conread position: | 30-383 |
| Cow position: | chr3:68698663-68698297 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 272 |
| Conread position: | 30-383 |
| Cow position: | chr3:68891260-68890899 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 30-383 |
| Cow position: | chr3:72631376-72631734 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 30-383 |
| Cow position: | chr3:78026103-78025744 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 96, 322 |
| Conread position: | 30-384 |
| Cow position: | chr3:48058051-48057682 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 58, 202 |
| Conread position: | 30-387 |
| Cow position: | chr3:82638405-82638773 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 30-391 |
| Cow position: | chr3:3524325-3524700 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 30-391 |
| Cow position: | chr3:5952871-5952498 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 44 |
| Conread position: | 30-391 |
| Cow position: | chr3:6783677-6784054 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-391 |
| Cow position: | chr3:37970356-37970734 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-391 |
| Cow position: | chr3:44925372-44925752 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 256 |
| Conread position: | 34-383 |
| Cow position: | chr3:7313160-7312799 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 106 |
| Conread position: | 34-383 |
| Cow position: | chr3:56100367-56100010 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 34-392 |
| Cow position: | chr3:19799858-19799492 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 35-383 |
| Cow position: | chr3:34506029-34505675 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 40-383 |
| Cow position: | chr3:3840197-3839840 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 231 |
| Conread position: | 40-383 |
| Cow position: | chr3:24457865-24457503 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 40-383 |
| Cow position: | chr3:45034059-45034417 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 40-383 |
| Cow position: | chr3:57483403-57483048 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 40-395 |
| Cow position: | chr3:62503445-62503813 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 57, 254 |
| Conread position: | 41-285 |
| Cow position: | chr3:65207900-65207643 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 48-383 |
| Cow position: | chr3:54291251-54290904 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 54-383 |
| Cow position: | chr3:23206540-23206198 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 269 |
| Conread position: | 54-383 |
| Cow position: | chr3:36863124-36862780 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 54-383 |
| Cow position: | chr3:37626331-37626659 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 54-383 |
| Cow position: | chr3:56295520-56295863 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 54-391 |
| Cow position: | chr3:19720324-19719972 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 299 |
| Conread position: | 57-382 |
| Cow position: | chr3:19945581-19945927 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 70-431 |
| Cow position: | chr3:72163628-72163257 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 90, 141 |
| Conread position: | 84-383 |
| Cow position: | chr3:53516975-53517287 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 84-393 |
| Cow position: | chr3:45983060-45982743 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 228 |
| Conread position: | 91-390 |
| Cow position: | chr3:70197593-70197911 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 43, 281 |
| Conread position: | 109-393 |
| Cow position: | chr3:63946535-63946818 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 114-338 |
| Cow position: | chr3:42053273-42053046 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 124-390 |
| Cow position: | chr3:57979000-57978737 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 155-393 |
| Cow position: | chr3:71205876-71206114 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 158-378 |
| Cow position: | chr3:31319813-31320029 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 73 |
| Conread position: | 158-389 |
| Cow position: | chr3:23944085-23943854 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 162-383 |
| Cow position: | chr3:58784700-58784478 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 166-383 |
| Cow position: | chr3:21028158-21027940 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 94, 150 |
| Conread position: | 166-383 |
| Cow position: | chr3:43191832-43191614 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 166-383 |
| Cow position: | chr3:51857231-51857013 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 166-392 |
| Cow position: | chr3:8438500-8438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 150 |
| Conread position: | 171-393 |
| Cow position: | chr3:58167140-58167363 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 171-393 |
| Cow position: | chr3:69099375-69099156 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 171-393 |
| Cow position: | chr3:78908522-78908302 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 176-391 |
| Cow position: | chr3:19940400-19940615 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 150, 93 |
| Conread position: | 185-316 |
| Cow position: | chr3:12689194-12689060 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 185-391 |
| Cow position: | chr3:4736447-4736242 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 106 |
Show alignments to all cow chromosomes.