Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 17-380 |
| Cow position: | chr5:34287030-34286656 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 111, 299 |
| Conread position: | 19-379 |
| Cow position: | chr5:23230196-23230558 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 29-340 |
| Cow position: | chr5:48736990-48736677 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 30-313 |
| Cow position: | chr5:44219263-44219564 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 40 |
| Conread position: | 30-382 |
| Cow position: | chr5:55629210-55629566 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 30-383 |
| Cow position: | chr5:4017982-4017630 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 30-383 |
| Cow position: | chr5:4386453-4386806 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 315 |
| Conread position: | 30-383 |
| Cow position: | chr5:5104438-5104799 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 94 |
| Conread position: | 30-383 |
| Cow position: | chr5:7275056-7275413 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 30-383 |
| Cow position: | chr5:10775047-10774679 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 61, 205 |
| Conread position: | 30-383 |
| Cow position: | chr5:10813534-10813166 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 30-383 |
| Cow position: | chr5:10842165-10841796 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 292 |
| Conread position: | 30-383 |
| Cow position: | chr5:10855601-10855234 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 202 |
| Conread position: | 30-383 |
| Cow position: | chr5:12731498-12731131 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 88 |
| Conread position: | 30-383 |
| Cow position: | chr5:18121266-18120898 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr5:23959113-23958746 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 30-383 |
| Cow position: | chr5:30580560-30580919 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 30-383 |
| Cow position: | chr5:32773981-32774349 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr5:35527155-35527508 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 54 |
| Conread position: | 30-383 |
| Cow position: | chr5:37733565-37733937 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 30-383 |
| Cow position: | chr5:40923430-40923092 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 210, 66 |
| Conread position: | 30-383 |
| Cow position: | chr5:46737373-46737010 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-387 |
| Cow position: | chr5:31100212-31099848 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 63, 101 |
| Conread position: | 30-391 |
| Cow position: | chr5:987852-987473 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-391 |
| Cow position: | chr5:2915658-2916029 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 30-391 |
| Cow position: | chr5:18560190-18559815 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 58, 290 |
| Conread position: | 30-391 |
| Cow position: | chr5:24295831-24296196 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 58, 259 |
| Conread position: | 30-391 |
| Cow position: | chr5:46628165-46627807 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 71, 161 |
| Conread position: | 30-391 |
| Cow position: | chr5:59061854-59062231 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 30-395 |
| Cow position: | chr5:35301314-35301694 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 34-280 |
| Cow position: | chr5:62202873-62203126 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 34-383 |
| Cow position: | chr5:4684584-4684221 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 34-388 |
| Cow position: | chr5:4070441-4070807 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 34-393 |
| Cow position: | chr5:674155-674508 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 91, 82 |
| Conread position: | 35-338 |
| Cow position: | chr5:28242253-28242553 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 40-382 |
| Cow position: | chr5:13046883-13047221 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 220, 53 |
| Conread position: | 40-383 |
| Cow position: | chr5:10920065-10920419 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 40-388 |
| Cow position: | chr5:5305811-5306146 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 37 |
| Conread position: | 40-391 |
| Cow position: | chr5:40789291-40789649 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 40-398 |
| Cow position: | chr5:18887319-18886957 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 43-395 |
| Cow position: | chr5:75624921-75625291 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 46-277 |
| Cow position: | chr5:21918650-21918874 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 54-338 |
| Cow position: | chr5:25441497-25441788 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 108, 39 |
| Conread position: | 54-383 |
| Cow position: | chr5:6587348-6587004 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 54-383 |
| Cow position: | chr5:24099897-24100233 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 54-383 |
| Cow position: | chr5:31255711-31256045 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 56-393 |
| Cow position: | chr5:18549405-18549742 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 80, 119 |
| Conread position: | 56-435 |
| Cow position: | chr5:66860459-66860075 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 59-383 |
| Cow position: | chr5:40131358-40131018 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 59-391 |
| Cow position: | chr5:1665180-1665521 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 71-393 |
| Cow position: | chr5:2325278-2324953 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 85-389 |
| Cow position: | chr5:27892380-27892078 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 87-379 |
| Cow position: | chr5:51744557-51744852 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 255 |
| Conread position: | 90-406 |
| Cow position: | chr5:23939202-23939519 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 148-423 |
| Cow position: | chr5:74474517-74474796 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 199 |
| Conread position: | 152-388 |
| Cow position: | chr5:39992366-39992600 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 153-393 |
| Cow position: | chr5:14658098-14657858 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-375 |
| Cow position: | chr5:33282894-33282677 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 158-383 |
| Cow position: | chr5:31122229-31122003 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 166-382 |
| Cow position: | chr5:34698016-34698234 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 171-366 |
| Cow position: | chr5:22839166-22838971 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 171-366 |
| Cow position: | chr5:51369641-51369445 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 176-383 |
| Cow position: | chr5:20108277-20108486 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 176-383 |
| Cow position: | chr5:37378502-37378710 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 189-393 |
| Cow position: | chr5:66495698-66495901 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 45 |
Show alignments to all cow chromosomes.