Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 19-383 |
| Cow position: | chr6:27528670-27528298 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 32 |
| Conread position: | 29-389 |
| Cow position: | chr6:42441735-42442099 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 99, 55 |
| Conread position: | 30-366 |
| Cow position: | chr6:47047827-47047476 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-382 |
| Cow position: | chr6:184188-183822 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 30-382 |
| Cow position: | chr6:43619077-43619444 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 201 |
| Conread position: | 30-383 |
| Cow position: | chr6:50250-49884 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 271 |
| Conread position: | 30-383 |
| Cow position: | chr6:476892-477261 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-383 |
| Cow position: | chr6:703567-703933 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 96, 213 |
| Conread position: | 30-383 |
| Cow position: | chr6:914989-915353 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 30-383 |
| Cow position: | chr6:1535219-1534861 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 30-383 |
| Cow position: | chr6:3150588-3150957 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 30-383 |
| Cow position: | chr6:12664966-12664599 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-383 |
| Cow position: | chr6:15139820-15139452 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 30-383 |
| Cow position: | chr6:24240761-24241126 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 63, 297 |
| Conread position: | 30-383 |
| Cow position: | chr6:26669508-26669141 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 180 |
| Conread position: | 30-383 |
| Cow position: | chr6:27170934-27171301 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 69, 201 |
| Conread position: | 30-383 |
| Cow position: | chr6:28187466-28187117 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 30-383 |
| Cow position: | chr6:36528566-36528919 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 30-383 |
| Cow position: | chr6:40276437-40276804 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 30-383 |
| Cow position: | chr6:40379277-40378910 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 60, 238 |
| Conread position: | 30-383 |
| Cow position: | chr6:44002027-44002393 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 292 |
| Conread position: | 30-383 |
| Cow position: | chr6:45587305-45587669 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 30-383 |
| Cow position: | chr6:58601835-58602201 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 69 |
| Conread position: | 30-388 |
| Cow position: | chr6:51731438-51731807 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 129, 70 |
| Conread position: | 30-391 |
| Cow position: | chr6:7139987-7139608 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-391 |
| Cow position: | chr6:28490212-28489837 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 30-391 |
| Cow position: | chr6:28703356-28702977 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-391 |
| Cow position: | chr6:39910692-39911061 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 30-396 |
| Cow position: | chr6:2376038-2376409 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 69 |
| Conread position: | 34-382 |
| Cow position: | chr6:11723835-11723478 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 99, 61 |
| Conread position: | 34-383 |
| Cow position: | chr6:15891838-15891482 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 63, 267 |
| Conread position: | 34-383 |
| Cow position: | chr6:35939372-35939721 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 34-383 |
| Cow position: | chr6:44262116-44261758 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 34-384 |
| Cow position: | chr6:40326775-40327141 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 34-392 |
| Cow position: | chr6:3571952-3572325 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 40-383 |
| Cow position: | chr6:21835820-21835477 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 40-383 |
| Cow position: | chr6:40865957-40865605 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 223 |
| Conread position: | 41-388 |
| Cow position: | chr6:33108088-33107735 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 154 |
| Conread position: | 43-393 |
| Cow position: | chr6:63465556-63465201 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 48-384 |
| Cow position: | chr6:41228817-41229166 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 54-286 |
| Cow position: | chr6:31301697-31301937 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 54-378 |
| Cow position: | chr6:20559727-20559405 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 163 |
| Conread position: | 54-383 |
| Cow position: | chr6:330086-329744 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 191 |
| Conread position: | 54-391 |
| Cow position: | chr6:1821249-1820896 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 191 |
| Conread position: | 90-393 |
| Cow position: | chr6:34058506-34058197 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 90-398 |
| Cow position: | chr6:16515991-16516305 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 98-393 |
| Cow position: | chr6:48420154-48419858 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 166-383 |
| Cow position: | chr6:14390432-14390650 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 172-379 |
| Cow position: | chr6:29406813-29406610 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 147, 91 |
| Conread position: | 173-382 |
| Cow position: | chr6:57471178-57471388 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 185-383 |
| Cow position: | chr6:59502886-59503082 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 131 |
| Conread position: | 186-383 |
| Cow position: | chr6:32345919-32345725 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 61 |
Show alignments to all cow chromosomes.