Cow genome map
| Conread name: | LyN1-MLN01D100072 |
| Conread position: | 1-311 |
| Cow position: | chr9:35594825-35594503 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 21-431 |
| Cow position: | chr9:4283254-4283660 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 24-383 |
| Cow position: | chr9:5005262-5005636 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 24-392 |
| Cow position: | chr9:26567879-26568255 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 253 |
| Conread position: | 29-312 |
| Cow position: | chr9:20176424-20176144 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 30-382 |
| Cow position: | chr9:38677430-38677794 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 30-383 |
| Cow position: | chr9:3309899-3310265 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 30-383 |
| Cow position: | chr9:6250584-6250935 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 30-383 |
| Cow position: | chr9:8781626-8781277 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 61, 149 |
| Conread position: | 30-383 |
| Cow position: | chr9:17304692-17304325 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 58, 194 |
| Conread position: | 30-383 |
| Cow position: | chr9:18508540-18508175 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 212 |
| Conread position: | 30-383 |
| Cow position: | chr9:21410584-21410956 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 209 |
| Conread position: | 30-383 |
| Cow position: | chr9:27036185-27036551 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 30-383 |
| Cow position: | chr9:31808867-31809226 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 111, 68 |
| Conread position: | 30-383 |
| Cow position: | chr9:37161527-37161166 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 63 |
| Conread position: | 30-383 |
| Cow position: | chr9:50093954-50093586 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 60, 238 |
| Conread position: | 30-383 |
| Cow position: | chr9:50791996-50792366 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-383 |
| Cow position: | chr9:64015387-64015021 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 30-391 |
| Cow position: | chr9:27935663-27936042 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 30-391 |
| Cow position: | chr9:47043243-47043622 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 30-391 |
| Cow position: | chr9:51180896-51180518 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 30-394 |
| Cow position: | chr9:30828024-30828405 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 34-362 |
| Cow position: | chr9:46460769-46460439 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 34-383 |
| Cow position: | chr9:30673667-30674030 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 34-392 |
| Cow position: | chr9:22436254-22436610 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 35-383 |
| Cow position: | chr9:13119013-13118658 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 35-383 |
| Cow position: | chr9:31066006-31066369 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 40-392 |
| Cow position: | chr9:21110831-21111177 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 40-393 |
| Cow position: | chr9:867346-866988 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 40-396 |
| Cow position: | chr9:10547950-10548314 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 42-383 |
| Cow position: | chr9:9014372-9014721 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 43-383 |
| Cow position: | chr9:54925835-54926185 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 183 |
| Conread position: | 48-383 |
| Cow position: | chr9:4308060-4307714 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 54-308 |
| Cow position: | chr9:8167859-8167604 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 54-383 |
| Cow position: | chr9:1250690-1250347 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 54-383 |
| Cow position: | chr9:27783494-27783836 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 56-383 |
| Cow position: | chr9:779510-779171 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 230 |
| Conread position: | 62-391 |
| Cow position: | chr9:64026756-64027091 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 163-391 |
| Cow position: | chr9:6709388-6709620 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 165-366 |
| Cow position: | chr9:49515049-49514851 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 166-383 |
| Cow position: | chr9:10976548-10976766 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 166-392 |
| Cow position: | chr9:9647575-9647801 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 94, 150 |
| Conread position: | 171-383 |
| Cow position: | chr9:9462384-9462172 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 176-387 |
| Cow position: | chr9:17069484-17069271 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 186-392 |
| Cow position: | chr9:56302999-56302792 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 186-392 |
| Cow position: | chr9:59509708-59509498 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 187-392 |
| Cow position: | chr9:29044309-29044103 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.