Cow genome map

Conread name: LyN1-MLN01D100072

Conread position: 30-311
Cow position: chrX:25071289-25071015 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 174

Conread position: 30-370
Cow position: chrX:2481440-2481088 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 226
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 67, 208

Conread position: 30-382
Cow position: chrX:674014-673650 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 63, 332

Conread position: 30-382
Cow position: chrX:23389328-23388979 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 232
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 10

Conread position: 30-383
Cow position: chrX:1548170-1548538 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 58, 15

Conread position: 30-383
Cow position: chrX:2577615-2577980 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 238
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 60, 230

Conread position: 30-383
Cow position: chrX:3374718-3374351 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 241
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 60, 10

Conread position: 30-383
Cow position: chrX:3467454-3467089 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 230
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:5282589-5282227 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 234
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 15

Conread position: 30-383
Cow position: chrX:5393657-5393289 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:7753098-7753457 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 238
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 320

Conread position: 30-383
Cow position: chrX:11148144-11147775 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 235
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 30-383
Cow position: chrX:11423061-11423429 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 237
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:12653316-12652947 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:13075505-13075145 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 228
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 61, 106

Conread position: 30-383
Cow position: chrX:13096068-13095706 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 228
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 61, 106

Conread position: 30-383
Cow position: chrX:13447635-13447268 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 241
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 24

Conread position: 30-383
Cow position: chrX:15600338-15600703 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 42

Conread position: 30-383
Cow position: chrX:15979767-15979401 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 241
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 272

Conread position: 30-383
Cow position: chrX:16700888-16701249 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 230
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 83

Conread position: 30-383
Cow position: chrX:16848685-16848333 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 243
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 96, 69

Conread position: 30-383
Cow position: chrX:17477232-17476862 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 240
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 61, 212

Conread position: 30-383
Cow position: chrX:17666603-17666240 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 69, 24

Conread position: 30-383
Cow position: chrX:18452171-18452539 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 30-383
Cow position: chrX:18952487-18952119 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 30-383
Cow position: chrX:20333371-20333002 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:21224664-21225029 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 237
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 64

Conread position: 30-383
Cow position: chrX:21580675-21581043 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 244
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 30-383
Cow position: chrX:21753243-21752884 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 221
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 229

Conread position: 30-383
Cow position: chrX:23278211-23278581 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 30-383
Cow position: chrX:23454829-23454461 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 241
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 60, 0

Conread position: 30-383
Cow position: chrX:26398936-26398568 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 238
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:27084158-27084531 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 243
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 30-383
Cow position: chrX:27592796-27592432 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 232
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 289

Conread position: 30-383
Cow position: chrX:28757454-28757086 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:30201547-30201179 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 236
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 30-383
Cow position: chrX:35531045-35531413 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 238
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 30-388
Cow position: chrX:30729101-30728758 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 234
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 119, 48

Conread position: 30-389
Cow position: chrX:18841819-18841437 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 257
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 209

Conread position: 30-390
Cow position: chrX:30012189-30012567 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 241
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 30-391
Cow position: chrX:14460707-14461074 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 237
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 61, 41

Conread position: 30-391
Cow position: chrX:14596037-14596413 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 244
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 30-391
Cow position: chrX:37957865-37957486 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 251
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 238

Conread position: 30-394
Cow position: chrX:15126036-15125661 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 244
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 63

Conread position: 30-430
Cow position: chrX:16405808-16406203 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 267
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 59, 118

Conread position: 30-575
Cow position: chrX:26529158-26529740 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 362
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 103, 61

Conread position: 34-333
Cow position: chrX:34448722-34449025 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 202
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 155

Conread position: 34-380
Cow position: chrX:19725792-19725445 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 231
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 91

Conread position: 34-383
Cow position: chrX:3083943-3083580 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 235
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 34-383
Cow position: chrX:9093837-9094201 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 197

Conread position: 34-383
Cow position: chrX:11463853-11463489 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 242
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 34-383
Cow position: chrX:16361926-16361562 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 34-383
Cow position: chrX:24324371-24324007 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 11

Conread position: 34-383
Cow position: chrX:30436038-30436402 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 237
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 34-383
Cow position: chrX:37813346-37813704 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 233
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 195

Conread position: 34-391
Cow position: chrX:2534876-2534514 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 234
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 58, 122

Conread position: 34-392
Cow position: chrX:17609128-17608759 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 230
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 224

Conread position: 34-393
Cow position: chrX:24168851-24168488 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 94, 210

Conread position: 35-388
Cow position: chrX:7549521-7549183 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 11

Conread position: 36-391
Cow position: chrX:21643706-21643347 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 224
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 118

Conread position: 40-303
Cow position: chrX:6197998-6197731 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 71

Conread position: 40-316
Cow position: chrX:28868042-28867757 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 188
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 58

Conread position: 40-383
Cow position: chrX:2815283-2814925 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 30

Conread position: 40-383
Cow position: chrX:2858177-2857819 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 30

Conread position: 41-316
Cow position: chrX:25613259-25613538 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 43

Conread position: 41-383
Cow position: chrX:23328603-23328242 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 54, 83

Conread position: 42-377
Cow position: chrX:40017215-40016882 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 222
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 19

Conread position: 49-392
Cow position: chrX:20184452-20184804 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 97

Conread position: 53-383
Cow position: chrX:971981-972336 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 233
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 53-391
Cow position: chrX:20798520-20798870 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 222
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 53-393
Cow position: chrX:4300970-4300617 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 228
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 34

Conread position: 54-333
Cow position: chrX:2977878-2977584 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 214

Conread position: 54-383
Cow position: chrX:321679-322023 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 222
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 191

Conread position: 54-393
Cow position: chrX:17528113-17528466 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 226
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 147

Conread position: 58-383
Cow position: chrX:7094686-7095026 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 224
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 187

Conread position: 84-383
Cow position: chrX:30068593-30068284 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 200
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 10

Conread position: 87-393
Cow position: chrX:43791907-43791591 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 53

Conread position: 140-318
Cow position: chrX:1689247-1689068 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 127

Conread position: 152-393
Cow position: chrX:1012712-1012960 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 110

Conread position: 156-397
Cow position: chrX:16860843-16860610 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 156, 75

Conread position: 158-393
Cow position: chrX:4412189-4412426 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 224, 115

Conread position: 158-393
Cow position: chrX:33584716-33584951 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 79, 72

Conread position: 165-383
Cow position: chrX:23907463-23907241 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 165-388
Cow position: chrX:24953221-24952999 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 73

Conread position: 165-393
Cow position: chrX:24525339-24525568 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 151

Conread position: 165-439
Cow position: chrX:24997655-24997389 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 66

Conread position: 166-388
Cow position: chrX:3622426-3622647 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 149
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 134, 103

Conread position: 166-398
Cow position: chrX:1784905-1785135 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 172-383
Cow position: chrX:36072396-36072184 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 54, 45

Conread position: 173-393
Cow position: chrX:24808214-24807990 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 86, 42

Conread position: 176-383
Cow position: chrX:1942016-1941808 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 133

Conread position: 176-383
Cow position: chrX:10530439-10530232 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 176-383
Cow position: chrX:12354873-12355080 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 140

Conread position: 176-383
Cow position: chrX:21791964-21792172 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 176-383
Cow position: chrX:28664745-28664953 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 188-584
Cow position: chrX:23318541-23318151 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 257
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 33

Conread position: 224-405
Cow position: chrX:27644473-27644654 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 158, 33

Show alignments to all cow chromosomes.