Cow genome map

Conread name: LyN1-MLN01D110012

Conread position: 8-512
Cow position: chr1:99824746-99825271 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 6

Conread position: 17-509
Cow position: chr1:93443476-93443984 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 284

Conread position: 24-513
Cow position: chr1:38110356-38110861 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 61

Conread position: 28-260
Cow position: chr1:20969576-20969812 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 181, 218

Conread position: 28-334
Cow position: chr1:87120515-87120827 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 212

Conread position: 28-509
Cow position: chr1:68371837-68371350 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 325
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 78, 82

Conread position: 29-146
Cow position: chr1:15754153-15754036 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 30-511
Cow position: chr1:93247290-93247781 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 23

Conread position: 30-512
Cow position: chr1:19557863-19558347 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 144

Conread position: 30-514
Cow position: chr1:14663248-14662750 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 261

Conread position: 31-334
Cow position: chr1:92386636-92386340 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 190

Conread position: 31-512
Cow position: chr1:28653468-28653955 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 190

Conread position: 31-512
Cow position: chr1:85847559-85847099 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 182, 66

Conread position: 31-513
Cow position: chr1:4787471-4787958 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 86

Conread position: 32-510
Cow position: chr1:12018614-12018125 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 300

Conread position: 33-498
Cow position: chr1:90816366-90815892 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 89

Conread position: 33-510
Cow position: chr1:89080885-89081375 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 292

Conread position: 33-511
Cow position: chr1:51764863-51764374 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 263

Conread position: 33-512
Cow position: chr1:77374660-77375149 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 264

Conread position: 34-260
Cow position: chr1:19974867-19974633 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 90

Conread position: 34-473
Cow position: chr1:59393503-59393948 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 308
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 131

Conread position: 34-512
Cow position: chr1:33458547-33458041 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 333
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 118, 81

Conread position: 34-512
Cow position: chr1:44187069-44187535 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 180

Conread position: 35-509
Cow position: chr1:37915947-37915466 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 11

Conread position: 35-509
Cow position: chr1:62220772-62221254 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 256

Conread position: 35-509
Cow position: chr1:94762475-94762960 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 321
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 84, 25

Conread position: 36-498
Cow position: chr1:51056334-51056791 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 251

Conread position: 36-509
Cow position: chr1:4190209-4190694 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 337
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 115, 132

Conread position: 36-509
Cow position: chr1:15205322-15205805 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 333
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 87

Conread position: 36-509
Cow position: chr1:17904039-17904516 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 13

Conread position: 36-509
Cow position: chr1:87741103-87741585 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 85

Conread position: 36-510
Cow position: chr1:30083872-30083408 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 322
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 18, 106

Conread position: 36-510
Cow position: chr1:68374510-68374026 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 260

Conread position: 36-539
Cow position: chr1:55332361-55332886 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 196

Conread position: 37-176
Cow position: chr1:84247059-84246922 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 37-192
Cow position: chr1:3446225-3446068 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 37-215
Cow position: chr1:17423126-17422951 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 37, 0

Conread position: 37-260
Cow position: chr1:83321213-83320994 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 179, 79

Conread position: 37-276
Cow position: chr1:42167447-42167207 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 199, 129

Conread position: 37-334
Cow position: chr1:28736560-28736277 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 37-334
Cow position: chr1:96088613-96088905 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 22, 45

Conread position: 37-476
Cow position: chr1:83146748-83146295 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 133

Conread position: 37-496
Cow position: chr1:15123472-15123936 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 309
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 178, 146

Conread position: 37-498
Cow position: chr1:39287976-39287507 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 254

Conread position: 37-498
Cow position: chr1:85058784-85058339 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 184

Conread position: 37-504
Cow position: chr1:27873554-27873085 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 331
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 292, 56

Conread position: 37-508
Cow position: chr1:62401747-62401276 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 184

Conread position: 37-508
Cow position: chr1:75437706-75437226 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 293

Conread position: 37-509
Cow position: chr1:25393172-25392703 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 184

Conread position: 37-509
Cow position: chr1:26948223-26948706 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 295

Conread position: 37-509
Cow position: chr1:61157986-61157507 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 321
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 110

Conread position: 37-509
Cow position: chr1:62445173-62444693 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 254

Conread position: 37-509
Cow position: chr1:64751892-64752379 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 262

Conread position: 37-509
Cow position: chr1:65933646-65933167 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 254

Conread position: 37-509
Cow position: chr1:70162292-70161812 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 81

Conread position: 37-509
Cow position: chr1:73690655-73690172 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 275

Conread position: 37-509
Cow position: chr1:74010107-74009639 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 12

Conread position: 37-509
Cow position: chr1:94026703-94027189 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 84

Conread position: 37-510
Cow position: chr1:11319503-11319019 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 288

Conread position: 37-510
Cow position: chr1:80624708-80624228 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 12

Conread position: 38-197
Cow position: chr1:34356997-34356838 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 38-473
Cow position: chr1:93128365-93128804 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 115

Conread position: 39-219
Cow position: chr1:13557939-13558119 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 39-258
Cow position: chr1:64757073-64757295 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 176, 143

Conread position: 39-266
Cow position: chr1:94019569-94019803 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 176, 201

Conread position: 39-504
Cow position: chr1:8046440-8046918 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 322
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 202, 182

Conread position: 39-509
Cow position: chr1:64746982-64747470 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 39-509
Cow position: chr1:67850746-67850265 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 257

Conread position: 44-260
Cow position: chr1:32452559-32452333 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 12, 144

Conread position: 51-264
Cow position: chr1:21817724-21817508 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 164, 67

Conread position: 59-509
Cow position: chr1:15197318-15197779 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 309
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 13, 64

Conread position: 61-260
Cow position: chr1:75439943-75440143 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 158, 0

Conread position: 64-334
Cow position: chr1:82664126-82663848 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 64-509
Cow position: chr1:58203979-58203529 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 297
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 151, 204

Conread position: 75-215
Cow position: chr1:4313107-4313244 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 82-512
Cow position: chr1:94765614-94765165 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 133, 305

Conread position: 94-311
Cow position: chr1:8149192-8148974 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 121, 47

Conread position: 119-476
Cow position: chr1:6314533-6314169 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 96, 121

Conread position: 122-260
Cow position: chr1:62039691-62039835 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 124-334
Cow position: chr1:41182639-41182420 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 169
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 91, 0

Conread position: 126-264
Cow position: chr1:9711590-9711734 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 166-332
Cow position: chr1:67968231-67968058 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 329-447
Cow position: chr1:3446018-3445898 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 361-515
Cow position: chr1:67967998-67967830 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 362-509
Cow position: chr1:41182358-41182214 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 112

Conread position: 362-509
Cow position: chr1:82663785-82663636 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 362-512
Cow position: chr1:87120889-87121041 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 363-509
Cow position: chr1:32451165-32451017 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.