Cow genome map
| Conread name: | LyN1-MLN01D110012 |
| Conread position: | 1-510 |
| Cow position: | chr11:24916520-24916025 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 343 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 6, 174 |
| Conread position: | 16-509 |
| Cow position: | chr11:15303188-15303676 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 9 |
| Conread position: | 21-173 |
| Cow position: | chr11:16828173-16828021 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-260 |
| Cow position: | chr11:64037454-64037209 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 28-509 |
| Cow position: | chr11:32266139-32266631 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 269 |
| Conread position: | 29-505 |
| Cow position: | chr11:61619024-61618550 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 191, 162 |
| Conread position: | 29-512 |
| Cow position: | chr11:5533953-5534432 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 124 |
| Conread position: | 30-273 |
| Cow position: | chr11:2682198-2682446 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 30-509 |
| Cow position: | chr11:63150202-63150694 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 261 |
| Conread position: | 32-509 |
| Cow position: | chr11:57378710-57378231 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 182 |
| Conread position: | 32-539 |
| Cow position: | chr11:18923370-18922856 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 34-260 |
| Cow position: | chr11:39996479-39996699 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 165 |
| Conread position: | 34-334 |
| Cow position: | chr11:16790881-16790597 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 34-473 |
| Cow position: | chr11:19830486-19830946 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 153 |
| Conread position: | 34-512 |
| Cow position: | chr11:30530397-30529908 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 278 |
| Conread position: | 34-512 |
| Cow position: | chr11:31440657-31441144 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 250 |
| Conread position: | 34-513 |
| Cow position: | chr11:32079612-32080102 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 261 |
| Conread position: | 34-529 |
| Cow position: | chr11:65816593-65816096 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 187 |
| Conread position: | 34-531 |
| Cow position: | chr11:76395416-76394909 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 114 |
| Conread position: | 35-203 |
| Cow position: | chr11:42758311-42758476 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 35-251 |
| Cow position: | chr11:9173719-9173940 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 35-498 |
| Cow position: | chr11:13919655-13919194 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 317 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 180, 42 |
| Conread position: | 35-505 |
| Cow position: | chr11:7055843-7056318 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 86 |
| Conread position: | 35-509 |
| Cow position: | chr11:48799487-48799971 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 268 |
| Conread position: | 35-530 |
| Cow position: | chr11:46872642-46873151 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 135 |
| Conread position: | 36-264 |
| Cow position: | chr11:36263809-36263572 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 171, 42 |
| Conread position: | 36-334 |
| Cow position: | chr11:1631354-1631638 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 36-396 |
| Cow position: | chr11:56514337-56513974 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 105 |
| Conread position: | 36-509 |
| Cow position: | chr11:1639624-1640107 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 36-509 |
| Cow position: | chr11:13615977-13616461 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 255 |
| Conread position: | 36-509 |
| Cow position: | chr11:68243665-68244136 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 220, 121 |
| Conread position: | 37-144 |
| Cow position: | chr11:16296761-16296868 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-162 |
| Cow position: | chr11:73326434-73326560 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 37-193 |
| Cow position: | chr11:8097322-8097478 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-218 |
| Cow position: | chr11:10369177-10369355 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 37-227 |
| Cow position: | chr11:37326604-37326789 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 37-334 |
| Cow position: | chr11:31720137-31720433 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 167, 17 |
| Conread position: | 37-504 |
| Cow position: | chr11:3807158-3806696 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 180 |
| Conread position: | 37-504 |
| Cow position: | chr11:48721588-48722063 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 146 |
| Conread position: | 37-504 |
| Cow position: | chr11:82378051-82377559 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 144, 174 |
| Conread position: | 37-505 |
| Cow position: | chr11:70057494-70057951 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 309, 184 |
| Conread position: | 37-508 |
| Cow position: | chr11:8656836-8656359 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 37-509 |
| Cow position: | chr11:18187855-18188338 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 256 |
| Conread position: | 37-509 |
| Cow position: | chr11:21164054-21164535 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 232 |
| Conread position: | 37-509 |
| Cow position: | chr11:38545377-38544907 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 179, 7 |
| Conread position: | 37-509 |
| Cow position: | chr11:65815025-65814542 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 259 |
| Conread position: | 37-509 |
| Cow position: | chr11:75071302-75070821 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 156, 59 |
| Conread position: | 37-509 |
| Cow position: | chr11:77553707-77554184 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 184, 9 |
| Conread position: | 37-510 |
| Cow position: | chr11:15423095-15422620 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 211 |
| Conread position: | 38-509 |
| Cow position: | chr11:61224947-61224469 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 46 |
| Conread position: | 39-260 |
| Cow position: | chr11:33942071-33942298 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 39-260 |
| Cow position: | chr11:72539058-72538832 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 182, 41 |
| Conread position: | 39-288 |
| Cow position: | chr11:40003544-40003797 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 182, 77 |
| Conread position: | 39-334 |
| Cow position: | chr11:26137306-26137598 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 39-508 |
| Cow position: | chr11:56828308-56828787 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 131, 102 |
| Conread position: | 43-260 |
| Cow position: | chr11:19222341-19222118 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 43-509 |
| Cow position: | chr11:53681037-53680559 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 253 |
| Conread position: | 45-328 |
| Cow position: | chr11:40495674-40495960 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 88 |
| Conread position: | 48-331 |
| Cow position: | chr11:8383268-8383529 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 281, 19 |
| Conread position: | 75-509 |
| Cow position: | chr11:65837754-65837311 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 301 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 16, 217 |
| Conread position: | 76-498 |
| Cow position: | chr11:35534139-35534566 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 81, 109 |
| Conread position: | 81-331 |
| Cow position: | chr11:18621566-18621825 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 85-513 |
| Cow position: | chr11:18183272-18182832 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 298 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 130, 209 |
| Conread position: | 89-510 |
| Cow position: | chr11:34807802-34807381 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 240, 131 |
| Conread position: | 119-260 |
| Cow position: | chr11:31605803-31605950 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 362-502 |
| Cow position: | chr11:40496030-40496171 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.