Cow genome map
| Conread name: | LyN1-MLN01D110012 |
| Conread position: | 24-513 |
| Cow position: | chr16:55460964-55460472 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 124 |
| Conread position: | 26-334 |
| Cow position: | chr16:3884746-3885040 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 195 |
| Conread position: | 26-334 |
| Cow position: | chr16:34946788-34947096 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 55 |
| Conread position: | 28-513 |
| Cow position: | chr16:11299875-11299375 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 192, 53 |
| Conread position: | 28-514 |
| Cow position: | chr16:35411067-35411561 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 18 |
| Conread position: | 29-396 |
| Cow position: | chr16:55253323-55253688 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 191, 52 |
| Conread position: | 30-219 |
| Cow position: | chr16:3882898-3882709 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-509 |
| Cow position: | chr16:53810950-53811447 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 52 |
| Conread position: | 31-532 |
| Cow position: | chr16:30580404-30580908 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 190 |
| Conread position: | 32-524 |
| Cow position: | chr16:34778590-34779087 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 236 |
| Conread position: | 34-479 |
| Cow position: | chr16:19679827-19680275 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 267 |
| Conread position: | 34-509 |
| Cow position: | chr16:19260931-19261414 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 257 |
| Conread position: | 34-509 |
| Cow position: | chr16:23968168-23967694 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 65 |
| Conread position: | 35-498 |
| Cow position: | chr16:2782691-2783155 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 185 |
| Conread position: | 35-509 |
| Cow position: | chr16:12381959-12382444 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 261 |
| Conread position: | 35-509 |
| Cow position: | chr16:35442332-35442820 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 113 |
| Conread position: | 35-510 |
| Cow position: | chr16:3879694-3879208 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 186 |
| Conread position: | 35-518 |
| Cow position: | chr16:1626608-1626120 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 36-260 |
| Cow position: | chr16:26958501-26958727 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 179, 82 |
| Conread position: | 36-260 |
| Cow position: | chr16:27116655-27116885 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 36-396 |
| Cow position: | chr16:30602667-30602298 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 123, 130 |
| Conread position: | 36-509 |
| Cow position: | chr16:2520241-2519756 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 82 |
| Conread position: | 36-509 |
| Cow position: | chr16:44525040-44525530 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 38 |
| Conread position: | 36-509 |
| Cow position: | chr16:53129065-53128578 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 272 |
| Conread position: | 36-510 |
| Cow position: | chr16:22319466-22318981 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 260 |
| Conread position: | 37-152 |
| Cow position: | chr16:22483345-22483458 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 37-256 |
| Cow position: | chr16:46375570-46375795 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 37-259 |
| Cow position: | chr16:30978378-30978606 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 37-260 |
| Cow position: | chr16:8915258-8915031 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 91 |
| Conread position: | 37-260 |
| Cow position: | chr16:35514097-35513865 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 37-260 |
| Cow position: | chr16:37427609-37427833 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 178, 62 |
| Conread position: | 37-266 |
| Cow position: | chr16:32768878-32768643 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 37-451 |
| Cow position: | chr16:53835429-53835875 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 37-508 |
| Cow position: | chr16:43170095-43170561 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 164 |
| Conread position: | 37-508 |
| Cow position: | chr16:52807826-52808303 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 37-509 |
| Cow position: | chr16:23524507-23524999 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 172, 65 |
| Conread position: | 37-509 |
| Cow position: | chr16:23950333-23949850 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 259 |
| Conread position: | 37-509 |
| Cow position: | chr16:26371797-26371318 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 254 |
| Conread position: | 37-510 |
| Cow position: | chr16:1156242-1155761 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 287 |
| Conread position: | 37-510 |
| Cow position: | chr16:18061992-18062480 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 37-510 |
| Cow position: | chr16:20979932-20979447 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 333 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 37-511 |
| Cow position: | chr16:31536138-31536617 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 235 |
| Conread position: | 37-522 |
| Cow position: | chr16:50448938-50449430 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 37-571 |
| Cow position: | chr16:2251578-2251039 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 53 |
| Conread position: | 38-509 |
| Cow position: | chr16:53605139-53605612 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 110 |
| Conread position: | 39-219 |
| Cow position: | chr16:1633865-1633686 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 39-258 |
| Cow position: | chr16:43117366-43117582 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 177, 120 |
| Conread position: | 39-260 |
| Cow position: | chr16:22832428-22832653 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 39-260 |
| Cow position: | chr16:43173779-43173557 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 182, 39 |
| Conread position: | 39-476 |
| Cow position: | chr16:54303151-54302710 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 181, 22 |
| Conread position: | 43-512 |
| Cow position: | chr16:4837774-4838251 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 255 |
| Conread position: | 43-514 |
| Cow position: | chr16:37095020-37095502 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 254 |
| Conread position: | 47-328 |
| Cow position: | chr16:27841624-27841905 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 129 |
| Conread position: | 57-258 |
| Cow position: | chr16:33910425-33910626 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 158, 33 |
| Conread position: | 74-333 |
| Cow position: | chr16:18356520-18356766 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 86-297 |
| Cow position: | chr16:17778373-17778590 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 122-479 |
| Cow position: | chr16:5793293-5792936 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 122-510 |
| Cow position: | chr16:46440865-46441264 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 99, 203 |
| Conread position: | 127-264 |
| Cow position: | chr16:31795054-31794911 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 363-507 |
| Cow position: | chr16:17778700-17778843 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 25 |
Show alignments to all cow chromosomes.