Cow genome map
| Conread name: | LyN1-MLN01D110012 |
| Conread position: | 14-511 |
| Cow position: | chr17:38868813-38868305 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 291 |
| Conread position: | 18-259 |
| Cow position: | chr17:6369354-6369110 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 19 |
| Conread position: | 22-225 |
| Cow position: | chr17:4874085-4874288 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-480 |
| Cow position: | chr17:17776284-17775824 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 269 |
| Conread position: | 28-509 |
| Cow position: | chr17:40682380-40682872 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 268 |
| Conread position: | 29-260 |
| Cow position: | chr17:37352698-37352931 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 32-393 |
| Cow position: | chr17:23459852-23460218 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 264 |
| Conread position: | 34-260 |
| Cow position: | chr17:19125831-19126063 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 34-260 |
| Cow position: | chr17:28810027-28810257 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 173, 123 |
| Conread position: | 34-260 |
| Cow position: | chr17:36655582-36655358 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 34-513 |
| Cow position: | chr17:21386319-21386793 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 35-191 |
| Cow position: | chr17:17271140-17270984 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-509 |
| Cow position: | chr17:24583817-24583329 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 332 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 180, 14 |
| Conread position: | 36-211 |
| Cow position: | chr17:1659015-1659190 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-260 |
| Cow position: | chr17:34958280-34958045 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 36-509 |
| Cow position: | chr17:3353782-3353298 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 184 |
| Conread position: | 36-509 |
| Cow position: | chr17:7837136-7837614 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 254 |
| Conread position: | 36-510 |
| Cow position: | chr17:6528431-6527955 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 255 |
| Conread position: | 36-510 |
| Cow position: | chr17:21649531-21649045 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 268 |
| Conread position: | 36-524 |
| Cow position: | chr17:28815307-28815804 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 258 |
| Conread position: | 36-576 |
| Cow position: | chr17:21618985-21619539 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 289 |
| Conread position: | 37-215 |
| Cow position: | chr17:3398765-3398587 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 113, 169 |
| Conread position: | 37-255 |
| Cow position: | chr17:10198527-10198744 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 180, 196 |
| Conread position: | 37-258 |
| Cow position: | chr17:5774295-5774519 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 183, 76 |
| Conread position: | 37-258 |
| Cow position: | chr17:23829867-23829640 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 37-264 |
| Cow position: | chr17:13267297-13267068 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 183, 81 |
| Conread position: | 37-334 |
| Cow position: | chr17:1034250-1033951 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 37-470 |
| Cow position: | chr17:35885021-35884565 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 21, 278 |
| Conread position: | 37-502 |
| Cow position: | chr17:27786359-27785884 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 296 |
| Conread position: | 37-507 |
| Cow position: | chr17:23804470-23803995 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 275 |
| Conread position: | 37-509 |
| Cow position: | chr17:1193072-1192590 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 258 |
| Conread position: | 37-509 |
| Cow position: | chr17:1915842-1916329 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 254 |
| Conread position: | 37-509 |
| Cow position: | chr17:12960070-12959588 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 253 |
| Conread position: | 37-509 |
| Cow position: | chr17:24860732-24861205 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 37-509 |
| Cow position: | chr17:24989602-24989110 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 120 |
| Conread position: | 37-509 |
| Cow position: | chr17:25148568-25149045 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 16 |
| Conread position: | 37-509 |
| Cow position: | chr17:36071414-36071895 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 254 |
| Conread position: | 37-510 |
| Cow position: | chr17:18462113-18462613 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 82 |
| Conread position: | 38-270 |
| Cow position: | chr17:13633643-13633879 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 178, 110 |
| Conread position: | 39-334 |
| Cow position: | chr17:590000-590276 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 40-510 |
| Cow position: | chr17:2466598-2467071 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 177, 252 |
| Conread position: | 43-218 |
| Cow position: | chr17:22841490-22841316 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 47-306 |
| Cow position: | chr17:21568298-21568038 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 166, 105 |
| Conread position: | 50-290 |
| Cow position: | chr17:38599289-38599049 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 50-334 |
| Cow position: | chr17:3967212-3966925 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 171, 93 |
| Conread position: | 69-257 |
| Cow position: | chr17:4555414-4555220 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 74-513 |
| Cow position: | chr17:21383207-21383655 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 75-510 |
| Cow position: | chr17:6102781-6102329 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 213 |
| Conread position: | 94-333 |
| Cow position: | chr17:8299177-8298942 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 122-287 |
| Cow position: | chr17:12587621-12587793 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 366-510 |
| Cow position: | chr17:3966583-3966438 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 366-510 |
| Cow position: | chr17:21567945-21567800 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.