Cow genome map

Conread name: LyN1-MLN01D110012

Conread position: 15-512
Cow position: chr3:45935302-45935809 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 147

Conread position: 22-509
Cow position: chr3:26607236-26607744 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 329
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 194, 281

Conread position: 25-512
Cow position: chr3:19115425-19115918 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 5

Conread position: 26-509
Cow position: chr3:81350306-81349814 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 265

Conread position: 27-166
Cow position: chr3:16984715-16984578 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 27-510
Cow position: chr3:13613378-13613866 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 47

Conread position: 27-511
Cow position: chr3:55263960-55263469 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 265

Conread position: 28-403
Cow position: chr3:22665269-22665653 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 28-509
Cow position: chr3:6462544-6463008 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 316
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 9, 19

Conread position: 29-476
Cow position: chr3:64111684-64111232 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 293

Conread position: 29-515
Cow position: chr3:15057177-15056679 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 130

Conread position: 30-260
Cow position: chr3:60091266-60091030 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 185, 0

Conread position: 30-509
Cow position: chr3:69037243-69036753 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 189

Conread position: 31-236
Cow position: chr3:2470347-2470145 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 130
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 87, 0

Conread position: 31-510
Cow position: chr3:27866334-27865843 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 282

Conread position: 31-511
Cow position: chr3:64509651-64509151 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 301

Conread position: 31-511
Cow position: chr3:78209503-78209978 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 190

Conread position: 31-512
Cow position: chr3:52683558-52683065 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 301

Conread position: 32-509
Cow position: chr3:7864077-7864561 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 264

Conread position: 32-512
Cow position: chr3:14728792-14729281 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 266

Conread position: 32-513
Cow position: chr3:5451568-5451083 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 102

Conread position: 32-514
Cow position: chr3:1466302-1465810 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 37

Conread position: 33-512
Cow position: chr3:34170753-34170272 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 174

Conread position: 33-527
Cow position: chr3:24769393-24768901 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 85

Conread position: 34-197
Cow position: chr3:19206017-19205856 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 34-270
Cow position: chr3:32682525-32682764 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 159

Conread position: 34-391
Cow position: chr3:30994076-30993721 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 247
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 181, 108

Conread position: 34-507
Cow position: chr3:29708154-29708641 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 15

Conread position: 34-519
Cow position: chr3:5452505-5452014 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 253

Conread position: 35-199
Cow position: chr3:10228986-10229150 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 35-214
Cow position: chr3:30766367-30766544 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 0

Conread position: 35-260
Cow position: chr3:78502034-78501803 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 122, 130

Conread position: 35-509
Cow position: chr3:25086462-25085983 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 326
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 181, 145

Conread position: 35-509
Cow position: chr3:45840553-45840071 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 126

Conread position: 35-510
Cow position: chr3:45835326-45834840 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 289

Conread position: 36-191
Cow position: chr3:19201186-19201345 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 123, 0

Conread position: 36-260
Cow position: chr3:6047120-6046887 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 36-273
Cow position: chr3:11713426-11713184 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 83

Conread position: 36-509
Cow position: chr3:7866251-7865768 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 185

Conread position: 36-509
Cow position: chr3:10132120-10131633 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 22

Conread position: 36-509
Cow position: chr3:26611917-26611438 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 157

Conread position: 36-510
Cow position: chr3:42333100-42333574 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 55

Conread position: 36-513
Cow position: chr3:51795883-51796375 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 467

Conread position: 36-514
Cow position: chr3:25718692-25718209 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 82

Conread position: 36-526
Cow position: chr3:8810286-8809788 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 77

Conread position: 37-156
Cow position: chr3:2593807-2593684 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 73

Conread position: 37-157
Cow position: chr3:5425466-5425586 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 37-162
Cow position: chr3:14234850-14234724 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 37-270
Cow position: chr3:51094439-51094672 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 184, 76

Conread position: 37-334
Cow position: chr3:2469852-2470135 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 37-488
Cow position: chr3:3250634-3250175 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 302
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 167, 163

Conread position: 37-493
Cow position: chr3:76509539-76509994 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 126

Conread position: 37-495
Cow position: chr3:52711128-52711593 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 222

Conread position: 37-498
Cow position: chr3:11243956-11243492 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 256

Conread position: 37-498
Cow position: chr3:19206636-19206175 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 37-503
Cow position: chr3:22885273-22885740 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 12

Conread position: 37-505
Cow position: chr3:23831014-23830548 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 319
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 16, 106

Conread position: 37-508
Cow position: chr3:62737581-62737099 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 288

Conread position: 37-509
Cow position: chr3:2409880-2409398 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 276

Conread position: 37-509
Cow position: chr3:28466463-28466941 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 260

Conread position: 37-509
Cow position: chr3:35249030-35249521 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 322
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 60

Conread position: 37-509
Cow position: chr3:56969061-56969537 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 98

Conread position: 37-509
Cow position: chr3:71012549-71012074 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 322
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 100

Conread position: 37-510
Cow position: chr3:7020389-7020872 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 253

Conread position: 37-510
Cow position: chr3:13009271-13009748 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 38

Conread position: 37-510
Cow position: chr3:53803112-53802633 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 141

Conread position: 37-512
Cow position: chr3:7530718-7530231 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 322
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 276

Conread position: 37-513
Cow position: chr3:84917759-84917272 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 37-523
Cow position: chr3:24812523-24812029 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 12

Conread position: 38-287
Cow position: chr3:19474864-19474608 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 177, 73

Conread position: 38-472
Cow position: chr3:7829544-7829113 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 281
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 34, 20

Conread position: 38-498
Cow position: chr3:75163897-75163436 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 316
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 182, 104

Conread position: 38-509
Cow position: chr3:80440797-80441278 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 183

Conread position: 39-260
Cow position: chr3:57722886-57722666 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 178, 25

Conread position: 39-505
Cow position: chr3:34562625-34562140 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 96

Conread position: 40-260
Cow position: chr3:78788757-78788983 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 43-315
Cow position: chr3:61963826-61963558 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 138

Conread position: 44-513
Cow position: chr3:38529541-38530018 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 280

Conread position: 47-331
Cow position: chr3:60064443-60064725 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 21, 14

Conread position: 47-334
Cow position: chr3:8008932-8008642 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 54

Conread position: 53-260
Cow position: chr3:62423879-62423680 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 89, 0

Conread position: 58-260
Cow position: chr3:38280424-38280632 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 157, 0

Conread position: 61-512
Cow position: chr3:2445803-2446265 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 235

Conread position: 72-513
Cow position: chr3:83331264-83331724 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 295
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 142, 323

Conread position: 75-512
Cow position: chr3:81827504-81827950 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 304
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 140, 87

Conread position: 119-510
Cow position: chr3:74477171-74476779 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 269
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 97, 175

Conread position: 138-334
Cow position: chr3:49874158-49873957 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 77, 26

Conread position: 367-509
Cow position: chr3:20352825-20352680 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.