Cow genome map
| Conread name: | LyN1-MLN01D110012 |
| Conread position: | 28-215 |
| Cow position: | chr5:50869304-50869118 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 152 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 29-396 |
| Cow position: | chr5:3039349-3038977 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 300 |
| Conread position: | 30-517 |
| Cow position: | chr5:13540438-13540919 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 178 |
| Conread position: | 31-507 |
| Cow position: | chr5:14896784-14897271 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 133 |
| Conread position: | 31-514 |
| Cow position: | chr5:9967796-9967303 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 228 |
| Conread position: | 31-514 |
| Cow position: | chr5:44903532-44903035 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 60 |
| Conread position: | 32-259 |
| Cow position: | chr5:18779650-18779420 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 35, 163 |
| Conread position: | 32-498 |
| Cow position: | chr5:667030-667493 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 183, 86 |
| Conread position: | 32-512 |
| Cow position: | chr5:63141951-63141465 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 102 |
| Conread position: | 32-513 |
| Cow position: | chr5:3030116-3029626 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 45, 209 |
| Conread position: | 32-514 |
| Cow position: | chr5:17873011-17873484 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 183, 25 |
| Conread position: | 34-334 |
| Cow position: | chr5:66391192-66390906 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 34-509 |
| Cow position: | chr5:8762612-8763102 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 282 |
| Conread position: | 34-509 |
| Cow position: | chr5:53177611-53178094 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 262 |
| Conread position: | 34-512 |
| Cow position: | chr5:50824113-50823614 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 334 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 179, 114 |
| Conread position: | 34-512 |
| Cow position: | chr5:53941645-53942134 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 262 |
| Conread position: | 35-188 |
| Cow position: | chr5:47994083-47993930 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-205 |
| Cow position: | chr5:27382802-27382971 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 35-270 |
| Cow position: | chr5:21509331-21509569 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 35-512 |
| Cow position: | chr5:8769187-8769675 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 290 |
| Conread position: | 36-214 |
| Cow position: | chr5:35979203-35979025 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-260 |
| Cow position: | chr5:22847759-22847990 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 41 |
| Conread position: | 36-532 |
| Cow position: | chr5:54668353-54668871 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 143, 276 |
| Conread position: | 37-260 |
| Cow position: | chr5:37023829-37024051 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 37-287 |
| Cow position: | chr5:74169394-74169652 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 37-334 |
| Cow position: | chr5:35483071-35482769 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 250 |
| Conread position: | 37-488 |
| Cow position: | chr5:47865436-47864983 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 21 |
| Conread position: | 37-498 |
| Cow position: | chr5:35332480-35332034 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 156 |
| Conread position: | 37-498 |
| Cow position: | chr5:61893696-61894167 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 258 |
| Conread position: | 37-509 |
| Cow position: | chr5:15705372-15705851 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 295 |
| Conread position: | 37-509 |
| Cow position: | chr5:26827683-26828165 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 24 |
| Conread position: | 37-509 |
| Cow position: | chr5:27385278-27384797 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 37-509 |
| Cow position: | chr5:27889225-27889717 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 324 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 179, 254 |
| Conread position: | 37-509 |
| Cow position: | chr5:49869316-49868834 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 82 |
| Conread position: | 37-509 |
| Cow position: | chr5:70712786-70713266 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 81 |
| Conread position: | 37-510 |
| Cow position: | chr5:2189976-2189502 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 37-510 |
| Cow position: | chr5:64799427-64799909 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 258 |
| Conread position: | 37-512 |
| Cow position: | chr5:71133995-71133508 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 174, 48 |
| Conread position: | 37-534 |
| Cow position: | chr5:19563273-19563780 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 38-191 |
| Cow position: | chr5:31096093-31096246 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-509 |
| Cow position: | chr5:33334141-33334624 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 274 |
| Conread position: | 39-509 |
| Cow position: | chr5:47998104-47997634 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 168 |
| Conread position: | 39-509 |
| Cow position: | chr5:60097165-60096678 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 179 |
| Conread position: | 39-509 |
| Cow position: | chr5:60151307-60150827 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 138 |
| Conread position: | 43-504 |
| Cow position: | chr5:5943876-5944334 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 173, 75 |
| Conread position: | 43-509 |
| Cow position: | chr5:30234390-30233916 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 53-521 |
| Cow position: | chr5:59558397-59557922 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 69 |
| Conread position: | 64-334 |
| Cow position: | chr5:13565557-13565836 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 72-509 |
| Cow position: | chr5:67945648-67946095 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 303 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 143, 8 |
| Conread position: | 74-264 |
| Cow position: | chr5:9539827-9540021 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 91 |
| Conread position: | 86-510 |
| Cow position: | chr5:18892738-18893171 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 130, 75 |
| Conread position: | 364-507 |
| Cow position: | chr5:35482708-35482563 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 10 |
Show alignments to all cow chromosomes.