Cow genome map
| Conread name: | LyN1-MLN01D110012 |
| Conread position: | 5-498 |
| Cow position: | chr6:65680323-65679826 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 9 |
| Conread position: | 21-513 |
| Cow position: | chr6:57793689-57794190 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 10 |
| Conread position: | 27-219 |
| Cow position: | chr6:15236344-15236525 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 27-264 |
| Cow position: | chr6:22816824-22817066 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 116, 27 |
| Conread position: | 27-510 |
| Cow position: | chr6:7870689-7871183 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 269 |
| Conread position: | 28-509 |
| Cow position: | chr6:3661425-3660933 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 224 |
| Conread position: | 30-260 |
| Cow position: | chr6:2981592-2981823 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 31-513 |
| Cow position: | chr6:2597808-2597320 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 255 |
| Conread position: | 32-260 |
| Cow position: | chr6:36923098-36923332 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 33-260 |
| Cow position: | chr6:36675195-36674962 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 33-522 |
| Cow position: | chr6:52961883-52962378 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 28 |
| Conread position: | 34-498 |
| Cow position: | chr6:42768523-42768982 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 100 |
| Conread position: | 34-518 |
| Cow position: | chr6:2159343-2158854 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 186, 27 |
| Conread position: | 35-254 |
| Cow position: | chr6:5075011-5074786 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 35-498 |
| Cow position: | chr6:23904338-23904809 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 269 |
| Conread position: | 36-186 |
| Cow position: | chr6:4816954-4817102 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 36-260 |
| Cow position: | chr6:50350282-50350513 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 36-266 |
| Cow position: | chr6:67428923-67428691 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 13 |
| Conread position: | 36-490 |
| Cow position: | chr6:60865844-60866306 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 255 |
| Conread position: | 36-498 |
| Cow position: | chr6:19261212-19261686 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 13 |
| Conread position: | 36-498 |
| Cow position: | chr6:20532913-20532454 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 173 |
| Conread position: | 36-505 |
| Cow position: | chr6:23898163-23898641 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 259 |
| Conread position: | 36-509 |
| Cow position: | chr6:22875347-22875835 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 107 |
| Conread position: | 36-509 |
| Cow position: | chr6:26939886-26939401 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 89 |
| Conread position: | 36-509 |
| Cow position: | chr6:44691756-44691262 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 287 |
| Conread position: | 36-509 |
| Cow position: | chr6:48724608-48724132 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 236 |
| Conread position: | 37-264 |
| Cow position: | chr6:61409111-61409344 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 37-266 |
| Cow position: | chr6:39448763-39448986 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 178, 59 |
| Conread position: | 37-311 |
| Cow position: | chr6:26246061-26245786 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 37-311 |
| Cow position: | chr6:66256286-66256017 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 178, 68 |
| Conread position: | 37-334 |
| Cow position: | chr6:2982582-2982298 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 185 |
| Conread position: | 37-422 |
| Cow position: | chr6:15034859-15035261 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 210 |
| Conread position: | 37-498 |
| Cow position: | chr6:19041870-19042339 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 255 |
| Conread position: | 37-504 |
| Cow position: | chr6:54538596-54539078 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 176, 125 |
| Conread position: | 37-509 |
| Cow position: | chr6:104187-104670 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 295 |
| Conread position: | 37-509 |
| Cow position: | chr6:7527858-7528349 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 37-509 |
| Cow position: | chr6:23212983-23212502 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 81 |
| Conread position: | 37-509 |
| Cow position: | chr6:36924374-36923890 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 260 |
| Conread position: | 37-509 |
| Cow position: | chr6:44459917-44460399 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 253 |
| Conread position: | 37-509 |
| Cow position: | chr6:48025326-48025809 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 259 |
| Conread position: | 37-509 |
| Cow position: | chr6:49756894-49756413 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 109 |
| Conread position: | 37-509 |
| Cow position: | chr6:59689445-59688970 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 256 |
| Conread position: | 37-511 |
| Cow position: | chr6:52418918-52418433 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 255 |
| Conread position: | 39-260 |
| Cow position: | chr6:61434722-61434948 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 139, 54 |
| Conread position: | 39-509 |
| Cow position: | chr6:53430603-53431072 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 176, 120 |
| Conread position: | 45-527 |
| Cow position: | chr6:32521857-32522358 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 375 |
| Conread position: | 46-334 |
| Cow position: | chr6:4149961-4149665 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 65-260 |
| Cow position: | chr6:46533364-46533164 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 69-266 |
| Cow position: | chr6:55522521-55522318 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 91-260 |
| Cow position: | chr6:16554866-16554691 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 108-509 |
| Cow position: | chr6:49411756-49412178 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 112, 204 |
| Conread position: | 125-512 |
| Cow position: | chr6:63766711-63767101 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 362-505 |
| Cow position: | chr6:4149605-4149459 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.