Cow genome map
| Conread name: | LyN1-MLN01D110012 |
| Conread position: | 22-509 |
| Cow position: | chrX:4543328-4542846 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 193, 12 |
| Conread position: | 27-512 |
| Cow position: | chrX:835194-834697 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 299 |
| Conread position: | 29-523 |
| Cow position: | chrX:16902574-16902074 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 154 |
| Conread position: | 30-509 |
| Cow position: | chrX:28577-28100 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 177 |
| Conread position: | 31-184 |
| Cow position: | chrX:36053569-36053722 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-511 |
| Cow position: | chrX:2986-2497 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 258 |
| Conread position: | 32-513 |
| Cow position: | chrX:27980738-27981230 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 293 |
| Conread position: | 33-512 |
| Cow position: | chrX:32753611-32753122 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 223 |
| Conread position: | 34-455 |
| Cow position: | chrX:29531429-29531005 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 34-509 |
| Cow position: | chrX:32647509-32647023 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 298 |
| Conread position: | 34-512 |
| Cow position: | chrX:23430279-23430770 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 261 |
| Conread position: | 34-513 |
| Cow position: | chrX:40-528 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 167 |
| Conread position: | 34-515 |
| Cow position: | chrX:44615640-44616132 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 257 |
| Conread position: | 35-272 |
| Cow position: | chrX:29428701-29428935 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 182, 80 |
| Conread position: | 35-498 |
| Cow position: | chrX:823939-823457 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 259 |
| Conread position: | 35-509 |
| Cow position: | chrX:833235-832750 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 285 |
| Conread position: | 35-509 |
| Cow position: | chrX:44682168-44681695 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 286 |
| Conread position: | 36-219 |
| Cow position: | chrX:46750923-46750740 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 36-260 |
| Cow position: | chrX:38748956-38749185 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 215 |
| Conread position: | 36-334 |
| Cow position: | chrX:9099900-9099617 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 32, 82 |
| Conread position: | 36-334 |
| Cow position: | chrX:32754456-32754153 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 284 |
| Conread position: | 37-184 |
| Cow position: | chrX:29126618-29126765 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-216 |
| Cow position: | chrX:47120995-47121176 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 37-260 |
| Cow position: | chrX:9313412-9313192 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 117 |
| Conread position: | 37-260 |
| Cow position: | chrX:10749366-10749137 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 37-264 |
| Cow position: | chrX:18434899-18434673 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 37-264 |
| Cow position: | chrX:48236459-48236223 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 37-265 |
| Cow position: | chrX:43358003-43357777 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 180, 44 |
| Conread position: | 37-334 |
| Cow position: | chrX:15764641-15764356 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 37-334 |
| Cow position: | chrX:28868442-28868726 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 37-490 |
| Cow position: | chrX:28874526-28874065 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 254 |
| Conread position: | 37-498 |
| Cow position: | chrX:39827516-39827984 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 215 |
| Conread position: | 37-504 |
| Cow position: | chrX:35933810-35933336 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 311 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 124, 278 |
| Conread position: | 37-509 |
| Cow position: | chrX:25272409-25272894 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 255 |
| Conread position: | 37-509 |
| Cow position: | chrX:34443237-34442757 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 37-510 |
| Cow position: | chrX:16795655-16795167 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 163 |
| Conread position: | 37-510 |
| Cow position: | chrX:25266272-25266752 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 78 |
| Conread position: | 37-510 |
| Cow position: | chrX:42402757-42403242 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 39-332 |
| Cow position: | chrX:45419802-45420084 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 122, 184 |
| Conread position: | 40-484 |
| Cow position: | chrX:9108534-9108084 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 48-509 |
| Cow position: | chrX:16891332-16891805 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 310 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 174, 43 |
| Conread position: | 49-264 |
| Cow position: | chrX:44657167-44657370 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 49-328 |
| Cow position: | chrX:25221032-25220748 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 66 |
| Conread position: | 52-314 |
| Cow position: | chrX:8448311-8448050 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 105, 115 |
| Conread position: | 75-511 |
| Cow position: | chrX:4849-5302 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 90-260 |
| Cow position: | chrX:25951346-25951170 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 362-511 |
| Cow position: | chrX:32754090-32753946 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 30 |
Show alignments to all cow chromosomes.