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Cow genome map

           
Conread name:
           
LyN1-MLN01D120052
        

               
Conread position:
               
318-596
               

               
Cow position:
               
chr6:24961923-24962200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
325-544
               

               
Cow position:
               
chr6:50445975-50445753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
327-584
               

               
Cow position:
               
chr6:642791-642521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 214
               

               
Conread position:
               
328-599
               

               
Cow position:
               
chr6:57164218-57164489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
331-540
               

               
Cow position:
               
chr6:32210835-32210626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
331-582
               

               
Cow position:
               
chr6:5095759-5095502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
331-584
               

               
Cow position:
               
chr6:48344119-48344378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
331-593
               

               
Cow position:
               
chr6:57405333-57405071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
331-599
               

               
Cow position:
               
chr6:7190328-7190059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
331-599
               

               
Cow position:
               
chr6:9322950-9323209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
331-599
               

               
Cow position:
               
chr6:17997524-17997259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 181
               

               
Conread position:
               
331-601
               

               
Cow position:
               
chr6:54365532-54365266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
332-553
               

               
Cow position:
               
chr6:28080105-28079881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
333-574
               

               
Cow position:
               
chr6:56849811-56850052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
345-602
               

               
Cow position:
               
chr6:1499444-1499706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
349-518
               

               
Cow position:
               
chr6:50119978-50119806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr6:48573074-48572878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
349-579
               

               
Cow position:
               
chr6:4864731-4864507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
349-583
               

               
Cow position:
               
chr6:66131117-66131351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
349-584
               

               
Cow position:
               
chr6:14839218-14838980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
349-592
               

               
Cow position:
               
chr6:63720008-63720253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
349-595
               

               
Cow position:
               
chr6:26728718-26728476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 173
               

               
Conread position:
               
349-596
               

               
Cow position:
               
chr6:16191476-16191735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
349-596
               

               
Cow position:
               
chr6:37634598-37634846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
349-597
               

               
Cow position:
               
chr6:51674727-51674968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
349-599
               

               
Cow position:
               
chr6:16700068-16700321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 197
               

               
Conread position:
               
351-544
               

               
Cow position:
               
chr6:15923188-15922992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
361-545
               

               
Cow position:
               
chr6:53453591-53453780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
365-602
               

               
Cow position:
               
chr6:60783696-60783933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
122, 65
               

               
Conread position:
               
366-509
               

               
Cow position:
               
chr6:46666931-46667083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
366-525
               

               
Cow position:
               
chr6:7989589-7989421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
366-594
               

               
Cow position:
               
chr6:58173010-58173240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
366-601
               

               
Cow position:
               
chr6:49410862-49410635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 42
               

               
Conread position:
               
367-519
               

               
Cow position:
               
chr6:388999-389151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
367-519
               

               
Cow position:
               
chr6:1703642-1703799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
367-519
               

               
Cow position:
               
chr6:21110798-21110946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
367-519
               

               
Cow position:
               
chr6:21311930-21311767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
367-535
               

               
Cow position:
               
chr6:59015733-59015561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
367-545
               

               
Cow position:
               
chr6:10332268-10332083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 86
               

               
Conread position:
               
367-552
               

               
Cow position:
               
chr6:30786320-30786140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
367-552
               

               
Cow position:
               
chr6:49398788-49398600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
367-552
               

               
Cow position:
               
chr6:63047404-63047593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
367-553
               

               
Cow position:
               
chr6:7824589-7824778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
367-553
               

               
Cow position:
               
chr6:38441010-38441193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 88
               

               
Conread position:
               
367-553
               

               
Cow position:
               
chr6:54807051-54807243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 169
               

               
Conread position:
               
367-554
               

               
Cow position:
               
chr6:55688864-55689057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
367-556
               

               
Cow position:
               
chr6:38895246-38895063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
367-557
               

               
Cow position:
               
chr6:27870602-27870797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
367-557
               

               
Cow position:
               
chr6:33276867-33277064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
367-559
               

               
Cow position:
               
chr6:15938024-15937831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
367-559
               

               
Cow position:
               
chr6:48567514-48567326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
367-562
               

               
Cow position:
               
chr6:48425493-48425295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
367-568
               

               
Cow position:
               
chr6:60859478-60859268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
367-568
               

               
Cow position:
               
chr6:61515370-61515160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr6:3978839-3978626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 179
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr6:8562544-8562758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 200
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:1886835-1886629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:9838990-9839209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:16746168-16746379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:20157152-20157370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:48187753-48187546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:48807167-48806956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr6:53178465-53178674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 147
               

               
Conread position:
               
367-578
               

               
Cow position:
               
chr6:16737848-16738058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 107
               

               
Conread position:
               
367-578
               

               
Cow position:
               
chr6:51835228-51835439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
367-579
               

               
Cow position:
               
chr6:54867339-54867557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
367-582
               

               
Cow position:
               
chr6:2582702-2582917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
63, 114
               

               
Conread position:
               
367-584
               

               
Cow position:
               
chr6:8788209-8787992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
104, 161
               

               
Conread position:
               
367-584
               

               
Cow position:
               
chr6:20230998-20230781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
367-588
               

               
Cow position:
               
chr6:10254067-10254290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
367-592
               

               
Cow position:
               
chr6:5609612-5609392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 123
               

               
Conread position:
               
367-592
               

               
Cow position:
               
chr6:25773553-25773332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
367-592
               

               
Cow position:
               
chr6:28148079-28148307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
367-592
               

               
Cow position:
               
chr6:36196042-36196263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
63, 135
               

               
Conread position:
               
367-592
               

               
Cow position:
               
chr6:49604511-49604729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
367-593
               

               
Cow position:
               
chr6:15300989-15300775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
367-593
               

               
Cow position:
               
chr6:35613586-35613368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 114
               

               
Conread position:
               
367-593
               

               
Cow position:
               
chr6:52248307-52248078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
54, 189
               

               
Conread position:
               
367-594
               

               
Cow position:
               
chr6:31635860-31635633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
367-594
               

               
Cow position:
               
chr6:49685413-49685640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
367-595
               

               
Cow position:
               
chr6:35415694-35415459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 6
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:130337-130104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 143
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:6400776-6401011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
46, 85
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:10106168-10105922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:19427277-19427512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 222
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:23695825-23696057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:24031203-24031436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 141
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:36652247-36652479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:53460744-53460510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:56376522-56376291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:61269158-61269369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
188, 32
               

               
Conread position:
               
367-596
               

               
Cow position:
               
chr6:63197343-63197106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:4383320-4383539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:10176475-10176242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 179
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:15242662-15242896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:15305410-15305631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:17414623-17414387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:23248135-23247902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:28318237-28318460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
228, 60
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:28977201-28976980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
180, 58
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:29210329-29210553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:31535743-31535509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:32121739-32121967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
63, 145
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:38207668-38207430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 166
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:38218500-38218728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:44098912-44099147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 192
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:44372115-44371885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
189, 126
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:47799126-47799353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:52478599-52478351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
367-599
               

               
Cow position:
               
chr6:58732486-58732243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
367-600
               

               
Cow position:
               
chr6:36202656-36202882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
63, 123
               

               
Conread position:
               
367-601
               

               
Cow position:
               
chr6:6460367-6460604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 182
               

               
Conread position:
               
367-601
               

               
Cow position:
               
chr6:13687983-13687750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 54
               

               
Conread position:
               
367-601
               

               
Cow position:
               
chr6:20098136-20097897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
367-601
               

               
Cow position:
               
chr6:29484918-29485144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
63, 133
               

               
Conread position:
               
367-601
               

               
Cow position:
               
chr6:47339520-47339294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
367-602
               

               
Cow position:
               
chr6:47574733-47574969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 179
               

               
Conread position:
               
367-612
               

               
Cow position:
               
chr6:47540354-47540604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
368-596
               

               
Cow position:
               
chr6:8637104-8637335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
368-596
               

               
Cow position:
               
chr6:24223331-24223097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 203
               

               
Conread position:
               
368-599
               

               
Cow position:
               
chr6:21869816-21869589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
172, 53
               

               
Conread position:
               
368-601
               

               
Cow position:
               
chr6:51581428-51581190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
368-602
               

               
Cow position:
               
chr6:46860339-46860104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
369-537
               

               
Cow position:
               
chr6:2012849-2013018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
369-548
               

               
Cow position:
               
chr6:28477012-28477190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
369-567
               

               
Cow position:
               
chr6:28811164-28810966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
369-576
               

               
Cow position:
               
chr6:3929149-3929356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 46
               

               
Conread position:
               
369-591
               

               
Cow position:
               
chr6:13592540-13592761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
369-592
               

               
Cow position:
               
chr6:5114217-5113996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
369-593
               

               
Cow position:
               
chr6:24781734-24781501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
44, 180
               

               
Conread position:
               
369-595
               

               
Cow position:
               
chr6:53651871-53652096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 124
               

               
Conread position:
               
369-596
               

               
Cow position:
               
chr6:28084185-28083958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
369-596
               

               
Cow position:
               
chr6:61137201-61137432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
54, 101
               

               
Conread position:
               
369-599
               

               
Cow position:
               
chr6:38641328-38641557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 65
               

               
Conread position:
               
369-599
               

               
Cow position:
               
chr6:46465658-46465881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
369-599
               

               
Cow position:
               
chr6:54991172-54990941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
369-601
               

               
Cow position:
               
chr6:8125162-8125388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 56
               

               
Conread position:
               
369-601
               

               
Cow position:
               
chr6:35842487-35842720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
371-576
               

               
Cow position:
               
chr6:11169535-11169737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
371-593
               

               
Cow position:
               
chr6:60931068-60930844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
371-599
               

               
Cow position:
               
chr6:47640605-47640372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
372-576
               

               
Cow position:
               
chr6:58364179-58363971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
372-579
               

               
Cow position:
               
chr6:11246597-11246806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
372-582
               

               
Cow position:
               
chr6:58076057-58076273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
372-596
               

               
Cow position:
               
chr6:12629857-12630078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
372-599
               

               
Cow position:
               
chr6:5302571-5302359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
140, 47
               

               
Conread position:
               
372-599
               

               
Cow position:
               
chr6:16411028-16411251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
372-599
               

               
Cow position:
               
chr6:21542153-21542383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
373-574
               

               
Cow position:
               
chr6:49002891-49002697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
373-576
               

               
Cow position:
               
chr6:36928485-36928698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
373-579
               

               
Cow position:
               
chr6:34196314-34196111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
373-597
               

               
Cow position:
               
chr6:415928-416164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
373-601
               

               
Cow position:
               
chr6:52412688-52412921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 179
               

               
Conread position:
               
374-593
               

               
Cow position:
               
chr6:35993412-35993638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
46, 151
               

               
Conread position:
               
374-595
               

               
Cow position:
               
chr6:38614659-38614875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
374-599
               

               
Cow position:
               
chr6:40834638-40834408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 148
               

               
Conread position:
               
374-599
               

               
Cow position:
               
chr6:55282455-55282234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
374-601
               

               
Cow position:
               
chr6:12092149-12091931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
375-596
               

               
Cow position:
               
chr6:899454-899236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 160
               

               
Conread position:
               
375-599
               

               
Cow position:
               
chr6:44984162-44984390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 184
               

               
Conread position:
               
376-592
               

               
Cow position:
               
chr6:15243088-15243308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
376-593
               

               
Cow position:
               
chr6:59108779-59108999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
377-578
               

               
Cow position:
               
chr6:35276305-35276506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 155
               

               
Conread position:
               
377-599
               

               
Cow position:
               
chr6:12543095-12542870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
377-599
               

               
Cow position:
               
chr6:18961685-18961455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
377-599
               

               
Cow position:
               
chr6:65870862-65871097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
378-534
               

               
Cow position:
               
chr6:50020369-50020533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
379-584
               

               
Cow position:
               
chr6:6965543-6965352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
379-595
               

               
Cow position:
               
chr6:16423539-16423758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
379-599
               

               
Cow position:
               
chr6:120079-120307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
380-595
               

               
Cow position:
               
chr6:48112045-48112253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
380-601
               

               
Cow position:
               
chr6:1770358-1770136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 106
               

               
Conread position:
               
382-596
               

               
Cow position:
               
chr6:7128558-7128346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
6, 56
               

               
Conread position:
               
383-551
               

               
Cow position:
               
chr6:50984068-50984238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
384-601
               

               
Cow position:
               
chr6:61608352-61608574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
387-599
               

               
Cow position:
               
chr6:4692136-4691915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
387-599
               

               
Cow position:
               
chr6:19292660-19292861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
390-533
               

               
Cow position:
               
chr6:22254136-22253989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
392-596
               

               
Cow position:
               
chr6:57571326-57571536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
393-601
               

               
Cow position:
               
chr6:16316160-16316375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
399-599
               

               
Cow position:
               
chr6:582407-582212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
401-595
               

               
Cow position:
               
chr6:37376654-37376458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
401-596
               

               
Cow position:
               
chr6:48803779-48803576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
403-518
               

               
Cow position:
               
chr6:62017396-62017513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
403-535
               

               
Cow position:
               
chr6:65852679-65852549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
403-593
               

               
Cow position:
               
chr6:60118010-60118204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 155
               

               
Conread position:
               
403-599
               

               
Cow position:
               
chr6:38640096-38640293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 5
               

               
Conread position:
               
408-599
               

               
Cow position:
               
chr6:12829353-12829165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
408-599
               

               
Cow position:
               
chr6:58597635-58597446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
409-591
               

               
Cow position:
               
chr6:25615230-25615043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 18
               

               
Conread position:
               
410-599
               

               
Cow position:
               
chr6:66531946-66531761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
411-591
               

               
Cow position:
               
chr6:32287512-32287691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
412-552
               

               
Cow position:
               
chr6:377006-377143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
412-579
               

               
Cow position:
               
chr6:66874224-66874392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
412-601
               

               
Cow position:
               
chr6:50975931-50976110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
413-576
               

               
Cow position:
               
chr6:16266597-16266761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
413-599
               

               
Cow position:
               
chr6:38233834-38234019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
416-596
               

               
Cow position:
               
chr6:21234921-21235099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
417-599
               

               
Cow position:
               
chr6:10225761-10225587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
422-601
               

               
Cow position:
               
chr6:11192583-11192402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
429-599
               

               
Cow position:
               
chr6:66375441-66375273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
433-599
               

               
Cow position:
               
chr6:59718691-59718857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
105, 131
               

               
Conread position:
               
436-597
               

               
Cow position:
               
chr6:60274108-60273953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
436-599
               

               
Cow position:
               
chr6:58370651-58370818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
448-594
               

               
Cow position:
               
chr6:60673479-60673623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
449-601
               

               
Cow position:
               
chr6:37332018-37332170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 68
               

               
Conread position:
               
457-599
               

               
Cow position:
               
chr6:63169083-63168935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
459-599
               

               
Cow position:
               
chr6:23466108-23465973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
461-599
               

               
Cow position:
               
chr6:22985935-22985795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 112
               

               
Conread position:
               
470-593
               

               
Cow position:
               
chr6:36493617-36493492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
470-599
               

               
Cow position:
               
chr6:9302784-9302657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
471-601
               

               
Cow position:
               
chr6:7170414-7170290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
473-600
               

               
Cow position:
               
chr6:67615496-67615369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
474-599
               

               
Cow position:
               
chr6:60468173-60468298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 81
               
Show alignments to all cow chromosomes.