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Cow genome map

           
Conread name:
           
LyN1-MLN01E020019
        

               
Conread position:
               
1-127
               

               
Cow position:
               
chr11:43736920-43737049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr11:32586939-32587077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
1-145
               

               
Cow position:
               
chr11:4602337-4602193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr11:23278776-23278950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
64, 33
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr11:25721818-25721980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr11:42206603-42206436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr11:69676168-69676341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr11:74839790-74839620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr11:70600639-70600827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr11:80007875-80008068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr11:48315212-48315414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr11:47784967-47784752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr11:45350322-45350537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr11:17638331-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr11:55053050-55052842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr11:3896511-3896730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr11:63866474-63866694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr11:72884426-72884634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 27
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr11:18915197-18914984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr11:35669779-35669997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
207, 33
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr11:30964530-30964298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 135
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr11:25119750-25119980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr11:47725076-47724842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr11:48086105-48085807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr11:261070-261388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr11:49872700-49873017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 171
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr11:42067051-42066721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 212
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr11:63998903-63999234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 199
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr11:35212983-35213316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr11:48296212-48295867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr11:75874585-75874917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr11:7458092-7458474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 123
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr11:66572305-66572688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
29, 187
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr11:15339243-15338885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr11:258987-259367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr11:19591808-19592184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr11:35347563-35347944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr11:34646782-34646389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 231
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr11:1380866-1380464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 239
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:2084334-2083914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 215
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:15504298-15503867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:30192364-30191936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:30764681-30764246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 211
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:40792506-40792927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 244
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:52380685-52381104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 208
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:53778807-53778379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 161
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:62490608-62490200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 33
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:62663059-62663466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:66041460-66041040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:68909665-68910081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:70483664-70484095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:80819838-80820232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
209, 29
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr11:13061067-13061475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr11:37042160-37041986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr11:63498945-63499131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr11:12555118-12555312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr11:15382309-15382553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-442
               

               
Cow position:
               
chr11:13500197-13499763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr11:4621251-4621420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr11:30857220-30857047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr11:41215918-41215710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr11:30894818-30895040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr11:21886015-21885792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr11:33409082-33409303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
204, 6
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr11:80639367-80639591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr11:48660114-48659793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr11:67615067-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr11:23407645-23407315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr11:5201461-5201805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
3-388
               

               
Cow position:
               
chr11:2874587-2874199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr11:38236430-38236010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr11:45646413-45646827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr11:75479838-75480260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
3-455
               

               
Cow position:
               
chr11:62620561-62620122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 226
               

               
Conread position:
               
4-145
               

               
Cow position:
               
chr11:12768580-12768439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chr11:63484124-63483961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr11:53651824-53651653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr11:30986820-30986630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr11:20205674-20205874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr11:62812768-62813036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr11:62789311-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr11:70251098-70250774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
136, 81
               

               
Conread position:
               
4-416
               

               
Cow position:
               
chr11:19500620-19501001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
4-421
               

               
Cow position:
               
chr11:27248673-27248263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
4-426
               

               
Cow position:
               
chr11:39115657-39115260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
4-442
               

               
Cow position:
               
chr11:44032190-44031748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 66
               

               
Conread position:
               
5-139
               

               
Cow position:
               
chr11:6784388-6784255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-139
               

               
Cow position:
               
chr11:63977238-63977104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-139
               

               
Cow position:
               
chr11:65431700-65431565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
5-144
               

               
Cow position:
               
chr11:62655874-62655735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
5-162
               

               
Cow position:
               
chr11:81928329-81928484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chr11:15591297-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
5-173
               

               
Cow position:
               
chr11:64335013-64334847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr11:19891019-19890833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr11:60296921-60296721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr11:49396343-49396537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr11:46784647-46784462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
5, 69
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr11:63478545-63478361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr11:85186345-85186547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr11:30842842-30843041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr11:46427224-46427430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr11:63165468-63165669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr11:71022183-71021978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr11:56115120-56114915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr11:71492680-71492890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
6, 148
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr11:3175851-3175635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
165, 29
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr11:69978148-69977932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
202, 29
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr11:897847-897632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
203, 29
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr11:1932305-1932533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr11:17321850-17321606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr11:64105176-64104958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr11:18447318-18447545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:17889544-17889786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:31228136-31227903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
200, 28
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr11:30172482-30172246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
5-295
               

               
Cow position:
               
chr11:17676192-17676467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
5-301
               

               
Cow position:
               
chr11:46922704-46922999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr11:81167848-81168157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr11:83032860-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr11:67614742-67615061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr11:70756657-70756348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-358
               

               
Cow position:
               
chr11:11647280-11646910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
25, 178
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr11:33286772-33287114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr11:80556401-80556055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr11:67600961-67600609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr11:30830440-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 27
               

               
Conread position:
               
5-380
               

               
Cow position:
               
chr11:9270555-9270909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
205, 35
               

               
Conread position:
               
5-383
               

               
Cow position:
               
chr11:80923143-80923508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:13592922-13592547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
25, 211
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:26535967-26535589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:27404888-27405255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:35580444-35580067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:36286887-36286512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:47638841-47639217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 152
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:74316889-74316524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr11:65762402-65762814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 217
               

               
Conread position:
               
5-413
               

               
Cow position:
               
chr11:41985865-41986264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-415
               

               
Cow position:
               
chr11:41353-40958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr11:29960475-29960078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr11:66188138-66188547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 83
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr11:20238860-20238445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr11:44223064-44222670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr11:53773866-53773442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr11:83398090-83397674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 202
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:1625039-1625448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:6233695-6234112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 209
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:15017241-15016812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 206
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:15632377-15632793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 139
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:17859970-17860387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:20762035-20761611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:23251416-23251837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:25620206-25620629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
6, 152
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:26117556-26117950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
330, 27
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:35153637-35154061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:36182874-36182455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:49153123-49152720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:50152630-50153052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 224
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:55334102-55333675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
25, 221
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:55744652-55744240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 121
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:61454320-61454768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 184
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:65157222-65157641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 218
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr11:83043184-83043594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
5-437
               

               
Cow position:
               
chr11:58102574-58103021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr11:18699053-18698623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr11:30721283-30720846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 196
               

               
Conread position:
               
5-448
               

               
Cow position:
               
chr11:27747101-27746667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr11:39250146-39249950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr11:24602141-24601908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
6-387
               

               
Cow position:
               
chr11:4207493-4207124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
6-387
               

               
Cow position:
               
chr11:49210635-49211005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
6-426
               

               
Cow position:
               
chr11:15285442-15285851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
7-388
               

               
Cow position:
               
chr11:71456011-71455601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 283
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chr11:30209643-30209992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 111
               

               
Conread position:
               
9-145
               

               
Cow position:
               
chr11:70821223-70821085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
9-170
               

               
Cow position:
               
chr11:63201435-63201269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
9-173
               

               
Cow position:
               
chr11:33369331-33369163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr11:66104214-66104387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
9-189
               

               
Cow position:
               
chr11:2484617-2484798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 149
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chr11:38211820-38211623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chr11:78820328-78820129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr11:62742469-62742668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
9-215
               

               
Cow position:
               
chr11:8437511-8437724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
9-215
               

               
Cow position:
               
chr11:41313483-41313687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr11:11533756-11533965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr11:4199453-4199233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 149
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr11:30867356-30867142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr11:8670196-8669963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr11:17721622-17721888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 221
               

               
Conread position:
               
9-297
               

               
Cow position:
               
chr11:42159883-42160159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
198, 78
               

               
Conread position:
               
9-301
               

               
Cow position:
               
chr11:80412830-80413114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:375638-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
9-337
               

               
Cow position:
               
chr11:70206494-70206184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
9-356
               

               
Cow position:
               
chr11:51729453-51729131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
9-359
               

               
Cow position:
               
chr11:45435254-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
9-364
               

               
Cow position:
               
chr11:81134990-81135327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
9-387
               

               
Cow position:
               
chr11:37804373-37804743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
9-388
               

               
Cow position:
               
chr11:30638773-30639135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
9-388
               

               
Cow position:
               
chr11:72375487-72375875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 234
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr11:46746815-46746413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
9-423
               

               
Cow position:
               
chr11:21728110-21728498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:11125844-11125430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:21843960-21844369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:40818454-40818872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:49149225-49148815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:52297044-52297457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:62239920-62239516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr11:77758582-77758994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
9-440
               

               
Cow position:
               
chr11:33348020-33348431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 25
               

               
Conread position:
               
9-440
               

               
Cow position:
               
chr11:46747680-46748116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
21, 205
               

               
Conread position:
               
10-142
               

               
Cow position:
               
chr11:25209563-25209439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
10-145
               

               
Cow position:
               
chr11:64096489-64096625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
10-170
               

               
Cow position:
               
chr11:53486982-53487138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr11:6255831-6256014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
10-293
               

               
Cow position:
               
chr11:80564475-80564198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
10-331
               

               
Cow position:
               
chr11:40608415-40608730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr11:71390396-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
10-388
               

               
Cow position:
               
chr11:63433888-63434245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
10-388
               

               
Cow position:
               
chr11:65607513-65607880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chr11:11558346-11557952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
11-145
               

               
Cow position:
               
chr11:85985872-85986009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr11:29786316-29786529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr11:47837496-47837290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
11-327
               

               
Cow position:
               
chr11:17036355-17036658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
11-395
               

               
Cow position:
               
chr11:14470538-14470173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr11:39462796-39462395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr11:43360610-43361027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
11-426
               

               
Cow position:
               
chr11:17227474-17227873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
13-171
               

               
Cow position:
               
chr11:54872586-54872745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
13-174
               

               
Cow position:
               
chr11:80296684-80296841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
13-388
               

               
Cow position:
               
chr11:2907359-2907708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 21
               

               
Conread position:
               
13-426
               

               
Cow position:
               
chr11:77705925-77705532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
13-442
               

               
Cow position:
               
chr11:13042973-13043393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
14-174
               

               
Cow position:
               
chr11:15278844-15279001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
15-206
               

               
Cow position:
               
chr11:49207884-49207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr11:18852075-18851870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
18-387
               

               
Cow position:
               
chr11:63202079-63202425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
55, 136
               

               
Conread position:
               
20-227
               

               
Cow position:
               
chr11:85271577-85271779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
20-236
               

               
Cow position:
               
chr11:37435822-37436038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
20-354
               

               
Cow position:
               
chr11:63435690-63435362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 157
               

               
Conread position:
               
20-388
               

               
Cow position:
               
chr11:34144751-34145103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
20-390
               

               
Cow position:
               
chr11:42296459-42296807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr11:48474877-48474475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 210
               

               
Conread position:
               
21-426
               

               
Cow position:
               
chr11:34113429-34113041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
21-426
               

               
Cow position:
               
chr11:34121362-34120964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
24-247
               

               
Cow position:
               
chr11:48248048-48248277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
25-426
               

               
Cow position:
               
chr11:3393053-3393444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
25-426
               

               
Cow position:
               
chr11:83066653-83066262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 163
               

               
Conread position:
               
27-340
               

               
Cow position:
               
chr11:48429277-48428964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
102, 178
               

               
Conread position:
               
27-426
               

               
Cow position:
               
chr11:13191395-13190986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
28-167
               

               
Cow position:
               
chr11:62081814-62081949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
28-190
               

               
Cow position:
               
chr11:60720296-60720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
28-192
               

               
Cow position:
               
chr11:18508871-18509037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
28-194
               

               
Cow position:
               
chr11:22884564-22884405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
113, 56
               

               
Conread position:
               
28-195
               

               
Cow position:
               
chr11:86689286-86689118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
28-211
               

               
Cow position:
               
chr11:46884533-46884348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
28-224
               

               
Cow position:
               
chr11:4225246-4225058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
180, 57
               

               
Conread position:
               
28-281
               

               
Cow position:
               
chr11:58927731-58927481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr11:18910726-18910964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
28-313
               

               
Cow position:
               
chr11:39060447-39060715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
28-338
               

               
Cow position:
               
chr11:47772224-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
38, 206
               

               
Conread position:
               
28-356
               

               
Cow position:
               
chr11:28993590-28993889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
28-360
               

               
Cow position:
               
chr11:8544858-8545174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
28-380
               

               
Cow position:
               
chr11:38670848-38670501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
50, 161
               

               
Conread position:
               
28-388
               

               
Cow position:
               
chr11:9463995-9463642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
28-388
               

               
Cow position:
               
chr11:20684412-20684766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
28-421
               

               
Cow position:
               
chr11:9221564-9221954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
28-422
               

               
Cow position:
               
chr11:2788553-2788150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
50, 223
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:3780257-3780658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:4323520-4323133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:45872152-45872552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:48544594-48544209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:67931333-67931728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:70459715-70459341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:77745091-77745484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 204
               

               
Conread position:
               
29-167
               

               
Cow position:
               
chr11:7617051-7617188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 40
               

               
Conread position:
               
29-426
               

               
Cow position:
               
chr11:17083157-17083531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
31-174
               

               
Cow position:
               
chr11:36104470-36104324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
32-172
               

               
Cow position:
               
chr11:78672825-78672684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
32-208
               

               
Cow position:
               
chr11:10992416-10992243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
32-209
               

               
Cow position:
               
chr11:34467716-34467547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
32-236
               

               
Cow position:
               
chr11:8683924-8684132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
32-356
               

               
Cow position:
               
chr11:17493637-17493321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
32-422
               

               
Cow position:
               
chr11:2917439-2917809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr11:29916696-29916304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr11:39499509-39499143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr11:77319566-77319190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 53
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr11:81162293-81162665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
345, 51
               

               
Conread position:
               
33-186
               

               
Cow position:
               
chr11:34136394-34136240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
33-204
               

               
Cow position:
               
chr11:905241-905401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
33-208
               

               
Cow position:
               
chr11:35109384-35109560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
33-217
               

               
Cow position:
               
chr11:11469500-11469679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
33-275
               

               
Cow position:
               
chr11:4637022-4637250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
172, 52
               

               
Conread position:
               
33-308
               

               
Cow position:
               
chr11:30494144-30493889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
33-339
               

               
Cow position:
               
chr11:24599242-24599529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
174, 21
               

               
Conread position:
               
33-426
               

               
Cow position:
               
chr11:57724670-57725062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
34-176
               

               
Cow position:
               
chr11:4411721-4411859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
34-278
               

               
Cow position:
               
chr11:31410728-31410963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
171, 51
               

               
Conread position:
               
34-334
               

               
Cow position:
               
chr11:80537624-80537351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
34-426
               

               
Cow position:
               
chr11:8524966-8525347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 42
               

               
Conread position:
               
34-426
               

               
Cow position:
               
chr11:26143942-26144318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
35-354
               

               
Cow position:
               
chr11:56187758-56187464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
35-426
               

               
Cow position:
               
chr11:8988085-8988463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
175, 36
               

               
Conread position:
               
35-444
               

               
Cow position:
               
chr11:68206695-68207091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
37-196
               

               
Cow position:
               
chr11:37425005-37425158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
37-233
               

               
Cow position:
               
chr11:2925159-2925344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
171, 13
               

               
Conread position:
               
37-426
               

               
Cow position:
               
chr11:22977728-22978093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
348, 48
               

               
Conread position:
               
38-423
               

               
Cow position:
               
chr11:71868455-71868834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
41-426
               

               
Cow position:
               
chr11:67804890-67804515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
41-426
               

               
Cow position:
               
chr11:82940481-82940851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
44-426
               

               
Cow position:
               
chr11:18706687-18707047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
166, 46
               

               
Conread position:
               
50-445
               

               
Cow position:
               
chr11:44642152-44642541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
51-426
               

               
Cow position:
               
chr11:46580492-46580133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
52-423
               

               
Cow position:
               
chr11:32436472-32436098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
52-426
               

               
Cow position:
               
chr11:33414372-33414000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
54-426
               

               
Cow position:
               
chr11:6835667-6835295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
62-426
               

               
Cow position:
               
chr11:69119418-69119066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 163
               

               
Conread position:
               
62-442
               

               
Cow position:
               
chr11:34963193-34962810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 102
               

               
Conread position:
               
63-196
               

               
Cow position:
               
chr11:11523334-11523468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
63-442
               

               
Cow position:
               
chr11:77750646-77751019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
65-232
               

               
Cow position:
               
chr11:82730877-82731045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
65-426
               

               
Cow position:
               
chr11:1070972-1071325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 20
               

               
Conread position:
               
65-426
               

               
Cow position:
               
chr11:1849052-1849399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
66-215
               

               
Cow position:
               
chr11:56290631-56290481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
66-226
               

               
Cow position:
               
chr11:19606698-19606536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
66-348
               

               
Cow position:
               
chr11:6633830-6633562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
66-377
               

               
Cow position:
               
chr11:30955120-30954820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 86
               

               
Conread position:
               
66-386
               

               
Cow position:
               
chr11:61958627-61958934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
66-423
               

               
Cow position:
               
chr11:33753790-33754130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:20602346-20602006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:34032079-34032431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:43430334-43430680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:48272320-48271961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 158
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:53147413-53147774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:54334448-54334101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 86
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:56518193-56518546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
143, 20
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:59702609-59702250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:62150774-62151115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
292, 98
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr11:73924441-73924792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
66-441
               

               
Cow position:
               
chr11:5789780-5790163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
143, 195
               

               
Conread position:
               
66-442
               

               
Cow position:
               
chr11:63847964-63847598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
144, 36
               

               
Conread position:
               
67-305
               

               
Cow position:
               
chr11:18587475-18587714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
68-328
               

               
Cow position:
               
chr11:41293700-41293948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
140, 157
               

               
Conread position:
               
68-426
               

               
Cow position:
               
chr11:29946797-29947160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 19
               

               
Conread position:
               
69-351
               

               
Cow position:
               
chr11:69076027-69075756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 118
               

               
Conread position:
               
69-423
               

               
Cow position:
               
chr11:83230284-83230618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
141, 121
               

               
Conread position:
               
69-426
               

               
Cow position:
               
chr11:21894044-21894387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
70-426
               

               
Cow position:
               
chr11:23232404-23232747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
70-426
               

               
Cow position:
               
chr11:67747395-67747048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
71-387
               

               
Cow position:
               
chr11:66424765-66425077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
252, 55
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr11:25387182-25386837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr11:58990606-58990277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
265, 25
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr11:70609913-70609554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr11:70836264-70836601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr11:80530471-80530137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
268, 17
               

               
Conread position:
               
71-442
               

               
Cow position:
               
chr11:77128775-77128417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
139, 154
               

               
Conread position:
               
72-169
               

               
Cow position:
               
chr11:45437392-45437295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-214
               

               
Cow position:
               
chr11:79018945-79019088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr11:26845481-26845760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
72-426
               

               
Cow position:
               
chr11:377529-377882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 18
               

               
Conread position:
               
72-426
               

               
Cow position:
               
chr11:62155752-62155393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 162
               

               
Conread position:
               
72-426
               

               
Cow position:
               
chr11:63482317-63482659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
72-442
               

               
Cow position:
               
chr11:44234469-44234106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 157
               

               
Conread position:
               
73-223
               

               
Cow position:
               
chr11:62376361-62376511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
135, 78
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr11:35803251-35803016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
73-361
               

               
Cow position:
               
chr11:2575791-2576066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
136, 152
               

               
Conread position:
               
74-344
               

               
Cow position:
               
chr11:7460502-7460763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
74-378
               

               
Cow position:
               
chr11:47004457-47004171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
135, 49
               

               
Conread position:
               
74-379
               

               
Cow position:
               
chr11:70086444-70086144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 76
               

               
Conread position:
               
74-388
               

               
Cow position:
               
chr11:23586750-23586448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 151
               

               
Conread position:
               
74-400
               

               
Cow position:
               
chr11:59873039-59872731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr11:952378-952035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr11:28644199-28643848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 155
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr11:30925266-30924919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr11:61137063-61137431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr11:62226103-62225766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 130
               

               
Conread position:
               
75-423
               

               
Cow position:
               
chr11:23137944-23138292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
75-426
               

               
Cow position:
               
chr11:36658713-36659046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
76-388
               

               
Cow position:
               
chr11:36238887-36238594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
76-426
               

               
Cow position:
               
chr11:43898248-43897904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 114
               

               
Conread position:
               
77-227
               

               
Cow position:
               
chr11:32690862-32691013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
131, 148
               

               
Conread position:
               
77-332
               

               
Cow position:
               
chr11:71807458-71807704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 131
               

               
Conread position:
               
77-426
               

               
Cow position:
               
chr11:4662939-4663272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
290, 31
               

               
Conread position:
               
77-426
               

               
Cow position:
               
chr11:84890611-84890986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
133, 13
               

               
Conread position:
               
78-215
               

               
Cow position:
               
chr11:22747223-22747358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
69, 75
               

               
Conread position:
               
78-423
               

               
Cow position:
               
chr11:2092435-2092110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
78-426
               

               
Cow position:
               
chr11:33311085-33310738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
63, 135
               

               
Conread position:
               
78-426
               

               
Cow position:
               
chr11:34829678-34830013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
303, 95
               

               
Conread position:
               
78-426
               

               
Cow position:
               
chr11:71501026-71501356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
79-233
               

               
Cow position:
               
chr11:47882911-47882754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
79-378
               

               
Cow position:
               
chr11:44036828-44036539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
79-423
               

               
Cow position:
               
chr11:11232348-11232683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 74
               

               
Conread position:
               
79-426
               

               
Cow position:
               
chr11:44636648-44636994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 18
               

               
Conread position:
               
82-388
               

               
Cow position:
               
chr11:45631662-45631951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
127, 98
               

               
Conread position:
               
83-426
               

               
Cow position:
               
chr11:1362365-1362714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
83-426
               

               
Cow position:
               
chr11:30934519-30934192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
227, 94
               

               
Conread position:
               
85-215
               

               
Cow position:
               
chr11:3234176-3234045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 97
               

               
Conread position:
               
85-388
               

               
Cow position:
               
chr11:10213470-10213751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
125, 10
               

               
Conread position:
               
86-217
               

               
Cow position:
               
chr11:34413240-34413372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
86-253
               

               
Cow position:
               
chr11:64089998-64090165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
86-415
               

               
Cow position:
               
chr11:17661183-17660872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
123, 80
               

               
Conread position:
               
86-426
               

               
Cow position:
               
chr11:30355158-30354833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
86-426
               

               
Cow position:
               
chr11:35684401-35684731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
87-192
               

               
Cow position:
               
chr11:25320284-25320179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr11:47545229-47544894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr11:58588443-58588111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
284, 66
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr11:80761279-80761613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr11:8147800-8148139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 130
               

               
Conread position:
               
88-426
               

               
Cow position:
               
chr11:16342129-16342475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 199
               

               
Conread position:
               
88-426
               

               
Cow position:
               
chr11:18572898-18572570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
88-426
               

               
Cow position:
               
chr11:23128442-23128773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
90-208
               

               
Cow position:
               
chr11:3248611-3248728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
90-321
               

               
Cow position:
               
chr11:6194302-6194083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 136
               

               
Conread position:
               
90-340
               

               
Cow position:
               
chr11:65767295-65767056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
90-387
               

               
Cow position:
               
chr11:16842892-16843191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
90-388
               

               
Cow position:
               
chr11:12111363-12111654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
118, 69
               

               
Conread position:
               
90-388
               

               
Cow position:
               
chr11:56821147-56821443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
90-410
               

               
Cow position:
               
chr11:16232839-16233148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr11:56654653-56654313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr11:64406322-64406128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 133
               

               
Conread position:
               
92-426
               

               
Cow position:
               
chr11:50778461-50778137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
83, 90
               

               
Conread position:
               
93-387
               

               
Cow position:
               
chr11:38874313-38874592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
95-356
               

               
Cow position:
               
chr11:55494770-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 129
               

               
Conread position:
               
95-420
               

               
Cow position:
               
chr11:35873912-35874213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 130
               

               
Conread position:
               
96-279
               

               
Cow position:
               
chr11:28168333-28168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 128
               

               
Conread position:
               
96-386
               

               
Cow position:
               
chr11:45897959-45898240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
96-426
               

               
Cow position:
               
chr11:33341055-33341379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 118
               

               
Conread position:
               
96-426
               

               
Cow position:
               
chr11:63469965-63469649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 130
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr11:64638438-64638754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
112, 82
               

               
Conread position:
               
98-426
               

               
Cow position:
               
chr11:49934643-49934975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
236, 120
               

               
Conread position:
               
98-442
               

               
Cow position:
               
chr11:3833276-3833599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
263, 36
               

               
Conread position:
               
99-231
               

               
Cow position:
               
chr11:30484006-30483873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
99-422
               

               
Cow position:
               
chr11:31352465-31352802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 126
               

               
Conread position:
               
101-426
               

               
Cow position:
               
chr11:70620129-70619822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
247, 113
               

               
Conread position:
               
104-385
               

               
Cow position:
               
chr11:28691673-28691942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
109-415
               

               
Cow position:
               
chr11:82796212-82796502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
104, 117
               

               
Conread position:
               
115-422
               

               
Cow position:
               
chr11:30911933-30912222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
263, 34
               

               
Conread position:
               
117-388
               

               
Cow position:
               
chr11:24937734-24937475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 113
               

               
Conread position:
               
119-388
               

               
Cow position:
               
chr11:10620261-10620512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
119-404
               

               
Cow position:
               
chr11:67550311-67550576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
264, 95
               

               
Conread position:
               
123-426
               

               
Cow position:
               
chr11:70273369-70273067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 95
               

               
Conread position:
               
153-387
               

               
Cow position:
               
chr11:48042000-48042228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chr11:57170797-57171016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
153-421
               

               
Cow position:
               
chr11:18591401-18591662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr11:22931938-22932203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
182, 61
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr11:27386306-27386573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr11:56728982-56728713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr11:65431087-65430828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
236, 46
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr11:75355653-75355376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
154-422
               

               
Cow position:
               
chr11:14094388-14094654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
209, 63
               

               
Conread position:
               
154-422
               

               
Cow position:
               
chr11:30597025-30596767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 64
               

               
Conread position:
               
154-426
               

               
Cow position:
               
chr11:6154440-6154178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
154-426
               

               
Cow position:
               
chr11:10076800-10076542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
156-426
               

               
Cow position:
               
chr11:955397-955136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
54, 70
               

               
Conread position:
               
157-423
               

               
Cow position:
               
chr11:42792944-42793206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
163-388
               

               
Cow position:
               
chr11:14308662-14308451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr11:33824866-33825037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
166-398
               

               
Cow position:
               
chr11:67136408-67136640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
166-426
               

               
Cow position:
               
chr11:16251224-16251482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
166-430
               

               
Cow position:
               
chr11:59155856-59156108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
169-390
               

               
Cow position:
               
chr11:62979507-62979289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 51
               

               
Conread position:
               
180-423
               

               
Cow position:
               
chr11:7333714-7333952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
180-426
               

               
Cow position:
               
chr11:17968576-17968809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
215-381
               

               
Cow position:
               
chr11:78543917-78543752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
220-442
               

               
Cow position:
               
chr11:11752539-11752771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
224-388
               

               
Cow position:
               
chr11:62019621-62019785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
229-426
               

               
Cow position:
               
chr11:25320022-25319817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
151, 22
               

               
Conread position:
               
230-354
               

               
Cow position:
               
chr11:70741008-70741131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
233-387
               

               
Cow position:
               
chr11:46399091-46398937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
69, 120
               

               
Conread position:
               
233-388
               

               
Cow position:
               
chr11:64044206-64044052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
238-360
               

               
Cow position:
               
chr11:29266500-29266379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
238-387
               

               
Cow position:
               
chr11:41239309-41239460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
242-426
               

               
Cow position:
               
chr11:47193476-47193290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
154, 67
               

               
Conread position:
               
243-420
               

               
Cow position:
               
chr11:73478575-73478393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
245-388
               

               
Cow position:
               
chr11:35668760-35668905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
246-426
               

               
Cow position:
               
chr11:17321613-17321424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
247-426
               

               
Cow position:
               
chr11:17278714-17278896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
247-426
               

               
Cow position:
               
chr11:38194106-38193918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
248-426
               

               
Cow position:
               
chr11:50197480-50197678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
249-406
               

               
Cow position:
               
chr11:32609952-32609794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
249-442
               

               
Cow position:
               
chr11:35149113-35148917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 145
               

               
Conread position:
               
250-372
               

               
Cow position:
               
chr11:53512032-53511908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
250-388
               

               
Cow position:
               
chr11:55052827-55052696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
250-388
               

               
Cow position:
               
chr11:58614612-58614472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
250-388
               

               
Cow position:
               
chr11:63156960-63157099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
250-416
               

               
Cow position:
               
chr11:17192333-17192505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
250-421
               

               
Cow position:
               
chr11:77683116-77682943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
250-423
               

               
Cow position:
               
chr11:41438271-41438455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:2050531-2050346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:11469690-11469867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:17112685-17112860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:19508244-19508064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:36496792-36496620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:41598776-41598961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:59370961-59370781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 86
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr11:77241319-77241140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 96
               

               
Conread position:
               
251-385
               

               
Cow position:
               
chr11:18373025-18372892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
251-386
               

               
Cow position:
               
chr11:30867088-30866954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
251-388
               

               
Cow position:
               
chr11:12896942-12896813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
251-424
               

               
Cow position:
               
chr11:63518960-63518783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr11:36647305-36647127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr11:47899227-47899043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr11:64334799-64334624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr11:81174839-81174656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr11:81300662-81300846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
87, 75
               

               
Conread position:
               
251-442
               

               
Cow position:
               
chr11:1668624-1668429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
252-373
               

               
Cow position:
               
chr11:18509070-18509193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
252-382
               

               
Cow position:
               
chr11:21438162-21438032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-386
               

               
Cow position:
               
chr11:36672095-36672235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
252-387
               

               
Cow position:
               
chr11:51043984-51044119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-388
               

               
Cow position:
               
chr11:71492908-71493047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr11:19890808-19890651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr11:43914160-43913991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr11:83196445-83196268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chr11:65409208-65409389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:2309818-2309640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 78
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:8105727-8105549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:9837153-9837330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:21819498-21819678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:27462445-27462618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:34467533-34467369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:41577067-41577242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:47165197-47165371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:48901134-48901311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:48932638-48932817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:62808702-62808882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:63516773-63516590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:65495379-65495561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:68570719-68570905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:74929730-74929546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:75748380-75748201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
84, 60
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:76114598-76114421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:77207993-77207815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
145, 59
               

               
Conread position:
               
252-442
               

               
Cow position:
               
chr11:18484225-18484411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
252-442
               

               
Cow position:
               
chr11:41983506-41983698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
110, 127
               

               
Conread position:
               
252-442
               

               
Cow position:
               
chr11:85764885-85764700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
131, 71
               

               
Conread position:
               
252-443
               

               
Cow position:
               
chr11:2281347-2281542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
252-662
               

               
Cow position:
               
chr11:26483661-26483246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 218
               

               
Conread position:
               
253-351
               

               
Cow position:
               
chr11:75918288-75918190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
253-360
               

               
Cow position:
               
chr11:16907097-16907204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
253-387
               

               
Cow position:
               
chr11:8936545-8936673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
253-416
               

               
Cow position:
               
chr11:61246513-61246681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
253-422
               

               
Cow position:
               
chr11:73354108-73354283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr11:10992227-10992048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr11:30120720-30120895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
136, 109
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr11:63520719-63520539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr11:67951019-67951195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
254-388
               

               
Cow position:
               
chr11:37347424-37347287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
254-388
               

               
Cow position:
               
chr11:71846401-71846535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
254-416
               

               
Cow position:
               
chr11:49106002-49105834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
254-420
               

               
Cow position:
               
chr11:40258463-40258629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
254-421
               

               
Cow position:
               
chr11:4384566-4384396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
254-421
               

               
Cow position:
               
chr11:18341096-18341267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
127, 69
               

               
Conread position:
               
254-421
               

               
Cow position:
               
chr11:57111362-57111537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
254-443
               

               
Cow position:
               
chr11:60470232-60470432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
255-426
               

               
Cow position:
               
chr11:19788078-19787912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
255-426
               

               
Cow position:
               
chr11:36799358-36799532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
255-442
               

               
Cow position:
               
chr11:10388654-10388846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
255-442
               

               
Cow position:
               
chr11:35276245-35276049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
255-442
               

               
Cow position:
               
chr11:47586405-47586595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
256-388
               

               
Cow position:
               
chr11:35363441-35363308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
256-426
               

               
Cow position:
               
chr11:80825106-80824934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 124
               

               
Conread position:
               
258-383
               

               
Cow position:
               
chr11:47850968-47850842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
258-423
               

               
Cow position:
               
chr11:4412075-4412248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
258-426
               

               
Cow position:
               
chr11:82232360-82232187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
258-445
               

               
Cow position:
               
chr11:25165383-25165191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
129, 172
               

               
Conread position:
               
259-386
               

               
Cow position:
               
chr11:44819042-44818912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
259-426
               

               
Cow position:
               
chr11:65857799-65857624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
260-445
               

               
Cow position:
               
chr11:39057567-39057383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
118, 41
               

               
Conread position:
               
261-360
               

               
Cow position:
               
chr11:35258165-35258262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
261-423
               

               
Cow position:
               
chr11:10302252-10302419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
263-414
               

               
Cow position:
               
chr11:81138159-81138004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 97
               

               
Conread position:
               
263-426
               

               
Cow position:
               
chr11:11460427-11460264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
264-416
               

               
Cow position:
               
chr11:7315192-7315350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
266-433
               

               
Cow position:
               
chr11:60302028-60302197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
268-423
               

               
Cow position:
               
chr11:11533977-11534134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
270-422
               

               
Cow position:
               
chr11:72292162-72292014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
270-426
               

               
Cow position:
               
chr11:65159520-65159680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
271-386
               

               
Cow position:
               
chr11:64090156-64090271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
273-426
               

               
Cow position:
               
chr11:24601899-24601737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
274-426
               

               
Cow position:
               
chr11:79019598-79019749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
274-426
               

               
Cow position:
               
chr11:86926002-86926153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
275-426
               

               
Cow position:
               
chr11:81614713-81614866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
280-426
               

               
Cow position:
               
chr11:35881829-35881678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
283-423
               

               
Cow position:
               
chr11:62376520-62376668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 79
               

               
Conread position:
               
289-426
               

               
Cow position:
               
chr11:53553146-53553018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
297-426
               

               
Cow position:
               
chr11:15608389-15608527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
297-429
               

               
Cow position:
               
chr11:10294493-10294359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
323-426
               

               
Cow position:
               
chr11:31227865-31227761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
330-423
               

               
Cow position:
               
chr11:39034318-39034224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               
Show alignments to all cow chromosomes.