• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
LyN1-MLN01E020019
        

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:35341944-35342107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr6:32006213-32006399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr6:58697385-58697577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr6:4323565-4323383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:53711646-53711453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr6:22876684-22876896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr6:60850941-60850726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr6:67574633-67574414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:69334073-69334291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:48097360-48097589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:26155388-26155154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr6:55282049-55282290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr6:63066080-63065828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 236
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr6:67451129-67451373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr6:66979114-66978856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 157
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr6:60265927-60266215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr6:2078573-2078865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr6:60468474-60468170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr6:24536282-24536618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
9, 126
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr6:5330657-5330337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr6:24110528-24110196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr6:68376072-68376417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr6:13565330-13564987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
16, 118
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr6:60273768-60274112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr6:32287874-32287518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr6:4469010-4468629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
9, 114
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr6:24468156-24468525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr6:120480-120109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 29
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr6:23696237-23695825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr6:52478166-52478599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 99
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr6:60143956-60144349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:5095298-5095725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:7539817-7539399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
9, 153
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:12928384-12927945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:14949247-14949656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:17414206-17414626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:26728301-26728702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
306, 29
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:29210720-29210326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:35181010-35181428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 156
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:38207242-38207671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:40032423-40032017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:46558297-46557881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:61514954-61515373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:64432176-64431764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr6:10225409-10225590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr6:41657507-41657307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chr6:35415275-35415653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
3-172
               

               
Cow position:
               
chr6:54406565-54406728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr6:51529947-51530132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr6:35984893-35985087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr6:60186410-60186613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr6:36537122-36537323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr6:62437658-62437433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 123
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr6:50771120-50771341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 179
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr6:57320357-57320567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr6:1941593-1941816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chr6:44636273-44636487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
202, 27
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr6:37395160-37395483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr6:5609202-5609615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr6:32866980-32867381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr6:53460330-53460747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
4-145
               

               
Cow position:
               
chr6:21346913-21347053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr6:48278655-48278819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr6:3937027-3936821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
26, 172
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr6:16091137-16090938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr6:21470192-21470409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr6:30024117-30023901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
203, 30
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr6:67451424-67451630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr6:18954852-18955064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr6:62056851-62056586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr6:17068415-17068722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
4-388
               

               
Cow position:
               
chr6:53841263-53841631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 222
               

               
Conread position:
               
4-426
               

               
Cow position:
               
chr6:23532886-23532488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
4-426
               

               
Cow position:
               
chr6:44194316-44194720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 30
               

               
Conread position:
               
5-145
               

               
Cow position:
               
chr6:66058470-66058610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
5-167
               

               
Cow position:
               
chr6:34463351-34463512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chr6:55646710-55646876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chr6:35743219-35743050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chr6:36570705-36570531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr6:14383915-14383737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr6:34423221-34423397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr6:49686059-49685875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr6:5601939-5601737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 142
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr6:51933778-51933582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr6:21535279-21535064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr6:13040692-13040467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr6:53546268-53546054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr6:66839432-66839214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:1866970-1866748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr6:29775857-29775623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 135
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr6:18117810-18118120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr6:693906-694223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr6:50504695-50504373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr6:37332350-37332018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr6:143139-143460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr6:19293037-19292702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr6:59602976-59603315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chr6:11192241-11192583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
5-382
               

               
Cow position:
               
chr6:25614851-25615226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
5-385
               

               
Cow position:
               
chr6:57545990-57546343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
5-387
               

               
Cow position:
               
chr6:7128165-7128531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr6:15243078-15242704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr6:17313977-17313602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr6:61631369-61631741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
5-399
               

               
Cow position:
               
chr6:46282753-46283146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 221
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr6:14913995-14914402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
5-422
               

               
Cow position:
               
chr6:46859932-46860339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
5-422
               

               
Cow position:
               
chr6:51581016-51581428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
5-422
               

               
Cow position:
               
chr6:53024573-53024969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr6:49421557-49421949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr6:47356066-47355651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 154
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:7130622-7131046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 205
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:8966327-8965914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:15300601-15300992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:15937613-15938027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 209
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:32122134-32121736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:38441419-38441007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 187
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:44078754-44078346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:47575130-47574730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:50577754-50577345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:56850256-56849843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr6:65871270-65870849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
5-428
               

               
Cow position:
               
chr6:21456438-21456867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr6:60819754-60819326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr6:20157574-20157131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 224
               

               
Conread position:
               
6-170
               

               
Cow position:
               
chr6:63182523-63182361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
6-200
               

               
Cow position:
               
chr6:25772981-25773173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr6:58725605-58725381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
6-251
               

               
Cow position:
               
chr6:57079664-57079414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chr6:6965157-6965507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 135
               

               
Conread position:
               
6-426
               

               
Cow position:
               
chr6:54490508-54490915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
8-426
               

               
Cow position:
               
chr6:12338226-12337809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr6:38033093-38032933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
9-197
               

               
Cow position:
               
chr6:21350796-21350987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 146
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr6:21083306-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
9-216
               

               
Cow position:
               
chr6:12761515-12761305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr6:67069580-67069798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:61110017-61109792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr6:21293263-21293495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr6:18903802-18904078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 203
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr6:49437566-49437298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr6:3351263-3350973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
9-324
               

               
Cow position:
               
chr6:9302488-9302784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
9-359
               

               
Cow position:
               
chr6:58370982-58370650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
22, 71
               

               
Conread position:
               
9-387
               

               
Cow position:
               
chr6:60118377-60118015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
9-388
               

               
Cow position:
               
chr6:19264266-19264627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 25
               

               
Conread position:
               
9-388
               

               
Cow position:
               
chr6:31535338-31535699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
9-420
               

               
Cow position:
               
chr6:18447280-18447678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
9-423
               

               
Cow position:
               
chr6:29240167-29239772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
9-423
               

               
Cow position:
               
chr6:35436222-35435832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:10176064-10176478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 65
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:13687582-13687986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:17997082-17997490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 181
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:24031598-24031200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:24781316-24781739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:36196437-36196039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 32
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:36203056-36202653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:38853421-38853833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr6:47520289-47519871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 217
               

               
Conread position:
               
9-432
               

               
Cow position:
               
chr6:37149417-37149013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 26
               

               
Conread position:
               
9-442
               

               
Cow position:
               
chr6:63720424-63720006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 16
               

               
Conread position:
               
9-442
               

               
Cow position:
               
chr6:66131554-66131115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 185
               

               
Conread position:
               
9-461
               

               
Cow position:
               
chr6:16700489-16700056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
10-215
               

               
Cow position:
               
chr6:55548300-55548507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
10-231
               

               
Cow position:
               
chr6:55417299-55417517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chr6:10039960-10039617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr6:6264886-6264480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
10-420
               

               
Cow position:
               
chr6:11247002-11246595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
10-424
               

               
Cow position:
               
chr6:29485317-29484917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
10-424
               

               
Cow position:
               
chr6:67187912-67187518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
10-426
               

               
Cow position:
               
chr6:10105749-10106171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 24
               

               
Conread position:
               
10-426
               

               
Cow position:
               
chr6:49398395-49398791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
10-426
               

               
Cow position:
               
chr6:67951191-67950784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
10-442
               

               
Cow position:
               
chr6:46466052-46465637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
11-169
               

               
Cow position:
               
chr6:7291544-7291389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
11-169
               

               
Cow position:
               
chr6:8726910-8726751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
11-421
               

               
Cow position:
               
chr6:21061658-21062053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
11-426
               

               
Cow position:
               
chr6:7189898-7190294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
309, 58
               

               
Conread position:
               
11-426
               

               
Cow position:
               
chr6:39358110-39358516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
13-388
               

               
Cow position:
               
chr6:15446962-15447336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 219
               

               
Conread position:
               
14-242
               

               
Cow position:
               
chr6:4702588-4702823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 172
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr6:68816397-68816114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
12, 154
               

               
Conread position:
               
17-421
               

               
Cow position:
               
chr6:5113820-5114217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 167
               

               
Conread position:
               
17-426
               

               
Cow position:
               
chr6:6060347-6060732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
18-321
               

               
Cow position:
               
chr6:60517064-60516763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 157
               

               
Conread position:
               
18-426
               

               
Cow position:
               
chr6:15305797-15305407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 155
               

               
Conread position:
               
20-229
               

               
Cow position:
               
chr6:2014349-2014142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
20-312
               

               
Cow position:
               
chr6:2585165-2584885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr6:4383698-4383317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr6:47305566-47305164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
20-459
               

               
Cow position:
               
chr6:45690394-45690797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
187, 14
               

               
Conread position:
               
22-426
               

               
Cow position:
               
chr6:26915548-26915155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 68
               

               
Conread position:
               
24-356
               

               
Cow position:
               
chr6:61523986-61524301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 202
               

               
Conread position:
               
25-291
               

               
Cow position:
               
chr6:34119146-34119390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
195, 43
               

               
Conread position:
               
26-397
               

               
Cow position:
               
chr6:50984441-50984087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
27-153
               

               
Cow position:
               
chr6:68602457-68602333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
27-333
               

               
Cow position:
               
chr6:41375985-41375693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
182, 140
               

               
Conread position:
               
27-376
               

               
Cow position:
               
chr6:16266944-16266597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
51, 171
               

               
Conread position:
               
27-442
               

               
Cow position:
               
chr6:54365114-54365515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr6:411006-411185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
28-226
               

               
Cow position:
               
chr6:12623723-12623531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
179, 45
               

               
Conread position:
               
28-227
               

               
Cow position:
               
chr6:1870983-1871182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
180, 196
               

               
Conread position:
               
28-231
               

               
Cow position:
               
chr6:48379397-48379603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
28-247
               

               
Cow position:
               
chr6:36920761-36920979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
28-354
               

               
Cow position:
               
chr6:9718703-9719021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
297, 39
               

               
Conread position:
               
28-359
               

               
Cow position:
               
chr6:17705048-17704716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 171
               

               
Conread position:
               
28-362
               

               
Cow position:
               
chr6:54207918-54208245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 200
               

               
Conread position:
               
28-388
               

               
Cow position:
               
chr6:445542-445183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
28-388
               

               
Cow position:
               
chr6:4691751-4692112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
28-388
               

               
Cow position:
               
chr6:50747214-50746852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
28-407
               

               
Cow position:
               
chr6:60740224-60739859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 42
               

               
Conread position:
               
28-421
               

               
Cow position:
               
chr6:52413076-52412684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr6:12091772-12092159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr6:19696023-19695631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr6:35842874-35842482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr6:38641708-38641323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 133
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr6:48282209-48281820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr6:51835612-51835225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
28-434
               

               
Cow position:
               
chr6:8125543-8125148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
28-442
               

               
Cow position:
               
chr6:66434168-66433755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
50, 140
               

               
Conread position:
               
32-145
               

               
Cow position:
               
chr6:53235443-53235555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
32-166
               

               
Cow position:
               
chr6:2757992-2757861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
32-227
               

               
Cow position:
               
chr6:61168975-61168771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 201
               

               
Conread position:
               
32-247
               

               
Cow position:
               
chr6:58459927-58459716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
178, 23
               

               
Conread position:
               
32-325
               

               
Cow position:
               
chr6:67643479-67643760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
32-387
               

               
Cow position:
               
chr6:22253752-22254118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
32-422
               

               
Cow position:
               
chr6:39093955-39093573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 34
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr6:2547465-2547066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr6:20097747-20098139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 195
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr6:21736692-21737057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
32-426
               

               
Cow position:
               
chr6:54133021-54132643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 26
               

               
Conread position:
               
32-442
               

               
Cow position:
               
chr6:66363022-66363437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
33-388
               

               
Cow position:
               
chr6:8562927-8562588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
33-388
               

               
Cow position:
               
chr6:15243471-15243124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
33-388
               

               
Cow position:
               
chr6:38640443-38640099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 191
               

               
Conread position:
               
33-426
               

               
Cow position:
               
chr6:40774125-40774523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
175, 24
               

               
Conread position:
               
35-167
               

               
Cow position:
               
chr6:40682461-40682590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
37-311
               

               
Cow position:
               
chr6:31078663-31078927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
38-423
               

               
Cow position:
               
chr6:61269515-61269158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
41-372
               

               
Cow position:
               
chr6:21514405-21514735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
41-387
               

               
Cow position:
               
chr6:57571679-57571346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 35
               

               
Conread position:
               
41-422
               

               
Cow position:
               
chr6:8637478-8637104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
145, 35
               

               
Conread position:
               
42-423
               

               
Cow position:
               
chr6:17333850-17334229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
51-426
               

               
Cow position:
               
chr6:54431021-54430644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
55-426
               

               
Cow position:
               
chr6:67214939-67214566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
62-226
               

               
Cow position:
               
chr6:43651935-43651768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
62-357
               

               
Cow position:
               
chr6:3592580-3592300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
63-388
               

               
Cow position:
               
chr6:416303-415966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
64-410
               

               
Cow position:
               
chr6:48112374-48112045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
65-216
               

               
Cow position:
               
chr6:46571284-46571132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
65-426
               

               
Cow position:
               
chr6:53519445-53519798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
65-426
               

               
Cow position:
               
chr6:66531646-66531980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
66-206
               

               
Cow position:
               
chr6:19131605-19131467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
66-335
               

               
Cow position:
               
chr6:23465856-23466108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
66-420
               

               
Cow position:
               
chr6:35993760-35993408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr6:8209429-8209764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr6:16423879-16423524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr6:18048847-18049201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr6:51675085-51674743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
67-421
               

               
Cow position:
               
chr6:7989242-7989586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
67-426
               

               
Cow position:
               
chr6:59069444-59069803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
68-285
               

               
Cow position:
               
chr6:19259164-19259374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 142
               

               
Conread position:
               
68-426
               

               
Cow position:
               
chr6:25407215-25407567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
71-388
               

               
Cow position:
               
chr6:1499820-1499510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
71-388
               

               
Cow position:
               
chr6:37199366-37199667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 42
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr6:54864488-54864842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
72-201
               

               
Cow position:
               
chr6:28900497-28900368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-223
               

               
Cow position:
               
chr6:58227551-58227391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
72-372
               

               
Cow position:
               
chr6:58597335-58597620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
72-388
               

               
Cow position:
               
chr6:21235214-21234912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 146
               

               
Conread position:
               
72-422
               

               
Cow position:
               
chr6:21869478-21869816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 152
               

               
Conread position:
               
72-426
               

               
Cow position:
               
chr6:6401121-6400773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 34
               

               
Conread position:
               
72-426
               

               
Cow position:
               
chr6:59301619-59302000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
128, 22
               

               
Conread position:
               
73-231
               

               
Cow position:
               
chr6:61569800-61569643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
73-388
               

               
Cow position:
               
chr6:35471340-35471651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
73-426
               

               
Cow position:
               
chr6:6098096-6098457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 290
               

               
Conread position:
               
73-426
               

               
Cow position:
               
chr6:16191841-16191491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
74-240
               

               
Cow position:
               
chr6:51463467-51463632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 7
               

               
Conread position:
               
74-294
               

               
Cow position:
               
chr6:66570608-66570399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 22
               

               
Conread position:
               
74-387
               

               
Cow position:
               
chr6:54867686-54867385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 152
               

               
Conread position:
               
74-388
               

               
Cow position:
               
chr6:16316485-16316178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
74-443
               

               
Cow position:
               
chr6:36652592-36652225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
75-357
               

               
Cow position:
               
chr6:51969242-51968963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
75-364
               

               
Cow position:
               
chr6:17548807-17549089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
76-426
               

               
Cow position:
               
chr6:14958173-14958524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
77-208
               

               
Cow position:
               
chr6:23938228-23938095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
78-226
               

               
Cow position:
               
chr6:1002098-1002247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
78-352
               

               
Cow position:
               
chr6:66375169-66375426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
132, 9
               

               
Conread position:
               
78-426
               

               
Cow position:
               
chr6:47339191-47339523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
78-426
               

               
Cow position:
               
chr6:47799458-47799123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 140
               

               
Conread position:
               
79-277
               

               
Cow position:
               
chr6:53090172-53089986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
130, 25
               

               
Conread position:
               
79-305
               

               
Cow position:
               
chr6:16352190-16352396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
79-426
               

               
Cow position:
               
chr6:36470398-36470738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
129, 142
               

               
Conread position:
               
81-426
               

               
Cow position:
               
chr6:8787875-8788212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
246, 129
               

               
Conread position:
               
83-426
               

               
Cow position:
               
chr6:52901398-52901066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 135
               

               
Conread position:
               
84-426
               

               
Cow position:
               
chr6:19681366-19681699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 141
               

               
Conread position:
               
84-430
               

               
Cow position:
               
chr6:63047751-63047398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 169
               

               
Conread position:
               
85-376
               

               
Cow position:
               
chr6:54573418-54573123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
11, 169
               

               
Conread position:
               
85-411
               

               
Cow position:
               
chr6:45064860-45065165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
85-426
               

               
Cow position:
               
chr6:9452612-9452948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
86-382
               

               
Cow position:
               
chr6:50976207-50975932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 141
               

               
Conread position:
               
86-421
               

               
Cow position:
               
chr6:53652197-53651871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 66
               

               
Conread position:
               
86-421
               

               
Cow position:
               
chr6:54990844-54991172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 149
               

               
Conread position:
               
86-442
               

               
Cow position:
               
chr6:11169860-11169513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
87-388
               

               
Cow position:
               
chr6:42565843-42565557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr6:28976884-28977204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 129
               

               
Conread position:
               
88-423
               

               
Cow position:
               
chr6:38218821-38218500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
88-443
               

               
Cow position:
               
chr6:12551427-12551073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
89-231
               

               
Cow position:
               
chr6:68685707-68685565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
118, 98
               

               
Conread position:
               
90-388
               

               
Cow position:
               
chr6:58590426-58590146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 131
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr6:9008459-9008786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
120, 136
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr6:31564185-31564508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr6:66874501-66874187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
90-442
               

               
Cow position:
               
chr6:16707165-16706814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
120, 79
               

               
Conread position:
               
92-416
               

               
Cow position:
               
chr6:49002589-49002890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
239, 83
               

               
Conread position:
               
93-361
               

               
Cow position:
               
chr6:37463172-37462917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 125
               

               
Conread position:
               
93-442
               

               
Cow position:
               
chr6:57164575-57164237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
228, 23
               

               
Conread position:
               
96-301
               

               
Cow position:
               
chr6:32853334-32853141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
114, 76
               

               
Conread position:
               
96-340
               

               
Cow position:
               
chr6:20929367-20929600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
96-377
               

               
Cow position:
               
chr6:47640286-47640554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 6
               

               
Conread position:
               
96-426
               

               
Cow position:
               
chr6:21231672-21231361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
7, 131
               

               
Conread position:
               
96-426
               

               
Cow position:
               
chr6:60350145-60350474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 130
               

               
Conread position:
               
96-434
               

               
Cow position:
               
chr6:37634942-37634606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
97-227
               

               
Cow position:
               
chr6:57328248-57328377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
98-426
               

               
Cow position:
               
chr6:56843299-56842984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 71
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr6:31526190-31525876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
99-426
               

               
Cow position:
               
chr6:4864403-4864715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
111, 119
               

               
Conread position:
               
99-426
               

               
Cow position:
               
chr6:35613273-35613589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 131
               

               
Conread position:
               
104-426
               

               
Cow position:
               
chr6:38614951-38614649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
106, 69
               

               
Conread position:
               
116-388
               

               
Cow position:
               
chr6:61608639-61608379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 117
               

               
Conread position:
               
116-415
               

               
Cow position:
               
chr6:899166-899454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 108
               

               
Conread position:
               
116-426
               

               
Cow position:
               
chr6:23247839-23248138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
119-378
               

               
Cow position:
               
chr6:15022423-15022680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 107
               

               
Conread position:
               
123-426
               

               
Cow position:
               
chr6:130043-130340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 64
               

               
Conread position:
               
132-422
               

               
Cow position:
               
chr6:25008830-25008543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
134-423
               

               
Cow position:
               
chr6:52248021-52248307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
145-426
               

               
Cow position:
               
chr6:44099184-44098909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
149-446
               

               
Cow position:
               
chr6:8804437-8804725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
228, 26
               

               
Conread position:
               
153-389
               

               
Cow position:
               
chr6:12829135-12829355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
153-414
               

               
Cow position:
               
chr6:59109035-59108779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
185, 65
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr6:1944803-1944551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr6:24962235-24961970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
153-442
               

               
Cow position:
               
chr6:57405035-57405317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
192, 67
               

               
Conread position:
               
154-329
               

               
Cow position:
               
chr6:36493452-36493622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
154-413
               

               
Cow position:
               
chr6:12542841-12543095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
154-426
               

               
Cow position:
               
chr6:67968521-67968789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
160-423
               

               
Cow position:
               
chr6:49410614-49410861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr6:21542403-21542155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 63
               

               
Conread position:
               
180-378
               

               
Cow position:
               
chr6:18961452-18961638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
180-424
               

               
Cow position:
               
chr6:44371882-44372116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
209, 34
               

               
Conread position:
               
180-429
               

               
Cow position:
               
chr6:9839235-9838984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
183-426
               

               
Cow position:
               
chr6:34031721-34031493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
220-426
               

               
Cow position:
               
chr6:48806958-48807170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
228-425
               

               
Cow position:
               
chr6:19401886-19401688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
234-426
               

               
Cow position:
               
chr6:9736627-9736817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
235-386
               

               
Cow position:
               
chr6:7824783-7824634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
237-419
               

               
Cow position:
               
chr6:22877139-22877328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 79
               

               
Conread position:
               
238-426
               

               
Cow position:
               
chr6:2582889-2582699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
145, 65
               

               
Conread position:
               
238-426
               

               
Cow position:
               
chr6:2607632-2607438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
239-388
               

               
Cow position:
               
chr6:48572866-48573011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
239-426
               

               
Cow position:
               
chr6:28477197-28477007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr6:24327125-24327328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 71
               

               
Conread position:
               
245-417
               

               
Cow position:
               
chr6:32986987-32987164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 118
               

               
Conread position:
               
246-426
               

               
Cow position:
               
chr6:53731532-53731346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
249-426
               

               
Cow position:
               
chr6:34076034-34075844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
250-384
               

               
Cow position:
               
chr6:1907547-1907416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
250-420
               

               
Cow position:
               
chr6:33302418-33302243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
250-423
               

               
Cow position:
               
chr6:33277047-33276867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr6:242816-242639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr6:46571123-46570943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
127, 110
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr6:48344338-48344153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
251-374
               

               
Cow position:
               
chr6:1510593-1510470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-386
               

               
Cow position:
               
chr6:60667425-60667291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 113
               

               
Conread position:
               
251-387
               

               
Cow position:
               
chr6:65852541-65852674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
251-388
               

               
Cow position:
               
chr6:48988446-48988305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
251-388
               

               
Cow position:
               
chr6:60930893-60931026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
251-414
               

               
Cow position:
               
chr6:6722106-6721949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr6:10332085-10332271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
251-442
               

               
Cow position:
               
chr6:58173188-58172992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 71
               

               
Conread position:
               
252-347
               

               
Cow position:
               
chr6:17245602-17245697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
252-382
               

               
Cow position:
               
chr6:38233962-38233834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
252-387
               

               
Cow position:
               
chr6:19351150-19351285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-388
               

               
Cow position:
               
chr6:40834465-40834601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-388
               

               
Cow position:
               
chr6:55282283-55282418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
252-413
               

               
Cow position:
               
chr6:58364006-58364174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
252-419
               

               
Cow position:
               
chr6:53711119-53710948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
252-422
               

               
Cow position:
               
chr6:24223153-24223331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
252-422
               

               
Cow position:
               
chr6:46292343-46292509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr6:20230824-20230998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 130
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr6:28318408-28318237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
125, 102
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr6:65264534-65264707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:607264-607087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:12500862-12500685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:14850710-14850889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:16411195-16411020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
84, 110
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:18968776-18968948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:25773384-25773556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:49685588-49685410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:60442423-60442243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 102
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr6:61137378-61137196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
123, 74
               

               
Conread position:
               
252-442
               

               
Cow position:
               
chr6:15922995-15923192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
253-423
               

               
Cow position:
               
chr6:32210625-32210799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr6:2013022-2012844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr6:17090602-17090420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr6:61575612-61575428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
253-426
               

               
Cow position:
               
chr6:62324996-62324816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
254-412
               

               
Cow position:
               
chr6:64449394-64449228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
254-415
               

               
Cow position:
               
chr6:44984332-44984162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
254-416
               

               
Cow position:
               
chr6:24515195-24515358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
254-422
               

               
Cow position:
               
chr6:54288076-54287909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
254-426
               

               
Cow position:
               
chr6:1886662-1886838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
77, 53
               

               
Conread position:
               
254-426
               

               
Cow position:
               
chr6:30786153-30786323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
129, 69
               

               
Conread position:
               
254-426
               

               
Cow position:
               
chr6:52025650-52025829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
254-426
               

               
Cow position:
               
chr6:53401356-53401194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
254-430
               

               
Cow position:
               
chr6:13040453-13040275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
254-430
               

               
Cow position:
               
chr6:37739191-37739008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 176
               

               
Conread position:
               
255-387
               

               
Cow position:
               
chr6:9219274-9219142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
255-426
               

               
Cow position:
               
chr6:62924995-62925168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
7, 106
               

               
Conread position:
               
255-426
               

               
Cow position:
               
chr6:68049433-68049260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
255-442
               

               
Cow position:
               
chr6:12623465-12623278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
255-442
               

               
Cow position:
               
chr6:30826031-30826229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
258-388
               

               
Cow position:
               
chr6:44757035-44756910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
258-426
               

               
Cow position:
               
chr6:16738018-16737845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
258-446
               

               
Cow position:
               
chr6:3978664-3978861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 180
               

               
Conread position:
               
259-426
               

               
Cow position:
               
chr6:7103232-7103411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
260-388
               

               
Cow position:
               
chr6:10254236-10254111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 51
               

               
Conread position:
               
261-423
               

               
Cow position:
               
chr6:54884915-54885085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
261-426
               

               
Cow position:
               
chr6:59620664-59620494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
262-426
               

               
Cow position:
               
chr6:40138722-40138880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
263-426
               

               
Cow position:
               
chr6:36928649-36928476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
263-426
               

               
Cow position:
               
chr6:47540524-47540351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
263-426
               

               
Cow position:
               
chr6:48425328-48425496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
263-426
               

               
Cow position:
               
chr6:62479170-62479341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
263-442
               

               
Cow position:
               
chr6:21587424-21587614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
271-388
               

               
Cow position:
               
chr6:18904356-18904470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
271-423
               

               
Cow position:
               
chr6:1783792-1783944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
271-426
               

               
Cow position:
               
chr6:21110950-21110795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
285-426
               

               
Cow position:
               
chr6:18988184-18988041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
285-426
               

               
Cow position:
               
chr6:59015587-59015736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
289-423
               

               
Cow position:
               
chr6:21535023-21534887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
291-426
               

               
Cow position:
               
chr6:5462087-5462224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
293-426
               

               
Cow position:
               
chr6:51398764-51398626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
293-426
               

               
Cow position:
               
chr6:54140773-54140638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
300-426
               

               
Cow position:
               
chr6:1002277-1002408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
335-426
               

               
Cow position:
               
chr6:37331882-37331791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.