• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
LyN1-MLN01F030047
        

               
Conread position:
               
174-394
               

               
Cow position:
               
chr6:48449097-48448879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
190-497
               

               
Cow position:
               
chr6:7801132-7801436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
195-777
               

               
Cow position:
               
chr6:15243103-15242511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 262
               

               
Conread position:
               
198-665
               

               
Cow position:
               
chr6:53024552-53024998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
131, 97
               

               
Conread position:
               
199-592
               

               
Cow position:
               
chr6:54622704-54623122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
199-618
               

               
Cow position:
               
chr6:19264240-19264653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
201-562
               

               
Cow position:
               
chr6:62370931-62371281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 48
               

               
Conread position:
               
201-660
               

               
Cow position:
               
chr6:63720448-63720004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
132, 93
               

               
Conread position:
               
202-333
               

               
Cow position:
               
chr6:53401835-53401709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
202-689
               

               
Cow position:
               
chr6:53460316-53460799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 200
               

               
Conread position:
               
203-667
               

               
Cow position:
               
chr6:10399655-10400097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
204-391
               

               
Cow position:
               
chr6:32006204-32006397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
135, 19
               

               
Conread position:
               
204-441
               

               
Cow position:
               
chr6:50810417-50810662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 166
               

               
Conread position:
               
204-524
               

               
Cow position:
               
chr6:68272855-68272512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
204-689
               

               
Cow position:
               
chr6:51581000-51581487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
204-718
               

               
Cow position:
               
chr6:21535293-21534803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 248
               

               
Conread position:
               
205-302
               

               
Cow position:
               
chr6:63233768-63233672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
205-333
               

               
Cow position:
               
chr6:59759421-59759293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
205-406
               

               
Cow position:
               
chr6:32336291-32336069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
205-412
               

               
Cow position:
               
chr6:55044390-55044603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
205-440
               

               
Cow position:
               
chr6:58304665-58304425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
205-498
               

               
Cow position:
               
chr6:36454362-36454634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
205-582
               

               
Cow position:
               
chr6:48803388-48803767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
205-586
               

               
Cow position:
               
chr6:60118396-60118024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
205-598
               

               
Cow position:
               
chr6:62670123-62669731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
205-713
               

               
Cow position:
               
chr6:64449609-64449140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
206-394
               

               
Cow position:
               
chr6:53346217-53346029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
207-478
               

               
Cow position:
               
chr6:41014724-41015000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
81, 198
               

               
Conread position:
               
207-545
               

               
Cow position:
               
chr6:27239756-27240095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
207-635
               

               
Cow position:
               
chr6:47356077-47355654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
207-689
               

               
Cow position:
               
chr6:54490496-54490968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 91
               

               
Conread position:
               
207-718
               

               
Cow position:
               
chr6:611793-611311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 101
               

               
Conread position:
               
207-718
               

               
Cow position:
               
chr6:13687565-13688067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
208-333
               

               
Cow position:
               
chr6:51019399-51019272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
208-391
               

               
Cow position:
               
chr6:14263640-14263833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 107
               

               
Conread position:
               
208-410
               

               
Cow position:
               
chr6:23058463-23058252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 195
               

               
Conread position:
               
208-416
               

               
Cow position:
               
chr6:30825528-30825731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
208-418
               

               
Cow position:
               
chr6:66058003-66057805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
208-432
               

               
Cow position:
               
chr6:50771112-50771340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
208-442
               

               
Cow position:
               
chr6:50269433-50269674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 186
               

               
Conread position:
               
208-531
               

               
Cow position:
               
chr6:22215210-22215544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 248
               

               
Conread position:
               
208-532
               

               
Cow position:
               
chr6:1429883-1429561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
208-575
               

               
Cow position:
               
chr6:19293047-19292687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
208-578
               

               
Cow position:
               
chr6:25614840-25615226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 198
               

               
Conread position:
               
208-583
               

               
Cow position:
               
chr6:53841254-53841630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 201
               

               
Conread position:
               
208-680
               

               
Cow position:
               
chr6:35436236-35435784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
208-713
               

               
Cow position:
               
chr6:43345191-43345706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 194
               

               
Conread position:
               
208-797
               

               
Cow position:
               
chr6:143129-143721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
209-318
               

               
Cow position:
               
chr6:12711544-12711653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
209-334
               

               
Cow position:
               
chr6:34463342-34463466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
209-338
               

               
Cow position:
               
chr6:4760242-4760109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
209-340
               

               
Cow position:
               
chr6:12099442-12099571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
209-362
               

               
Cow position:
               
chr6:26072975-26073132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
209-369
               

               
Cow position:
               
chr6:45633747-45633907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
209-374
               

               
Cow position:
               
chr6:7291559-7291390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 92
               

               
Conread position:
               
209-384
               

               
Cow position:
               
chr6:43540014-43540186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
172, 101
               

               
Conread position:
               
209-386
               

               
Cow position:
               
chr6:16137519-16137709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
209-390
               

               
Cow position:
               
chr6:17404810-17404619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
209-390
               

               
Cow position:
               
chr6:24903328-24903520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr6:1173699-1173899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr6:21052198-21052392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr6:34076411-34076219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr6:66293730-66293542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
209-395
               

               
Cow position:
               
chr6:59297294-59297106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
209-408
               

               
Cow position:
               
chr6:15974272-15974477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
209-408
               

               
Cow position:
               
chr6:36163994-36163786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 194
               

               
Conread position:
               
209-409
               

               
Cow position:
               
chr6:19936320-19936532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
209-409
               

               
Cow position:
               
chr6:24776385-24776180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
209-411
               

               
Cow position:
               
chr6:24491279-24491068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
209-411
               

               
Cow position:
               
chr6:53711650-53711442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
209-416
               

               
Cow position:
               
chr6:8468907-8468700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
125, 43
               

               
Conread position:
               
209-440
               

               
Cow position:
               
chr6:60850948-60850712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 191
               

               
Conread position:
               
209-441
               

               
Cow position:
               
chr6:54831726-54831486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
209-441
               

               
Cow position:
               
chr6:54846027-54846269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 195
               

               
Conread position:
               
209-446
               

               
Cow position:
               
chr6:20896939-20897183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
86, 191
               

               
Conread position:
               
209-454
               

               
Cow position:
               
chr6:8688603-8688853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 14
               

               
Conread position:
               
209-454
               

               
Cow position:
               
chr6:63426910-63426662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
93, 182
               

               
Conread position:
               
209-464
               

               
Cow position:
               
chr6:62539359-62539601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
209-470
               

               
Cow position:
               
chr6:1103498-1103752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
209-473
               

               
Cow position:
               
chr6:35728096-35727823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
209-478
               

               
Cow position:
               
chr6:56716056-56715796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
209-478
               

               
Cow position:
               
chr6:62683623-62683343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
75, 61
               

               
Conread position:
               
209-499
               

               
Cow position:
               
chr6:7119383-7119664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
209-499
               

               
Cow position:
               
chr6:62437665-62437370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 193
               

               
Conread position:
               
209-500
               

               
Cow position:
               
chr6:2078569-2078865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
209-500
               

               
Cow position:
               
chr6:55417285-55417572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 87
               

               
Conread position:
               
209-512
               

               
Cow position:
               
chr6:6194854-6195168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 251
               

               
Conread position:
               
209-514
               

               
Cow position:
               
chr6:51529941-51530245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
209-515
               

               
Cow position:
               
chr6:59602967-59603271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
209-532
               

               
Cow position:
               
chr6:23401747-23402067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 92
               

               
Conread position:
               
209-532
               

               
Cow position:
               
chr6:24339537-24339207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
209-533
               

               
Cow position:
               
chr6:10225402-10225717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
209-533
               

               
Cow position:
               
chr6:60273764-60274086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
125, 14
               

               
Conread position:
               
209-535
               

               
Cow position:
               
chr6:19045878-19045546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 199
               

               
Conread position:
               
209-536
               

               
Cow position:
               
chr6:5330661-5330334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
209-536
               

               
Cow position:
               
chr6:16266977-16266641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
76, 200
               

               
Conread position:
               
209-536
               

               
Cow position:
               
chr6:52658202-52657849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 197
               

               
Conread position:
               
209-536
               

               
Cow position:
               
chr6:67282130-67281816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
209-540
               

               
Cow position:
               
chr6:46273886-46274214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
209-542
               

               
Cow position:
               
chr6:28559788-28559436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
95, 248
               

               
Conread position:
               
209-558
               

               
Cow position:
               
chr6:33510037-33509689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 175
               

               
Conread position:
               
209-558
               

               
Cow position:
               
chr6:46173010-46173354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
209-569
               

               
Cow position:
               
chr6:11192232-11192583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 121
               

               
Conread position:
               
209-572
               

               
Cow position:
               
chr6:6965147-6965507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
209-574
               

               
Cow position:
               
chr6:17816747-17817105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
209-583
               

               
Cow position:
               
chr6:48988682-48988306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
85, 195
               

               
Conread position:
               
209-616
               

               
Cow position:
               
chr6:58370996-58370593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
209-664
               

               
Cow position:
               
chr6:55545923-55546359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 199
               

               
Conread position:
               
209-680
               

               
Cow position:
               
chr6:899073-899503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
459, 62
               

               
Conread position:
               
209-682
               

               
Cow position:
               
chr6:51893277-51893734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
286, 56
               

               
Conread position:
               
209-686
               

               
Cow position:
               
chr6:53138690-53139151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 73
               

               
Conread position:
               
209-688
               

               
Cow position:
               
chr6:48572652-48573109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
209-689
               

               
Cow position:
               
chr6:15937604-15938076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 202
               

               
Conread position:
               
209-689
               

               
Cow position:
               
chr6:50090893-50090412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
75, 189
               

               
Conread position:
               
209-692
               

               
Cow position:
               
chr6:7189882-7190351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
209-710
               

               
Cow position:
               
chr6:12501077-12500608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
209-710
               

               
Cow position:
               
chr6:35726338-35725843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 91
               

               
Conread position:
               
209-712
               

               
Cow position:
               
chr6:17557623-17557124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
209-713
               

               
Cow position:
               
chr6:5095294-5095806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
209-713
               

               
Cow position:
               
chr6:46466066-46465576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 79
               

               
Conread position:
               
209-713
               

               
Cow position:
               
chr6:47305587-47305076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
209-713
               

               
Cow position:
               
chr6:53932597-53933092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 110
               

               
Conread position:
               
209-717
               

               
Cow position:
               
chr6:18080268-18080769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 174
               

               
Conread position:
               
209-718
               

               
Cow position:
               
chr6:8562962-8562460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
209-718
               

               
Cow position:
               
chr6:32122143-32121655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 106
               

               
Conread position:
               
209-718
               

               
Cow position:
               
chr6:37635017-37634534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
209-718
               

               
Cow position:
               
chr6:47520303-47519795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 199
               

               
Conread position:
               
209-745
               

               
Cow position:
               
chr6:32287877-32287339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
209-783
               

               
Cow position:
               
chr6:827478-828027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
259, 72
               

               
Conread position:
               
209-791
               

               
Cow position:
               
chr6:18954844-18955389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
147, 41
               

               
Conread position:
               
209-791
               

               
Cow position:
               
chr6:31535325-31535912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 94
               

               
Conread position:
               
209-796
               

               
Cow position:
               
chr6:63251673-63252260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 193
               

               
Conread position:
               
210-307
               

               
Cow position:
               
chr6:26929196-26929292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
210-319
               

               
Cow position:
               
chr6:18903790-18903899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-332
               

               
Cow position:
               
chr6:19681965-19681840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
210-334
               

               
Cow position:
               
chr6:31928886-31928758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
210-335
               

               
Cow position:
               
chr6:16016282-16016154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
210-335
               

               
Cow position:
               
chr6:33461627-33461504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
210-338
               

               
Cow position:
               
chr6:60088228-60088359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
210-340
               

               
Cow position:
               
chr6:23381419-23381553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr6:10163921-10163744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr6:21175581-21175416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
132, 80
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr6:29851615-29851447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
210-379
               

               
Cow position:
               
chr6:16411860-16411680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
210-381
               

               
Cow position:
               
chr6:62224668-62224489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
210-382
               

               
Cow position:
               
chr6:14150134-14150313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
210-391
               

               
Cow position:
               
chr6:18440231-18440420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
210-391
               

               
Cow position:
               
chr6:30983762-30983577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
210-391
               

               
Cow position:
               
chr6:49686067-49685876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
84, 176
               

               
Conread position:
               
210-394
               

               
Cow position:
               
chr6:54679779-54679582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
210-403
               

               
Cow position:
               
chr6:27636561-27636362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
210-403
               

               
Cow position:
               
chr6:55518123-55517923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
210-407
               

               
Cow position:
               
chr6:11867030-11867238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
210-408
               

               
Cow position:
               
chr6:144998-144799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 158
               

               
Conread position:
               
210-409
               

               
Cow position:
               
chr6:20076044-20075835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
210-410
               

               
Cow position:
               
chr6:56061910-56061701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
210-410
               

               
Cow position:
               
chr6:62724805-62724596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-411
               

               
Cow position:
               
chr6:53267516-53267298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
210-417
               

               
Cow position:
               
chr6:15587345-15587561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
210-418
               

               
Cow position:
               
chr6:12761528-12761312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
210-418
               

               
Cow position:
               
chr6:22876681-22876898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 189
               

               
Conread position:
               
210-418
               

               
Cow position:
               
chr6:62707476-62707694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
88, 194
               

               
Conread position:
               
210-420
               

               
Cow position:
               
chr6:26006013-26005794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr6:14056221-14056443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr6:62079165-62078949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
210-425
               

               
Cow position:
               
chr6:55054286-55054062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 199
               

               
Conread position:
               
210-425
               

               
Cow position:
               
chr6:56022305-56022531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 202
               

               
Conread position:
               
210-433
               

               
Cow position:
               
chr6:47647987-47648218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 192
               

               
Conread position:
               
210-434
               

               
Cow position:
               
chr6:28852223-28851990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 189
               

               
Conread position:
               
210-434
               

               
Cow position:
               
chr6:66259984-66259747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 198
               

               
Conread position:
               
210-435
               

               
Cow position:
               
chr6:24183309-24183544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 193
               

               
Conread position:
               
210-435
               

               
Cow position:
               
chr6:66947573-66947802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 190
               

               
Conread position:
               
210-436
               

               
Cow position:
               
chr6:6227488-6227723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-438
               

               
Cow position:
               
chr6:6229933-6229714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
210-438
               

               
Cow position:
               
chr6:42483663-42483428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
9, 108
               

               
Conread position:
               
210-440
               

               
Cow position:
               
chr6:26155392-26155159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
210-440
               

               
Cow position:
               
chr6:34560751-34560993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 194
               

               
Conread position:
               
210-441
               

               
Cow position:
               
chr6:51666088-51666328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 180
               

               
Conread position:
               
210-442
               

               
Cow position:
               
chr6:48436077-48435844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
210-442
               

               
Cow position:
               
chr6:54127574-54127804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 88
               

               
Conread position:
               
210-444
               

               
Cow position:
               
chr6:4144889-4144648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
210-445
               

               
Cow position:
               
chr6:55548287-55548528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
210-446
               

               
Cow position:
               
chr6:68644240-68643993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 194
               

               
Conread position:
               
210-447
               

               
Cow position:
               
chr6:35171861-35171609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 208
               

               
Conread position:
               
210-466
               

               
Cow position:
               
chr6:37827701-37827968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
210-472
               

               
Cow position:
               
chr6:64428947-64429214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
210-475
               

               
Cow position:
               
chr6:50863194-50862920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 195
               

               
Conread position:
               
210-476
               

               
Cow position:
               
chr6:47540593-47540868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 248
               

               
Conread position:
               
210-477
               

               
Cow position:
               
chr6:53546276-53546013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
210-478
               

               
Cow position:
               
chr6:12965101-12964829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
210-483
               

               
Cow position:
               
chr6:47779125-47778845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 193
               

               
Conread position:
               
210-488
               

               
Cow position:
               
chr6:67728625-67728337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-494
               

               
Cow position:
               
chr6:44623835-44623568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
210-501
               

               
Cow position:
               
chr6:93952-94236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
210-501
               

               
Cow position:
               
chr6:3351275-3350973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
210-509
               

               
Cow position:
               
chr6:62929745-62929441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-518
               

               
Cow position:
               
chr6:5844921-5845235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 197
               

               
Conread position:
               
210-524
               

               
Cow position:
               
chr6:32044096-32043783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
210-535
               

               
Cow position:
               
chr6:24536279-24536621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 196
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr6:17705081-17704741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
84, 193
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr6:24110531-24110206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 183
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr6:54207885-54208218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
85, 197
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr6:55209807-55209478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 177
               

               
Conread position:
               
210-538
               

               
Cow position:
               
chr6:22985615-22985941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
210-581
               

               
Cow position:
               
chr6:1370983-1371356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
210-586
               

               
Cow position:
               
chr6:17313985-17313600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 193
               

               
Conread position:
               
210-586
               

               
Cow position:
               
chr6:21399507-21399887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
210-586
               

               
Cow position:
               
chr6:48010278-48010655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
210-586
               

               
Cow position:
               
chr6:67574635-67574277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
210-589
               

               
Cow position:
               
chr6:30122920-30123330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 261
               

               
Conread position:
               
210-623
               

               
Cow position:
               
chr6:14152644-14153067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
210-629
               

               
Cow position:
               
chr6:60784118-60783706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 194
               

               
Conread position:
               
210-635
               

               
Cow position:
               
chr6:27888590-27888180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
210-638
               

               
Cow position:
               
chr6:65264304-65264708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
210-646
               

               
Cow position:
               
chr6:32517643-32518054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
127, 70
               

               
Conread position:
               
210-651
               

               
Cow position:
               
chr6:37246192-37246616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 146
               

               
Conread position:
               
210-663
               

               
Cow position:
               
chr6:48187327-48187779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
210-665
               

               
Cow position:
               
chr6:59620903-59620469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 193
               

               
Conread position:
               
210-667
               

               
Cow position:
               
chr6:7539820-7539371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 190
               

               
Conread position:
               
210-667
               

               
Cow position:
               
chr6:16746593-16746138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 197
               

               
Conread position:
               
210-667
               

               
Cow position:
               
chr6:31261249-31260785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
210-672
               

               
Cow position:
               
chr6:24222930-24223368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
210-697
               

               
Cow position:
               
chr6:60859051-60859542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 227
               

               
Conread position:
               
210-698
               

               
Cow position:
               
chr6:64432179-64431702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
210-710
               

               
Cow position:
               
chr6:18988438-18987968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 60
               

               
Conread position:
               
210-710
               

               
Cow position:
               
chr6:67187925-67187446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
210-712
               

               
Cow position:
               
chr6:50747251-50746726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:1769947-1770447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 198
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:9008380-9008859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
389, 11
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:10176052-10176550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 198
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:10613077-10612610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 74
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:16617430-16616951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:18447267-18447760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 174
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:35181007-35181505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:40032426-40031942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 53
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:53178873-53178388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr6:61514951-61515449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
210-714
               

               
Cow position:
               
chr6:47151065-47150526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 385
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr6:3978394-3978917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr6:33302643-33302154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr6:48282242-48281739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 197
               

               
Conread position:
               
210-795
               

               
Cow position:
               
chr6:4469013-4468400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 192
               

               
Conread position:
               
211-310
               

               
Cow position:
               
chr6:37603911-37603811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
211-335
               

               
Cow position:
               
chr6:66058463-66058587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-338
               

               
Cow position:
               
chr6:30881080-30881211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
211-367
               

               
Cow position:
               
chr6:54840254-54840426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
211-367
               

               
Cow position:
               
chr6:59101072-59101240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chr6:55061116-55060934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
211-387
               

               
Cow position:
               
chr6:43906434-43906622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
211-394
               

               
Cow position:
               
chr6:45159809-45160003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
211-402
               

               
Cow position:
               
chr6:68246585-68246787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
211-407
               

               
Cow position:
               
chr6:44541050-44540850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
125, 91
               

               
Conread position:
               
211-408
               

               
Cow position:
               
chr6:18776493-18776289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
211-408
               

               
Cow position:
               
chr6:53765647-53765852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
211-418
               

               
Cow position:
               
chr6:55721852-55721653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
211-418
               

               
Cow position:
               
chr6:64380683-64380468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
211-420
               

               
Cow position:
               
chr6:16091143-16090934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 183
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chr6:42728892-42728672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
211-434
               

               
Cow position:
               
chr6:60778015-60777778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
211-440
               

               
Cow position:
               
chr6:1475583-1475356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
211-440
               

               
Cow position:
               
chr6:18139249-18139482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
211-446
               

               
Cow position:
               
chr6:24901909-24902151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 190
               

               
Conread position:
               
211-446
               

               
Cow position:
               
chr6:44960974-44961221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 198
               

               
Conread position:
               
211-458
               

               
Cow position:
               
chr6:47246026-47245778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
211-516
               

               
Cow position:
               
chr6:68376071-68376386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
211-520
               

               
Cow position:
               
chr6:66590318-66590014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
211-522
               

               
Cow position:
               
chr6:6724756-6724436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 174
               

               
Conread position:
               
211-527
               

               
Cow position:
               
chr6:14913988-14914313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
211-534
               

               
Cow position:
               
chr6:13565332-13565006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
211-581
               

               
Cow position:
               
chr6:120481-120114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
211-586
               

               
Cow position:
               
chr6:38640477-38640097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
211-665
               

               
Cow position:
               
chr6:15300594-15301017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 92
               

               
Conread position:
               
211-689
               

               
Cow position:
               
chr6:17090826-17090371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
388, 19
               

               
Conread position:
               
211-689
               

               
Cow position:
               
chr6:31564106-31564561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
211-692
               

               
Cow position:
               
chr6:52478165-52478658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 189
               

               
Conread position:
               
211-704
               

               
Cow position:
               
chr6:8804297-8804770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
211-710
               

               
Cow position:
               
chr6:4864328-4864787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
470, 19
               

               
Conread position:
               
211-710
               

               
Cow position:
               
chr6:28148509-28148002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
211-711
               

               
Cow position:
               
chr6:46558298-46557808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
211-712
               

               
Cow position:
               
chr6:54431083-54430567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 196
               

               
Conread position:
               
211-713
               

               
Cow position:
               
chr6:27851465-27851956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
211-713
               

               
Cow position:
               
chr6:66362986-66363496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 196
               

               
Conread position:
               
211-718
               

               
Cow position:
               
chr6:60474381-60473878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 194
               

               
Conread position:
               
211-785
               

               
Cow position:
               
chr6:61631363-61631963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
212-335
               

               
Cow position:
               
chr6:30688267-30688391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
212-338
               

               
Cow position:
               
chr6:65831608-65831478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
212-370
               

               
Cow position:
               
chr6:16627973-16627813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
212-388
               

               
Cow position:
               
chr6:53811831-53811643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
212-391
               

               
Cow position:
               
chr6:40833775-40833951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
212-398
               

               
Cow position:
               
chr6:58697384-58697580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
75, 194
               

               
Conread position:
               
212-409
               

               
Cow position:
               
chr6:62805889-62805682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
212-418
               

               
Cow position:
               
chr6:21183978-21184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 188
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr6:1090828-1090607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 191
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr6:36643242-36643465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
212-440
               

               
Cow position:
               
chr6:42035015-42034783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 159
               

               
Conread position:
               
212-457
               

               
Cow position:
               
chr6:47783113-47782855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 195
               

               
Conread position:
               
212-470
               

               
Cow position:
               
chr6:20219534-20219794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
212-474
               

               
Cow position:
               
chr6:42567741-42567472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 193
               

               
Conread position:
               
212-476
               

               
Cow position:
               
chr6:48097360-48097623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
212-478
               

               
Cow position:
               
chr6:47884800-47885045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
212-498
               

               
Cow position:
               
chr6:67451129-67451415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
212-499
               

               
Cow position:
               
chr6:47959049-47958768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
212-500
               

               
Cow position:
               
chr6:51538826-51539128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
212-513
               

               
Cow position:
               
chr6:18144446-18144135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 252
               

               
Conread position:
               
212-519
               

               
Cow position:
               
chr6:8161440-8161756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 250
               

               
Conread position:
               
212-519
               

               
Cow position:
               
chr6:60468474-60468173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
212-533
               

               
Cow position:
               
chr6:17548723-17549059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 99
               

               
Conread position:
               
212-601
               

               
Cow position:
               
chr6:9219507-9219123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
212-619
               

               
Cow position:
               
chr6:19446498-19446106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
212-627
               

               
Cow position:
               
chr6:60850135-60850552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
212-662
               

               
Cow position:
               
chr6:9750802-9751237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
212-688
               

               
Cow position:
               
chr6:24468156-24468619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
212-689
               

               
Cow position:
               
chr6:38441425-38440954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 197
               

               
Conread position:
               
212-689
               

               
Cow position:
               
chr6:45064791-45065234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
415, 11
               

               
Conread position:
               
212-702
               

               
Cow position:
               
chr6:61114010-61113509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
212-711
               

               
Cow position:
               
chr6:21004924-21004406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
212-713
               

               
Cow position:
               
chr6:48567115-48567594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 34
               

               
Conread position:
               
212-714
               

               
Cow position:
               
chr6:23696237-23695745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
212-718
               

               
Cow position:
               
chr6:13367527-13367044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
212-718
               

               
Cow position:
               
chr6:39358098-39358595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 88
               

               
Conread position:
               
212-719
               

               
Cow position:
               
chr6:29210720-29210245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
458, 9
               

               
Conread position:
               
212-797
               

               
Cow position:
               
chr6:6201678-6201116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 197
               

               
Conread position:
               
213-329
               

               
Cow position:
               
chr6:16738859-16738739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
213-331
               

               
Cow position:
               
chr6:63762336-63762456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
213-338
               

               
Cow position:
               
chr6:67810743-67810867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
213-340
               

               
Cow position:
               
chr6:54828076-54828207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
213-388
               

               
Cow position:
               
chr6:63020586-63020403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
213-391
               

               
Cow position:
               
chr6:28561924-28562111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
213-409
               

               
Cow position:
               
chr6:6614869-6614662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
91, 187
               

               
Conread position:
               
213-410
               

               
Cow position:
               
chr6:45920976-45921173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
213-410
               

               
Cow position:
               
chr6:59015335-59015529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chr6:57072667-57072460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
213-438
               

               
Cow position:
               
chr6:30501880-30502111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 180
               

               
Conread position:
               
213-442
               

               
Cow position:
               
chr6:51543146-51542901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
213-442
               

               
Cow position:
               
chr6:55405158-55404915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
213-446
               

               
Cow position:
               
chr6:16380792-16380548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
33, 191
               

               
Conread position:
               
213-464
               

               
Cow position:
               
chr6:21715293-21715032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
213-478
               

               
Cow position:
               
chr6:41655811-41656067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
213-504
               

               
Cow position:
               
chr6:53145436-53145732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 193
               

               
Conread position:
               
213-512
               

               
Cow position:
               
chr6:7628213-7627905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
213-523
               

               
Cow position:
               
chr6:14166448-14166768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
213-524
               

               
Cow position:
               
chr6:581496-581813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 196
               

               
Conread position:
               
213-527
               

               
Cow position:
               
chr6:55030578-55030243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
82, 228
               

               
Conread position:
               
213-532
               

               
Cow position:
               
chr6:22850008-22850321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 185
               

               
Conread position:
               
213-532
               

               
Cow position:
               
chr6:51526735-51526415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
213-533
               

               
Cow position:
               
chr6:37463250-37462944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
213-562
               

               
Cow position:
               
chr6:43134697-43135044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
213-590
               

               
Cow position:
               
chr6:59798893-59798529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
213-606
               

               
Cow position:
               
chr6:3596038-3595638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
82, 196
               

               
Conread position:
               
213-628
               

               
Cow position:
               
chr6:26450543-26450154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
333, 28
               

               
Conread position:
               
213-630
               

               
Cow position:
               
chr6:31847000-31847385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 77
               

               
Conread position:
               
213-645
               

               
Cow position:
               
chr6:44566670-44566232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
213-648
               

               
Cow position:
               
chr6:12669342-12668921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 108
               

               
Conread position:
               
213-664
               

               
Cow position:
               
chr6:57404892-57405323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 113
               

               
Conread position:
               
213-678
               

               
Cow position:
               
chr6:8966332-8965873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
213-685
               

               
Cow position:
               
chr6:6063048-6063503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 185
               

               
Conread position:
               
213-689
               

               
Cow position:
               
chr6:14949247-14949709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
213-689
               

               
Cow position:
               
chr6:36203065-36202600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
90, 165
               

               
Conread position:
               
213-708
               

               
Cow position:
               
chr6:12928384-12927873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 96
               

               
Conread position:
               
213-713
               

               
Cow position:
               
chr6:36470334-36470817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
213-713
               

               
Cow position:
               
chr6:44078759-44078264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 170
               

               
Conread position:
               
213-713
               

               
Cow position:
               
chr6:52430775-52431284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 245
               

               
Conread position:
               
213-718
               

               
Cow position:
               
chr6:35471269-35471782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
213-791
               

               
Cow position:
               
chr6:61269561-61268979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 113
               

               
Conread position:
               
213-795
               

               
Cow position:
               
chr6:17997073-17997645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 186
               

               
Conread position:
               
214-383
               

               
Cow position:
               
chr6:48278651-48278823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
214-389
               

               
Cow position:
               
chr6:6996655-6996839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
214-391
               

               
Cow position:
               
chr6:15266124-15266295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
109, 73
               

               
Conread position:
               
214-406
               

               
Cow position:
               
chr6:38550384-38550585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
214-422
               

               
Cow position:
               
chr6:40879034-40878806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 200
               

               
Conread position:
               
214-649
               

               
Cow position:
               
chr6:1704037-1703630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
214-669
               

               
Cow position:
               
chr6:23532889-23532459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 46
               

               
Conread position:
               
214-673
               

               
Cow position:
               
chr6:20157578-20157117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 195
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr6:35415275-35415740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
214-698
               

               
Cow position:
               
chr6:34251055-34251512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 66
               

               
Conread position:
               
215-340
               

               
Cow position:
               
chr6:4048909-4049037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
215-388
               

               
Cow position:
               
chr6:34423218-34423398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
215-409
               

               
Cow position:
               
chr6:40030140-40029938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 187
               

               
Conread position:
               
215-424
               

               
Cow position:
               
chr6:1866973-1866759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
215-438
               

               
Cow position:
               
chr6:22204782-22205014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 188
               

               
Conread position:
               
215-440
               

               
Cow position:
               
chr6:29775860-29775633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
83, 130
               

               
Conread position:
               
215-440
               

               
Cow position:
               
chr6:66839435-66839209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
117, 166
               

               
Conread position:
               
215-441
               

               
Cow position:
               
chr6:37692994-37692761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
215-446
               

               
Cow position:
               
chr6:6227250-6227011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
215-458
               

               
Cow position:
               
chr6:21475967-21475720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
215-461
               

               
Cow position:
               
chr6:68046924-68047158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr6:10039969-10039643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 190
               

               
Conread position:
               
215-586
               

               
Cow position:
               
chr6:21235289-21234910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
215-628
               

               
Cow position:
               
chr6:15243503-15243088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
215-639
               

               
Cow position:
               
chr6:60819757-60819341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 192
               

               
Conread position:
               
215-640
               

               
Cow position:
               
chr6:11247011-11246590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 108
               

               
Conread position:
               
215-666
               

               
Cow position:
               
chr6:57545987-57546433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
215-702
               

               
Cow position:
               
chr6:7102997-7103476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 191
               

               
Conread position:
               
215-713
               

               
Cow position:
               
chr6:2607850-2607362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 233
               

               
Conread position:
               
215-713
               

               
Cow position:
               
chr6:10331856-10332358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 192
               

               
Conread position:
               
215-796
               

               
Cow position:
               
chr6:38771515-38770944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
215-797
               

               
Cow position:
               
chr6:16700496-16699909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 126
               

               
Conread position:
               
216-335
               

               
Cow position:
               
chr6:60674072-60673955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
216-340
               

               
Cow position:
               
chr6:6547273-6547392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
216-340
               

               
Cow position:
               
chr6:54141062-54140942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
216-353
               

               
Cow position:
               
chr6:23173289-23173154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
216-379
               

               
Cow position:
               
chr6:5820019-5820177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
216-391
               

               
Cow position:
               
chr6:50682058-50682240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
216-394
               

               
Cow position:
               
chr6:57467840-57467651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
216-399
               

               
Cow position:
               
chr6:12631734-12631550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
216-405
               

               
Cow position:
               
chr6:26408261-26408461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
75, 194
               

               
Conread position:
               
216-452
               

               
Cow position:
               
chr6:43787667-43787912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 187
               

               
Conread position:
               
216-476
               

               
Cow position:
               
chr6:19259117-19259366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
216-476
               

               
Cow position:
               
chr6:21293257-21293518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
216-508
               

               
Cow position:
               
chr6:59438219-59438501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
216-514
               

               
Cow position:
               
chr6:23024857-23025172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
216-524
               

               
Cow position:
               
chr6:18117808-18118121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
19, 168
               

               
Conread position:
               
216-527
               

               
Cow position:
               
chr6:59719052-59718724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 183
               

               
Conread position:
               
216-543
               

               
Cow position:
               
chr6:16287826-16288139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
216-658
               

               
Cow position:
               
chr6:21061650-21062076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
216-686
               

               
Cow position:
               
chr6:16102950-16103427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 173
               

               
Conread position:
               
216-689
               

               
Cow position:
               
chr6:37149423-37148969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
216-689
               

               
Cow position:
               
chr6:66434196-66433720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 167
               

               
Conread position:
               
216-708
               

               
Cow position:
               
chr6:56850258-56849771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 97
               

               
Conread position:
               
216-713
               

               
Cow position:
               
chr6:6060333-6060809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
216-713
               

               
Cow position:
               
chr6:32126293-32125815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
216-714
               

               
Cow position:
               
chr6:8600246-8599746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
216-718
               

               
Cow position:
               
chr6:2547502-2546987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 193
               

               
Conread position:
               
216-718
               

               
Cow position:
               
chr6:35989997-35990477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
216-718
               

               
Cow position:
               
chr6:65871272-65870768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
217-335
               

               
Cow position:
               
chr6:47989666-47989546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
217-340
               

               
Cow position:
               
chr6:41147459-41147335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
217-340
               

               
Cow position:
               
chr6:57935336-57935458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
217-388
               

               
Cow position:
               
chr6:55919692-55919874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
217-394
               

               
Cow position:
               
chr6:19052859-19052671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
217-403
               

               
Cow position:
               
chr6:44543906-44544102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
6, 92
               

               
Conread position:
               
217-408
               

               
Cow position:
               
chr6:8369664-8369465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 163
               

               
Conread position:
               
217-408
               

               
Cow position:
               
chr6:19563239-19563441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 188
               

               
Conread position:
               
217-422
               

               
Cow position:
               
chr6:36225350-36225138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
77, 185
               

               
Conread position:
               
217-434
               

               
Cow position:
               
chr6:55296852-55297078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
78, 189
               

               
Conread position:
               
217-439
               

               
Cow position:
               
chr6:19225152-19225362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
217-504
               

               
Cow position:
               
chr6:51294504-51294234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
217-525
               

               
Cow position:
               
chr6:33206969-33206671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
124, 80
               

               
Conread position:
               
217-667
               

               
Cow position:
               
chr6:62325232-62324788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
217-713
               

               
Cow position:
               
chr6:36652639-36652176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
217-797
               

               
Cow position:
               
chr6:47575131-47574567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 58
               

               
Conread position:
               
218-315
               

               
Cow position:
               
chr6:36592402-36592305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
218-391
               

               
Cow position:
               
chr6:3937026-3936840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 170
               

               
Conread position:
               
218-394
               

               
Cow position:
               
chr6:35984895-35985082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
218-399
               

               
Cow position:
               
chr6:36939113-36938916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
218-408
               

               
Cow position:
               
chr6:13742226-13742031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 95
               

               
Conread position:
               
218-411
               

               
Cow position:
               
chr6:69374595-69374793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 181
               

               
Conread position:
               
218-429
               

               
Cow position:
               
chr6:50883440-50883656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
218-432
               

               
Cow position:
               
chr6:28088807-28089029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
5, 66
               

               
Conread position:
               
218-437
               

               
Cow position:
               
chr6:30024116-30023899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
218-440
               

               
Cow position:
               
chr6:21470193-21470418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
218-475
               

               
Cow position:
               
chr6:67451425-67451667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
218-476
               

               
Cow position:
               
chr6:56394012-56393751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
218-492
               

               
Cow position:
               
chr6:62056850-62056574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
218-500
               

               
Cow position:
               
chr6:28972793-28973080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 190
               

               
Conread position:
               
218-506
               

               
Cow position:
               
chr6:50504695-50504401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
66, 182
               

               
Conread position:
               
218-507
               

               
Cow position:
               
chr6:60143960-60144251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
116, 173
               

               
Conread position:
               
218-527
               

               
Cow position:
               
chr6:17068416-17068721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
218-576
               

               
Cow position:
               
chr6:50467378-50467011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
5, 190
               

               
Conread position:
               
218-583
               

               
Cow position:
               
chr6:7128165-7128531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
218-702
               

               
Cow position:
               
chr6:9736406-9736880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
53, 126
               

               
Conread position:
               
218-718
               

               
Cow position:
               
chr6:32866982-32867462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 54
               

               
Conread position:
               
219-389
               

               
Cow position:
               
chr6:54821072-54820891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
219-391
               

               
Cow position:
               
chr6:55015121-55014936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
219-405
               

               
Cow position:
               
chr6:8186949-8187144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 183
               

               
Conread position:
               
219-440
               

               
Cow position:
               
chr6:57079664-57079434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
70, 184
               

               
Conread position:
               
219-441
               

               
Cow position:
               
chr6:58725605-58725380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
115, 101
               

               
Conread position:
               
219-543
               

               
Cow position:
               
chr6:18608572-18608905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 189
               

               
Conread position:
               
219-562
               

               
Cow position:
               
chr6:36645612-36645288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
219-590
               

               
Cow position:
               
chr6:4559065-4559442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 175
               

               
Conread position:
               
219-606
               

               
Cow position:
               
chr6:38610212-38609815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 192
               

               
Conread position:
               
219-692
               

               
Cow position:
               
chr6:34475320-34475774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
219-718
               

               
Cow position:
               
chr6:3952759-3952269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 189
               

               
Conread position:
               
220-663
               

               
Cow position:
               
chr6:46865348-46865791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
221-430
               

               
Cow position:
               
chr6:6117412-6117606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
221-439
               

               
Cow position:
               
chr6:23453879-23453665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 97
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chr6:2899348-2899589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
221-619
               

               
Cow position:
               
chr6:19754843-19755231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
221-667
               

               
Cow position:
               
chr6:66131555-66131106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 187
               

               
Conread position:
               
221-686
               

               
Cow position:
               
chr6:65903390-65903841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
221-709
               

               
Cow position:
               
chr6:24781315-24781811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 170
               

               
Conread position:
               
221-718
               

               
Cow position:
               
chr6:24031599-24031119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 102
               

               
Conread position:
               
222-340
               

               
Cow position:
               
chr6:26764587-26764712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
222-383
               

               
Cow position:
               
chr6:5445903-5445733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 91
               

               
Conread position:
               
222-391
               

               
Cow position:
               
chr6:34721876-34722047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
222-408
               

               
Cow position:
               
chr6:46206526-46206340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
222-434
               

               
Cow position:
               
chr6:45094813-45094583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
222-441
               

               
Cow position:
               
chr6:56799656-56799889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
222-441
               

               
Cow position:
               
chr6:61110017-61109797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
115, 76
               

               
Conread position:
               
222-478
               

               
Cow position:
               
chr6:57089439-57089173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 234
               

               
Conread position:
               
222-596
               

               
Cow position:
               
chr6:19996850-19996475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 182
               

               
Conread position:
               
222-640
               

               
Cow position:
               
chr6:59104839-59104433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
222-689
               

               
Cow position:
               
chr6:19402080-19401634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 68
               

               
Conread position:
               
222-692
               

               
Cow position:
               
chr6:29240167-29239712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 75
               

               
Conread position:
               
223-326
               

               
Cow position:
               
chr6:36267234-36267126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
223-499
               

               
Cow position:
               
chr6:61883939-61884206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
223-533
               

               
Cow position:
               
chr6:44867312-44867617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
223-698
               

               
Cow position:
               
chr6:5302168-5302639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
64, 171
               

               
Conread position:
               
224-441
               

               
Cow position:
               
chr6:41169300-41169526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
86, 183
               

               
Conread position:
               
227-713
               

               
Cow position:
               
chr6:24004750-24004295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
228-340
               

               
Cow position:
               
chr6:33347223-33347113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
228-438
               

               
Cow position:
               
chr6:9832426-9832219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
229-389
               

               
Cow position:
               
chr6:14471593-14471422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
229-437
               

               
Cow position:
               
chr6:65534940-65535157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
69, 174
               

               
Conread position:
               
229-709
               

               
Cow position:
               
chr6:54133039-54132571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
230-374
               

               
Cow position:
               
chr6:8726904-8726752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
230-389
               

               
Cow position:
               
chr6:34380589-34380755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 66
               

               
Conread position:
               
230-391
               

               
Cow position:
               
chr6:26054673-26054847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr6:61644629-61644802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
230-405
               

               
Cow position:
               
chr6:47022786-47022606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 169
               

               
Conread position:
               
230-424
               

               
Cow position:
               
chr6:62811778-62811577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 174
               

               
Conread position:
               
230-439
               

               
Cow position:
               
chr6:1941607-1941820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
230-440
               

               
Cow position:
               
chr6:61557059-61556838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 175
               

               
Conread position:
               
230-457
               

               
Cow position:
               
chr6:8731646-8731400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 239
               

               
Conread position:
               
230-467
               

               
Cow position:
               
chr6:48379384-48379628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
68, 174
               

               
Conread position:
               
230-468
               

               
Cow position:
               
chr6:27219393-27219165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
104, 146
               

               
Conread position:
               
230-468
               

               
Cow position:
               
chr6:32453616-32453373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
26, 174
               

               
Conread position:
               
230-507
               

               
Cow position:
               
chr6:60121369-60121654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
230-508
               

               
Cow position:
               
chr6:56986421-56986699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
62, 162
               

               
Conread position:
               
230-523
               

               
Cow position:
               
chr6:9302496-9302784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 68
               

               
Conread position:
               
230-534
               

               
Cow position:
               
chr6:17794528-17794834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
230-534
               

               
Cow position:
               
chr6:22525552-22525253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
230-578
               

               
Cow position:
               
chr6:67617720-67618081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
230-586
               

               
Cow position:
               
chr6:16262008-16261652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
65, 176
               

               
Conread position:
               
230-636
               

               
Cow position:
               
chr6:15446966-15447379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 180
               

               
Conread position:
               
230-665
               

               
Cow position:
               
chr6:58732073-58732513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
65, 165
               

               
Conread position:
               
230-666
               

               
Cow position:
               
chr6:21231739-21231335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
369, 79
               

               
Conread position:
               
230-667
               

               
Cow position:
               
chr6:10105756-10106198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
230-683
               

               
Cow position:
               
chr6:38207259-38207717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
230-684
               

               
Cow position:
               
chr6:41733862-41733404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 161
               

               
Conread position:
               
230-686
               

               
Cow position:
               
chr6:67951184-67950734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
230-698
               

               
Cow position:
               
chr6:6264879-6264407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
230-698
               

               
Cow position:
               
chr6:15305798-15305349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 155
               

               
Conread position:
               
230-701
               

               
Cow position:
               
chr6:41375997-41375513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 152
               

               
Conread position:
               
230-706
               

               
Cow position:
               
chr6:38853429-38853903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 165
               

               
Conread position:
               
230-709
               

               
Cow position:
               
chr6:34195935-34196396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
230-713
               

               
Cow position:
               
chr6:39093972-39093511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
230-713
               

               
Cow position:
               
chr6:63047803-63047324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 58
               

               
Conread position:
               
230-718
               

               
Cow position:
               
chr6:49398402-49398872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 106
               

               
Conread position:
               
230-773
               

               
Cow position:
               
chr6:32268660-32269188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 155
               

               
Conread position:
               
231-325
               

               
Cow position:
               
chr6:11894778-11894876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
231-502
               

               
Cow position:
               
chr6:2585167-2584894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 168
               

               
Conread position:
               
231-515
               

               
Cow position:
               
chr6:68816396-68816107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
231-531
               

               
Cow position:
               
chr6:37395177-37395483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 67
               

               
Conread position:
               
231-586
               

               
Cow position:
               
chr6:45388547-45388196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
231-586
               

               
Cow position:
               
chr6:52901443-52901110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
231-647
               

               
Cow position:
               
chr6:5113821-5114228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
71, 155
               

               
Conread position:
               
231-688
               

               
Cow position:
               
chr6:44194330-44194772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 18
               

               
Conread position:
               
231-690
               

               
Cow position:
               
chr6:46859944-46860397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
231-713
               

               
Cow position:
               
chr6:12338216-12337733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
231-713
               

               
Cow position:
               
chr6:21587208-21587673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
232-436
               

               
Cow position:
               
chr6:12623734-12623530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
232-468
               

               
Cow position:
               
chr6:12912265-12912024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
232-468
               

               
Cow position:
               
chr6:12914697-12914456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
232-484
               

               
Cow position:
               
chr6:61681303-61681044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 80
               

               
Conread position:
               
232-663
               

               
Cow position:
               
chr6:12091761-12092182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 179
               

               
Conread position:
               
232-678
               

               
Cow position:
               
chr6:45690393-45690810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
232-688
               

               
Cow position:
               
chr6:4383699-4383266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 57
               

               
Conread position:
               
232-710
               

               
Cow position:
               
chr6:46292130-46292578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
82, 166
               

               
Conread position:
               
232-712
               

               
Cow position:
               
chr6:51835623-51835149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
232-713
               

               
Cow position:
               
chr6:54365104-54365575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 171
               

               
Conread position:
               
232-713
               

               
Cow position:
               
chr6:54647274-54647775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
232-797
               

               
Cow position:
               
chr6:29485308-29484750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 169
               

               
Conread position:
               
233-658
               

               
Cow position:
               
chr6:53519393-53519816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
13, 181
               

               
Conread position:
               
234-402
               

               
Cow position:
               
chr6:17173051-17172873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
234-411
               

               
Cow position:
               
chr6:15058598-15058416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 165
               

               
Conread position:
               
234-440
               

               
Cow position:
               
chr6:33450754-33450959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
94, 147
               

               
Conread position:
               
234-532
               

               
Cow position:
               
chr6:61523981-61524278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 167
               

               
Conread position:
               
234-669
               

               
Cow position:
               
chr6:19696032-19695603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 159
               

               
Conread position:
               
235-420
               

               
Cow position:
               
chr6:57295954-57295760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 168
               

               
Conread position:
               
235-432
               

               
Cow position:
               
chr6:39415047-39414839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
235-439
               

               
Cow position:
               
chr6:1870975-1871186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 167
               

               
Conread position:
               
235-478
               

               
Cow position:
               
chr6:57287449-57287683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
235-531
               

               
Cow position:
               
chr6:55205085-55205388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 173
               

               
Conread position:
               
235-583
               

               
Cow position:
               
chr6:60740232-60739884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
236-713
               

               
Cow position:
               
chr6:28483238-28482763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
237-458
               

               
Cow position:
               
chr6:10466310-10466088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
237-538
               

               
Cow position:
               
chr6:9718697-9719002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
237-617
               

               
Cow position:
               
chr6:4691745-4692136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 178
               

               
Conread position:
               
238-443
               

               
Cow position:
               
chr6:58459936-58459729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 34
               

               
Conread position:
               
238-654
               

               
Cow position:
               
chr6:52413081-52412665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 170
               

               
Conread position:
               
238-713
               

               
Cow position:
               
chr6:35842879-35842409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 85
               

               
Conread position:
               
240-709
               

               
Cow position:
               
chr6:21736685-21737125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
240-792
               

               
Cow position:
               
chr6:445545-444970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
241-441
               

               
Cow position:
               
chr6:68365035-68364844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
241-640
               

               
Cow position:
               
chr6:8125545-8125157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 162
               

               
Conread position:
               
241-667
               

               
Cow position:
               
chr6:38641710-38641296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 140
               

               
Conread position:
               
243-586
               

               
Cow position:
               
chr6:47832898-47833248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 166
               

               
Conread position:
               
244-530
               

               
Cow position:
               
chr6:46462168-46462473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
244-711
               

               
Cow position:
               
chr6:26915541-26915080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 139
               

               
Conread position:
               
245-541
               

               
Cow position:
               
chr6:17954035-17954335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
47, 213
               

               
Conread position:
               
246-523
               

               
Cow position:
               
chr6:67643478-67643759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 156
               

               
Conread position:
               
248-412
               

               
Cow position:
               
chr6:30895781-30895954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 164
               

               
Conread position:
               
248-693
               

               
Cow position:
               
chr6:50984434-50983976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
248-705
               

               
Cow position:
               
chr6:40774125-40774591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
251-441
               

               
Cow position:
               
chr6:10488074-10488260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
251-451
               

               
Cow position:
               
chr6:69153618-69153412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 152
               

               
Conread position:
               
252-437
               

               
Cow position:
               
chr6:31865300-31865112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
252-459
               

               
Cow position:
               
chr6:21467060-21467275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
43, 141
               

               
Conread position:
               
252-682
               

               
Cow position:
               
chr6:37783604-37783194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
254-531
               

               
Cow position:
               
chr6:36189903-36189623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
254-535
               

               
Cow position:
               
chr6:21514403-21514693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
254-661
               

               
Cow position:
               
chr6:16191867-16191471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
255-509
               

               
Cow position:
               
chr6:16352161-16352401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
255-533
               

               
Cow position:
               
chr6:2623969-2623704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
255-533
               

               
Cow position:
               
chr6:6067502-6067769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
255-575
               

               
Cow position:
               
chr6:67323508-67323193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
255-613
               

               
Cow position:
               
chr6:57571680-57571325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 147
               

               
Conread position:
               
256-540
               

               
Cow position:
               
chr6:2153395-2153676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
256-718
               

               
Cow position:
               
chr6:8637478-8637019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
257-635
               

               
Cow position:
               
chr6:17333850-17334227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 143
               

               
Conread position:
               
259-442
               

               
Cow position:
               
chr6:61576012-61575834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
259-477
               

               
Cow position:
               
chr6:55502971-55502743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 152
               

               
Conread position:
               
259-710
               

               
Cow position:
               
chr6:40713311-40713748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 134
               

               
Conread position:
               
262-408
               

               
Cow position:
               
chr6:58076591-58076436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
262-570
               

               
Cow position:
               
chr6:21590900-21590575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
262-797
               

               
Cow position:
               
chr6:46571305-46570764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 149
               

               
Conread position:
               
265-533
               

               
Cow position:
               
chr6:66531630-66531899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
267-510
               

               
Cow position:
               
chr6:68652162-68652408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 137
               

               
Conread position:
               
273-713
               

               
Cow position:
               
chr6:42519171-42518722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
29, 284
               

               
Conread position:
               
275-572
               

               
Cow position:
               
chr6:20196123-20196403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
278-532
               

               
Cow position:
               
chr6:10487761-10487510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
279-631
               

               
Cow position:
               
chr6:47640272-47640603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
291, 20
               

               
Conread position:
               
281-532
               

               
Cow position:
               
chr6:33929370-33929626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
15, 125
               

               
Conread position:
               
283-651
               

               
Cow position:
               
chr6:30974209-30973854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
283-666
               

               
Cow position:
               
chr6:59069449-59069829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
284-478
               

               
Cow position:
               
chr6:55535580-55535772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
284-489
               

               
Cow position:
               
chr6:19131602-19131395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
284-524
               

               
Cow position:
               
chr6:61142391-61142633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
284-525
               

               
Cow position:
               
chr6:23353708-23353483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
284-533
               

               
Cow position:
               
chr6:51969236-51968989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
158, 38
               

               
Conread position:
               
284-583
               

               
Cow position:
               
chr6:16764474-16764773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 169
               

               
Conread position:
               
284-639
               

               
Cow position:
               
chr6:35993755-35993403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 114
               

               
Conread position:
               
284-661
               

               
Cow position:
               
chr6:16423878-16423503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
284-661
               

               
Cow position:
               
chr6:37199366-37199741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
284-667
               

               
Cow position:
               
chr6:7989250-7989615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
284-667
               

               
Cow position:
               
chr6:54864488-54864868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
284-686
               

               
Cow position:
               
chr6:20606129-20605709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
284-686
               

               
Cow position:
               
chr6:51675080-51674693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
284-710
               

               
Cow position:
               
chr6:54867687-54867263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
284-718
               

               
Cow position:
               
chr6:18048854-18049281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
285-406
               

               
Cow position:
               
chr6:19508017-19508145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
285-439
               

               
Cow position:
               
chr6:23611108-23610954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
285-442
               

               
Cow position:
               
chr6:49096283-49096442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
285-525
               

               
Cow position:
               
chr6:36284412-36284172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
285-586
               

               
Cow position:
               
chr6:16316485-16316176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
285-653
               

               
Cow position:
               
chr6:47799464-47799110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 118
               

               
Conread position:
               
285-695
               

               
Cow position:
               
chr6:25407221-25407630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
287-429
               

               
Cow position:
               
chr6:21066714-21066862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
287-665
               

               
Cow position:
               
chr6:6401119-6400748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
287-667
               

               
Cow position:
               
chr6:6098097-6098484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
287-700
               

               
Cow position:
               
chr6:14958179-14958587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
288-664
               

               
Cow position:
               
chr6:63298864-63299222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
289-532
               

               
Cow position:
               
chr6:582106-582349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
289-643
               

               
Cow position:
               
chr6:1499800-1499460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
289-702
               

               
Cow position:
               
chr6:54990834-54991233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
289-713
               

               
Cow position:
               
chr6:35103161-35103576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
289-713
               

               
Cow position:
               
chr6:67214916-67214490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
290-688
               

               
Cow position:
               
chr6:68049584-68049209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
290-714
               

               
Cow position:
               
chr6:11830354-11829913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
291-544
               

               
Cow position:
               
chr6:3592562-3592313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
291-665
               

               
Cow position:
               
chr6:47339191-47339549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
291-665
               

               
Cow position:
               
chr6:67456883-67456503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
292-718
               

               
Cow position:
               
chr6:60057495-60057921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
293-463
               

               
Cow position:
               
chr6:67805852-67806027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
294-563
               

               
Cow position:
               
chr6:58608282-58608548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr6:39138034-39137776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
297-669
               

               
Cow position:
               
chr6:60442566-60442215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
298-559
               

               
Cow position:
               
chr6:12845537-12845282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
298-709
               

               
Cow position:
               
chr6:42961205-42961615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
298-713
               

               
Cow position:
               
chr6:11169861-11169456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
299-533
               

               
Cow position:
               
chr6:54573417-54573166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
299-713
               

               
Cow position:
               
chr6:6343586-6343174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
300-521
               

               
Cow position:
               
chr6:28178799-28179012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
300-718
               

               
Cow position:
               
chr6:19681369-19681772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
300-718
               

               
Cow position:
               
chr6:42565843-42565430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
301-533
               

               
Cow position:
               
chr6:58597350-58597582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
303-641
               

               
Cow position:
               
chr6:19013216-19012893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
303-713
               

               
Cow position:
               
chr6:16707165-16706758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
305-598
               

               
Cow position:
               
chr6:60667561-60667276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
306-686
               

               
Cow position:
               
chr6:8787887-8788257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
306-745
               

               
Cow position:
               
chr6:57164575-57164146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
312-713
               

               
Cow position:
               
chr6:31526190-31525800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
330-713
               

               
Cow position:
               
chr6:54140916-54140566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 58
               

               
Conread position:
               
332-688
               

               
Cow position:
               
chr6:130046-130391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 61
               

               
Conread position:
               
333-583
               

               
Cow position:
               
chr6:377241-377006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 46
               

               
Conread position:
               
333-625
               

               
Cow position:
               
chr6:55763969-55763694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
215, 62
               

               
Conread position:
               
333-627
               

               
Cow position:
               
chr6:12542814-12543095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
266, 64
               

               
Conread position:
               
333-667
               

               
Cow position:
               
chr6:28318513-28318207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
231, 45
               

               
Conread position:
               
333-682
               

               
Cow position:
               
chr6:23247850-23248184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
231, 50
               

               
Conread position:
               
333-684
               

               
Cow position:
               
chr6:49002624-49002947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
335, 48
               

               
Conread position:
               
333-686
               

               
Cow position:
               
chr6:60350176-60350524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 62
               

               
Conread position:
               
333-688
               

               
Cow position:
               
chr6:66874467-66874135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
335, 63
               

               
Conread position:
               
333-699
               

               
Cow position:
               
chr6:27110713-27110352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
333-713
               

               
Cow position:
               
chr6:60673681-60673296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
178, 54
               

               
Conread position:
               
334-583
               

               
Cow position:
               
chr6:3081001-3081261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
334-631
               

               
Cow position:
               
chr6:31854469-31854186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
334-713
               

               
Cow position:
               
chr6:55040099-55040469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
336-523
               

               
Cow position:
               
chr6:54600461-54600278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
336-676
               

               
Cow position:
               
chr6:22502798-22503133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 59
               

               
Conread position:
               
336-683
               

               
Cow position:
               
chr6:38614925-38614602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 39
               

               
Conread position:
               
340-709
               

               
Cow position:
               
chr6:28148945-28148599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
342-589
               

               
Cow position:
               
chr6:20206382-20206137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
196, 57
               

               
Conread position:
               
342-698
               

               
Cow position:
               
chr6:561734-561380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
346-713
               

               
Cow position:
               
chr6:6769383-6769025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
346-718
               

               
Cow position:
               
chr6:52248027-52248393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
349-649
               

               
Cow position:
               
chr6:25008819-25008530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
349-713
               

               
Cow position:
               
chr6:48170038-48169693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 43
               

               
Conread position:
               
349-713
               

               
Cow position:
               
chr6:59597748-59597405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
122, 46
               

               
Conread position:
               
350-536
               

               
Cow position:
               
chr6:28283960-28283788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
351-628
               

               
Cow position:
               
chr6:59109043-59108779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
351-713
               

               
Cow position:
               
chr6:58074146-58073791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 44
               

               
Conread position:
               
352-533
               

               
Cow position:
               
chr6:54364895-54365081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
352-698
               

               
Cow position:
               
chr6:54368807-54369136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
246, 45
               

               
Conread position:
               
352-713
               

               
Cow position:
               
chr6:62924899-62925245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 90
               

               
Conread position:
               
354-701
               

               
Cow position:
               
chr6:31635593-31635927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
331, 17
               

               
Conread position:
               
356-522
               

               
Cow position:
               
chr6:26764925-26765081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
356-797
               

               
Cow position:
               
chr6:24962238-24961805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
174, 82
               

               
Conread position:
               
363-713
               

               
Cow position:
               
chr6:9375295-9375626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
364-718
               

               
Cow position:
               
chr6:44099171-44098832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
365-630
               

               
Cow position:
               
chr6:44984417-44984161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
365-661
               

               
Cow position:
               
chr6:416192-415900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
365-689
               

               
Cow position:
               
chr6:14850630-14850937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 28
               

               
Conread position:
               
366-595
               

               
Cow position:
               
chr6:44127693-44127467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
76, 6
               

               
Conread position:
               
368-685
               

               
Cow position:
               
chr6:7824847-7824539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
180, 30
               

               
Conread position:
               
368-690
               

               
Cow position:
               
chr6:21542404-21542091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
300, 27
               

               
Conread position:
               
372-634
               

               
Cow position:
               
chr6:40761202-40760965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
372-713
               

               
Cow position:
               
chr6:50445691-50446011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
373-562
               

               
Cow position:
               
chr6:46998063-46998246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
373-699
               

               
Cow position:
               
chr6:8318083-8318404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
375-667
               

               
Cow position:
               
chr6:48425250-48425523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
173, 21
               

               
Conread position:
               
375-686
               

               
Cow position:
               
chr6:10695939-10695644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
156, 60
               

               
Conread position:
               
375-713
               

               
Cow position:
               
chr6:18961441-18961774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
376-534
               

               
Cow position:
               
chr6:6673175-6673025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
377-535
               

               
Cow position:
               
chr6:5413894-5413743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
380-535
               

               
Cow position:
               
chr6:54288143-54287994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
381-527
               

               
Cow position:
               
chr6:30688547-30688684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
381-640
               

               
Cow position:
               
chr6:9839240-9838987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
168, 15
               

               
Conread position:
               
381-761
               

               
Cow position:
               
chr6:5445693-5445322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
218, 57
               

               
Conread position:
               
382-713
               

               
Cow position:
               
chr6:34076096-34075775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
382-713
               

               
Cow position:
               
chr6:47540600-47540274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 28
               

               
Conread position:
               
382-797
               

               
Cow position:
               
chr6:38234026-38233630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
182, 16
               

               
Conread position:
               
383-681
               

               
Cow position:
               
chr6:7694263-7694573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
53, 187
               

               
Conread position:
               
383-718
               

               
Cow position:
               
chr6:50119714-50120041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
383-797
               

               
Cow position:
               
chr6:64303579-64303986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
217, 15
               

               
Conread position:
               
384-536
               

               
Cow position:
               
chr6:57299082-57298938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
384-710
               

               
Cow position:
               
chr6:5673314-5672980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
385-625
               

               
Cow position:
               
chr6:49694445-49694215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 49
               

               
Conread position:
               
385-667
               

               
Cow position:
               
chr6:47989238-47988988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
385-686
               

               
Cow position:
               
chr6:60239329-60239613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
281, 58
               

               
Conread position:
               
385-713
               

               
Cow position:
               
chr6:36928727-36928401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 146
               

               
Conread position:
               
390-713
               

               
Cow position:
               
chr6:16411252-16410944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 46
               

               
Conread position:
               
392-667
               

               
Cow position:
               
chr6:12630080-12629823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
207, 51
               

               
Conread position:
               
393-672
               

               
Cow position:
               
chr6:8187462-8187726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
155, 51
               

               
Conread position:
               
395-497
               

               
Cow position:
               
chr6:31928380-31928280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
395-577
               

               
Cow position:
               
chr6:33150352-33150531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
151, 49
               

               
Conread position:
               
395-661
               

               
Cow position:
               
chr6:53731580-53731325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
204, 51
               

               
Conread position:
               
395-667
               

               
Cow position:
               
chr6:61137431-61137163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
168, 48
               

               
Conread position:
               
395-684
               

               
Cow position:
               
chr6:25773329-25773604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
275, 48
               

               
Conread position:
               
395-685
               

               
Cow position:
               
chr6:45160242-45160515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
208, 41
               

               
Conread position:
               
395-689
               

               
Cow position:
               
chr6:67304861-67304574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
395-708
               

               
Cow position:
               
chr6:13741757-13741450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 50
               

               
Conread position:
               
395-710
               

               
Cow position:
               
chr6:53711171-53710867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 50
               

               
Conread position:
               
395-713
               

               
Cow position:
               
chr6:5957972-5958268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 46
               

               
Conread position:
               
395-713
               

               
Cow position:
               
chr6:6614493-6614183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
196, 49
               

               
Conread position:
               
395-713
               

               
Cow position:
               
chr6:14838969-14839278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
168, 52
               

               
Conread position:
               
395-713
               

               
Cow position:
               
chr6:58076286-58075976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
395-713
               

               
Cow position:
               
chr6:66303784-66304093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
395-714
               

               
Cow position:
               
chr6:62479104-62479418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
397-718
               

               
Cow position:
               
chr6:21311704-21312011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
151, 48
               

               
Conread position:
               
398-641
               

               
Cow position:
               
chr6:49604729-49604507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
201, 24
               

               
Conread position:
               
398-712
               

               
Cow position:
               
chr6:2423798-2423498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
150, 39
               

               
Conread position:
               
398-713
               

               
Cow position:
               
chr6:16738072-16737769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
202, 46
               

               
Conread position:
               
399-625
               

               
Cow position:
               
chr6:40834416-40834633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 48
               

               
Conread position:
               
399-689
               

               
Cow position:
               
chr6:52025598-52025879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
400-588
               

               
Cow position:
               
chr6:29266255-29266070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 34
               

               
Conread position:
               
400-718
               

               
Cow position:
               
chr6:20230775-20231081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
401-577
               

               
Cow position:
               
chr6:19351106-19351279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 20
               

               
Conread position:
               
401-698
               

               
Cow position:
               
chr6:32335851-32335580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 46
               

               
Conread position:
               
401-713
               

               
Cow position:
               
chr6:19427507-19427198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
402-689
               

               
Cow position:
               
chr6:49685634-49685357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
197, 45
               

               
Conread position:
               
402-713
               

               
Cow position:
               
chr6:60456878-60456579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
403-678
               

               
Cow position:
               
chr6:48344381-48344111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
404-719
               

               
Cow position:
               
chr6:642519-642834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
405-517
               

               
Cow position:
               
chr6:30896185-30896299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
405-671
               

               
Cow position:
               
chr6:18968734-18968981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
245, 40
               

               
Conread position:
               
405-712
               

               
Cow position:
               
chr6:1174427-1174752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
406-587
               

               
Cow position:
               
chr6:357841-358025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
406-680
               

               
Cow position:
               
chr6:5462013-5462267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
262, 43
               

               
Conread position:
               
407-671
               

               
Cow position:
               
chr6:24515154-24515400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
192, 38
               

               
Conread position:
               
408-782
               

               
Cow position:
               
chr6:54294145-54293794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 32
               

               
Conread position:
               
413-533
               

               
Cow position:
               
chr6:58363970-58364089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
413-583
               

               
Cow position:
               
chr6:603134-602962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
413-694
               

               
Cow position:
               
chr6:54884865-54885146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
420-689
               

               
Cow position:
               
chr6:30826000-30826262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 23
               

               
Conread position:
               
437-563
               

               
Cow position:
               
chr6:61644814-61644937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
438-709
               

               
Cow position:
               
chr6:55842140-55842408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
440-679
               

               
Cow position:
               
chr6:15922983-15923215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
442-713
               

               
Cow position:
               
chr6:41823808-41824080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
62, 79
               

               
Conread position:
               
449-685
               

               
Cow position:
               
chr6:389180-388947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
449-713
               

               
Cow position:
               
chr6:2013025-2012767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
449-713
               

               
Cow position:
               
chr6:22877152-22877406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
219, 66
               

               
Conread position:
               
449-784
               

               
Cow position:
               
chr6:48806989-48807337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
206, 60
               

               
Conread position:
               
450-628
               

               
Cow position:
               
chr6:32986993-32987161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 79
               

               
Conread position:
               
450-664
               

               
Cow position:
               
chr6:33277048-33276840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 95
               

               
Conread position:
               
450-695
               

               
Cow position:
               
chr6:1890839-1891079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
450-713
               

               
Cow position:
               
chr6:24327136-24327387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
218, 60
               

               
Conread position:
               
452-708
               

               
Cow position:
               
chr6:32210625-32210875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 77
               

               
Conread position:
               
452-713
               

               
Cow position:
               
chr6:61575612-61575352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 68
               

               
Conread position:
               
453-713
               

               
Cow position:
               
chr6:15046078-15046347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
95, 72
               

               
Conread position:
               
457-695
               

               
Cow position:
               
chr6:39994463-39994695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
142, 49
               

               
Conread position:
               
464-797
               

               
Cow position:
               
chr6:16594073-16593732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 82
               

               
Conread position:
               
465-713
               

               
Cow position:
               
chr6:55538132-55538375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 81
               

               
Conread position:
               
470-706
               

               
Cow position:
               
chr6:1783792-1784017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
473-713
               

               
Cow position:
               
chr6:53345779-53345544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
126, 53
               

               
Conread position:
               
482-686
               

               
Cow position:
               
chr6:59015585-59015787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
485-666
               

               
Cow position:
               
chr6:46245347-46245524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
485-698
               

               
Cow position:
               
chr6:61978204-61978418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
485-713
               

               
Cow position:
               
chr6:46667082-46666854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
492-690
               

               
Cow position:
               
chr6:59301857-59302053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
493-797
               

               
Cow position:
               
chr6:28559386-28559075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
107, 36
               

               
Conread position:
               
494-712
               

               
Cow position:
               
chr6:10649063-10649269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
496-698
               

               
Cow position:
               
chr6:62966922-62967124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
500-708
               

               
Cow position:
               
chr6:12845267-12845070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
500-713
               

               
Cow position:
               
chr6:17067863-17068072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
574-713
               

               
Cow position:
               
chr6:16397291-16397434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
574-797
               

               
Cow position:
               
chr6:43394559-43394320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
599-795
               

               
Cow position:
               
chr6:7009583-7009383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
604-797
               

               
Cow position:
               
chr6:27240120-27240325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 165
               
Show alignments to all cow chromosomes.