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Cow genome map

           
Conread name:
           
LyN1-MLN01F030047
        

               
Conread position:
               
181-647
               

               
Cow position:
               
chr9:61544454-61544900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 120
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr9:63896342-63896682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
187-436
               

               
Cow position:
               
chr9:22440675-22440428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
192-702
               

               
Cow position:
               
chr9:17799440-17799960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
195-709
               

               
Cow position:
               
chr9:9461863-9461340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 206
               

               
Conread position:
               
196-432
               

               
Cow position:
               
chr9:21292600-21292357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 201
               

               
Conread position:
               
199-523
               

               
Cow position:
               
chr9:31359420-31359737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
199-713
               

               
Cow position:
               
chr9:9516937-9516450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 87
               

               
Conread position:
               
201-391
               

               
Cow position:
               
chr9:1403726-1403525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
18, 176
               

               
Conread position:
               
201-410
               

               
Cow position:
               
chr9:54940613-54940398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
202-578
               

               
Cow position:
               
chr9:1370749-1371121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
202-653
               

               
Cow position:
               
chr9:35028353-35027915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 201
               

               
Conread position:
               
202-663
               

               
Cow position:
               
chr9:9596135-9595686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
204-317
               

               
Cow position:
               
chr9:8066223-8066113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
204-364
               

               
Cow position:
               
chr9:55284524-55284360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
204-391
               

               
Cow position:
               
chr9:12129123-12129318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
205-388
               

               
Cow position:
               
chr9:8467876-8468065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
205-392
               

               
Cow position:
               
chr9:59897413-59897606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 92
               

               
Conread position:
               
205-441
               

               
Cow position:
               
chr9:43159574-43159811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
205-478
               

               
Cow position:
               
chr9:21384125-21383861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
205-661
               

               
Cow position:
               
chr9:41282828-41283291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 206
               

               
Conread position:
               
205-713
               

               
Cow position:
               
chr9:16300756-16300247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
205-713
               

               
Cow position:
               
chr9:22318178-22318659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 83
               

               
Conread position:
               
206-400
               

               
Cow position:
               
chr9:47928738-47928923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
206-713
               

               
Cow position:
               
chr9:8636496-8636978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
207-391
               

               
Cow position:
               
chr9:22447475-22447283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
208-315
               

               
Cow position:
               
chr9:37016472-37016367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
208-334
               

               
Cow position:
               
chr9:55577531-55577655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
208-338
               

               
Cow position:
               
chr9:62136297-62136163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
208-364
               

               
Cow position:
               
chr9:44793279-44793120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
96, 146
               

               
Conread position:
               
208-375
               

               
Cow position:
               
chr9:5399283-5399448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
208-389
               

               
Cow position:
               
chr9:6929975-6929782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
208-393
               

               
Cow position:
               
chr9:24079125-24079315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
208-410
               

               
Cow position:
               
chr9:31344790-31344579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
78, 196
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr9:4181727-4181507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
208-519
               

               
Cow position:
               
chr9:5900134-5899829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
208-532
               

               
Cow position:
               
chr9:32115761-32115462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
208-542
               

               
Cow position:
               
chr9:33411751-33411420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
208-682
               

               
Cow position:
               
chr9:59013520-59013045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
17, 175
               

               
Conread position:
               
208-685
               

               
Cow position:
               
chr9:44709653-44710114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
208-686
               

               
Cow position:
               
chr9:20901298-20900837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 89
               

               
Conread position:
               
208-690
               

               
Cow position:
               
chr9:10144662-10144178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
208-710
               

               
Cow position:
               
chr9:28772961-28773435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 51
               

               
Conread position:
               
208-718
               

               
Cow position:
               
chr9:9199951-9199460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 42
               

               
Conread position:
               
208-796
               

               
Cow position:
               
chr9:5392893-5393467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 95
               

               
Conread position:
               
209-332
               

               
Cow position:
               
chr9:43876137-43876011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
209-334
               

               
Cow position:
               
chr9:28866272-28866143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
209-335
               

               
Cow position:
               
chr9:3946327-3946200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
209-335
               

               
Cow position:
               
chr9:32877880-32878002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
209-338
               

               
Cow position:
               
chr9:45170563-45170430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
209-339
               

               
Cow position:
               
chr9:24000933-24000805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
209-339
               

               
Cow position:
               
chr9:35905176-35905048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
209-340
               

               
Cow position:
               
chr9:51609100-51609228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
209-360
               

               
Cow position:
               
chr9:50647890-50648047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 76
               

               
Conread position:
               
209-372
               

               
Cow position:
               
chr9:51891072-51891238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr9:9494980-9495149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr9:12268856-12269023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr9:40586892-40587053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
128, 54
               

               
Conread position:
               
209-389
               

               
Cow position:
               
chr9:34423440-34423631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
209-390
               

               
Cow position:
               
chr9:28315245-28315439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
209-390
               

               
Cow position:
               
chr9:35932993-35932802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr9:17785749-17785555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr9:33128032-33127843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
209-391
               

               
Cow position:
               
chr9:43352796-43352987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
209-392
               

               
Cow position:
               
chr9:35403401-35403595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
209-392
               

               
Cow position:
               
chr9:53632105-53631912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 185
               

               
Conread position:
               
209-395
               

               
Cow position:
               
chr9:49874390-49874573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 96
               

               
Conread position:
               
209-406
               

               
Cow position:
               
chr9:28718538-28718736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
209-412
               

               
Cow position:
               
chr9:34135550-34135746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
209-416
               

               
Cow position:
               
chr9:35306528-35306312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
209-420
               

               
Cow position:
               
chr9:8613392-8613173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
209-425
               

               
Cow position:
               
chr9:36457818-36458044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
209-434
               

               
Cow position:
               
chr9:32662215-32661974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
209-437
               

               
Cow position:
               
chr9:14738073-14738304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 81
               

               
Conread position:
               
209-441
               

               
Cow position:
               
chr9:33347660-33347431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
128, 75
               

               
Conread position:
               
209-441
               

               
Cow position:
               
chr9:39315684-39315906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
209-441
               

               
Cow position:
               
chr9:44389175-44388935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 193
               

               
Conread position:
               
209-446
               

               
Cow position:
               
chr9:42586727-42586491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
209-448
               

               
Cow position:
               
chr9:36627945-36628182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
125, 12
               

               
Conread position:
               
209-451
               

               
Cow position:
               
chr9:5061698-5061470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
236, 121
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chr9:63700945-63700701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 86
               

               
Conread position:
               
209-465
               

               
Cow position:
               
chr9:34279238-34278976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
85, 156
               

               
Conread position:
               
209-472
               

               
Cow position:
               
chr9:50382499-50382239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
209-478
               

               
Cow position:
               
chr9:35832793-35832524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
209-489
               

               
Cow position:
               
chr9:28263338-28263620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
209-499
               

               
Cow position:
               
chr9:52510936-52511227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 196
               

               
Conread position:
               
209-508
               

               
Cow position:
               
chr9:6951931-6952228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 118
               

               
Conread position:
               
209-523
               

               
Cow position:
               
chr9:40005298-40005612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
209-527
               

               
Cow position:
               
chr9:60080714-60081046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
93, 179
               

               
Conread position:
               
209-528
               

               
Cow position:
               
chr9:53281386-53281053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 256
               

               
Conread position:
               
209-531
               

               
Cow position:
               
chr9:11950212-11949874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
86, 243
               

               
Conread position:
               
209-533
               

               
Cow position:
               
chr9:20579767-20579459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
209-533
               

               
Cow position:
               
chr9:39011647-39011330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
209-533
               

               
Cow position:
               
chr9:54411344-54411004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
36, 198
               

               
Conread position:
               
209-535
               

               
Cow position:
               
chr9:40215068-40215390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 171
               

               
Conread position:
               
209-540
               

               
Cow position:
               
chr9:34283779-34284101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
209-559
               

               
Cow position:
               
chr9:47591163-47590814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 195
               

               
Conread position:
               
209-559
               

               
Cow position:
               
chr9:57274042-57274398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
209-562
               

               
Cow position:
               
chr9:5456350-5456005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 14
               

               
Conread position:
               
209-563
               

               
Cow position:
               
chr9:31215900-31216258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
93, 270
               

               
Conread position:
               
209-563
               

               
Cow position:
               
chr9:51721066-51720732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
209-583
               

               
Cow position:
               
chr9:30477951-30477584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
209-586
               

               
Cow position:
               
chr9:10650467-10650110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
209-586
               

               
Cow position:
               
chr9:16811839-16811460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
209-586
               

               
Cow position:
               
chr9:52638349-52637957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 200
               

               
Conread position:
               
209-587
               

               
Cow position:
               
chr9:42037493-42037853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
337, 56
               

               
Conread position:
               
209-590
               

               
Cow position:
               
chr9:35128296-35128702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-597
               

               
Cow position:
               
chr9:47500380-47500003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
209-598
               

               
Cow position:
               
chr9:11123659-11123272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 86
               

               
Conread position:
               
209-622
               

               
Cow position:
               
chr9:27279128-27279544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
209-632
               

               
Cow position:
               
chr9:46981401-46980997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
209-641
               

               
Cow position:
               
chr9:52130832-52131263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 190
               

               
Conread position:
               
209-667
               

               
Cow position:
               
chr9:5757156-5756732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
209-667
               

               
Cow position:
               
chr9:23042620-23043046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
209-667
               

               
Cow position:
               
chr9:47868846-47869277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 14
               

               
Conread position:
               
209-667
               

               
Cow position:
               
chr9:62859502-62859946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
209-670
               

               
Cow position:
               
chr9:51620265-51620709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 97
               

               
Conread position:
               
209-684
               

               
Cow position:
               
chr9:29824837-29825321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
209-684
               

               
Cow position:
               
chr9:34286617-34287082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 197
               

               
Conread position:
               
209-685
               

               
Cow position:
               
chr9:32732843-32732396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 80
               

               
Conread position:
               
209-689
               

               
Cow position:
               
chr9:17872286-17871811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 89
               

               
Conread position:
               
209-689
               

               
Cow position:
               
chr9:26279350-26278880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
209-689
               

               
Cow position:
               
chr9:41789124-41789571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 21
               

               
Conread position:
               
209-698
               

               
Cow position:
               
chr9:28747699-28747216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
209-710
               

               
Cow position:
               
chr9:28983020-28983502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
209-710
               

               
Cow position:
               
chr9:33219139-33218634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
209-712
               

               
Cow position:
               
chr9:13169844-13169353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 196
               

               
Conread position:
               
209-713
               

               
Cow position:
               
chr9:39152840-39152366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
445, 81
               

               
Conread position:
               
209-713
               

               
Cow position:
               
chr9:48563899-48564416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
209-733
               

               
Cow position:
               
chr9:50977435-50976901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 257
               

               
Conread position:
               
209-753
               

               
Cow position:
               
chr9:54681342-54681863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
457, 43
               

               
Conread position:
               
209-783
               

               
Cow position:
               
chr9:22152262-22151687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
209-783
               

               
Cow position:
               
chr9:31625952-31626541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 263
               

               
Conread position:
               
209-786
               

               
Cow position:
               
chr9:55795579-55796153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
89, 173
               

               
Conread position:
               
210-296
               

               
Cow position:
               
chr9:35932787-35932701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
87
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-307
               

               
Cow position:
               
chr9:56324280-56324377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-329
               

               
Cow position:
               
chr9:38370298-38370419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
210-332
               

               
Cow position:
               
chr9:60138619-60138740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
210-333
               

               
Cow position:
               
chr9:14797182-14797065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
210-335
               

               
Cow position:
               
chr9:20394492-20394367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 90
               

               
Conread position:
               
210-335
               

               
Cow position:
               
chr9:54639995-54639870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-340
               

               
Cow position:
               
chr9:58756354-58756482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
210-341
               

               
Cow position:
               
chr9:34875350-34875209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
210-358
               

               
Cow position:
               
chr9:6726869-6727021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
210-367
               

               
Cow position:
               
chr9:60741361-60741197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
70, 123
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr9:26715075-26715245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 106
               

               
Conread position:
               
210-379
               

               
Cow position:
               
chr9:26394525-26394350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
210-381
               

               
Cow position:
               
chr9:11393390-11393206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
210-384
               

               
Cow position:
               
chr9:32052097-32052280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
210-386
               

               
Cow position:
               
chr9:26388039-26388214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
210-386
               

               
Cow position:
               
chr9:55013520-55013326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
210-387
               

               
Cow position:
               
chr9:17027019-17027204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
210-388
               

               
Cow position:
               
chr9:31346336-31346522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
210-389
               

               
Cow position:
               
chr9:20828726-20828915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
210-390
               

               
Cow position:
               
chr9:9091286-9091095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
210-390
               

               
Cow position:
               
chr9:48808969-48809148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
210-390
               

               
Cow position:
               
chr9:58440561-58440358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
210-391
               

               
Cow position:
               
chr9:59173121-59172941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
84, 136
               

               
Conread position:
               
210-394
               

               
Cow position:
               
chr9:8645087-8645281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
210-394
               

               
Cow position:
               
chr9:39061433-39061625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
82, 105
               

               
Conread position:
               
210-400
               

               
Cow position:
               
chr9:40221362-40221165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
210-402
               

               
Cow position:
               
chr9:17350469-17350280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 76
               

               
Conread position:
               
210-404
               

               
Cow position:
               
chr9:18003355-18003169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
210-404
               

               
Cow position:
               
chr9:20238149-20237946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-406
               

               
Cow position:
               
chr9:35295517-35295716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
210-406
               

               
Cow position:
               
chr9:46344747-46344960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 201
               

               
Conread position:
               
210-408
               

               
Cow position:
               
chr9:2397632-2397833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
210-408
               

               
Cow position:
               
chr9:59586137-59586337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
210-410
               

               
Cow position:
               
chr9:5220994-5220782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 191
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr9:8537129-8537339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
210-415
               

               
Cow position:
               
chr9:35466700-35466489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
210-416
               

               
Cow position:
               
chr9:24854836-24855050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 192
               

               
Conread position:
               
210-429
               

               
Cow position:
               
chr9:44526931-44527153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 142
               

               
Conread position:
               
210-430
               

               
Cow position:
               
chr9:41644931-41644702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
210-436
               

               
Cow position:
               
chr9:29984284-29984518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
210-438
               

               
Cow position:
               
chr9:57131320-57131551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 42
               

               
Conread position:
               
210-438
               

               
Cow position:
               
chr9:63853029-63853266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-439
               

               
Cow position:
               
chr9:13945424-13945663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 194
               

               
Conread position:
               
210-439
               

               
Cow position:
               
chr9:35049302-35049530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
210-440
               

               
Cow position:
               
chr9:32388163-32387926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
85, 194
               

               
Conread position:
               
210-441
               

               
Cow position:
               
chr9:9459812-9460038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
210-441
               

               
Cow position:
               
chr9:28156522-28156752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 128
               

               
Conread position:
               
210-442
               

               
Cow position:
               
chr9:7611965-7611732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
125, 62
               

               
Conread position:
               
210-443
               

               
Cow position:
               
chr9:17277070-17276828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
74, 193
               

               
Conread position:
               
210-447
               

               
Cow position:
               
chr9:12680935-12681180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
210-466
               

               
Cow position:
               
chr9:8629091-8628836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
210-472
               

               
Cow position:
               
chr9:12398417-12398685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 189
               

               
Conread position:
               
210-476
               

               
Cow position:
               
chr9:6954431-6954157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 200
               

               
Conread position:
               
210-488
               

               
Cow position:
               
chr9:35547087-35547373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
85, 193
               

               
Conread position:
               
210-488
               

               
Cow position:
               
chr9:35729211-35728927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 196
               

               
Conread position:
               
210-489
               

               
Cow position:
               
chr9:3356935-3356653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 182
               

               
Conread position:
               
210-492
               

               
Cow position:
               
chr9:45444981-45445269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 195
               

               
Conread position:
               
210-501
               

               
Cow position:
               
chr9:50125778-50125479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 201
               

               
Conread position:
               
210-507
               

               
Cow position:
               
chr9:9311681-9311980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 190
               

               
Conread position:
               
210-507
               

               
Cow position:
               
chr9:33584862-33584562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
124, 187
               

               
Conread position:
               
210-515
               

               
Cow position:
               
chr9:16120995-16121300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
100, 133
               

               
Conread position:
               
210-527
               

               
Cow position:
               
chr9:3573286-3573610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 150
               

               
Conread position:
               
210-527
               

               
Cow position:
               
chr9:11969008-11969328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
210-532
               

               
Cow position:
               
chr9:9573142-9573477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
75, 252
               

               
Conread position:
               
210-533
               

               
Cow position:
               
chr9:5263325-5263647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
210-534
               

               
Cow position:
               
chr9:8901407-8901076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 105
               

               
Conread position:
               
210-534
               

               
Cow position:
               
chr9:11168567-11168877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
210-534
               

               
Cow position:
               
chr9:12280795-12281115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
210-534
               

               
Cow position:
               
chr9:48730250-48730575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 163
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr9:10905998-10905666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
99, 193
               

               
Conread position:
               
210-536
               

               
Cow position:
               
chr9:40543496-40543175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
210-537
               

               
Cow position:
               
chr9:11304268-11303931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 189
               

               
Conread position:
               
210-559
               

               
Cow position:
               
chr9:49374004-49374355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
210-569
               

               
Cow position:
               
chr9:26477034-26477392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 189
               

               
Conread position:
               
210-570
               

               
Cow position:
               
chr9:22408579-22408930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 197
               

               
Conread position:
               
210-583
               

               
Cow position:
               
chr9:62724366-62724739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
210-586
               

               
Cow position:
               
chr9:42061915-42062315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 251
               

               
Conread position:
               
210-601
               

               
Cow position:
               
chr9:4512299-4512691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 198
               

               
Conread position:
               
210-626
               

               
Cow position:
               
chr9:6338615-6339032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
210-628
               

               
Cow position:
               
chr9:43623087-43623492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
82, 193
               

               
Conread position:
               
210-629
               

               
Cow position:
               
chr9:52619468-52619885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 184
               

               
Conread position:
               
210-635
               

               
Cow position:
               
chr9:6839819-6840250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
210-664
               

               
Cow position:
               
chr9:22637921-22638368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 194
               

               
Conread position:
               
210-664
               

               
Cow position:
               
chr9:33597795-33598249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 208
               

               
Conread position:
               
210-686
               

               
Cow position:
               
chr9:45141772-45141324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
210-698
               

               
Cow position:
               
chr9:20318752-20318277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 192
               

               
Conread position:
               
210-702
               

               
Cow position:
               
chr9:20322270-20321803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
210-710
               

               
Cow position:
               
chr9:15983253-15982763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 197
               

               
Conread position:
               
210-710
               

               
Cow position:
               
chr9:52406992-52407488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr9:8998175-8998676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr9:21460331-21459834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 53
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr9:22434102-22433622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr9:47906463-47905959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
210-713
               

               
Cow position:
               
chr9:52485092-52484600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr9:5441833-5442314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
387, 49
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr9:9551910-9552410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr9:15806104-15805596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 194
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr9:21030126-21030642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 198
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr9:26403617-26404114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 97
               

               
Conread position:
               
210-718
               

               
Cow position:
               
chr9:44822501-44821979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
210-722
               

               
Cow position:
               
chr9:25965018-25964494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 118
               

               
Conread position:
               
210-734
               

               
Cow position:
               
chr9:41416152-41416689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
210-745
               

               
Cow position:
               
chr9:52505484-52504954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
210-762
               

               
Cow position:
               
chr9:43207556-43207011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 194
               

               
Conread position:
               
210-795
               

               
Cow position:
               
chr9:52689792-52689213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 196
               

               
Conread position:
               
210-796
               

               
Cow position:
               
chr9:5327084-5327650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
211-300
               

               
Cow position:
               
chr9:61274396-61274485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-332
               

               
Cow position:
               
chr9:21816354-21816476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
211-335
               

               
Cow position:
               
chr9:9431886-9432011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chr9:17769145-17769315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
211-380
               

               
Cow position:
               
chr9:34760543-34760364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
211-391
               

               
Cow position:
               
chr9:11447984-11447798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
84, 177
               

               
Conread position:
               
211-391
               

               
Cow position:
               
chr9:16115782-16115597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 87
               

               
Conread position:
               
211-391
               

               
Cow position:
               
chr9:53323964-53323772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
211-392
               

               
Cow position:
               
chr9:6205522-6205330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 185
               

               
Conread position:
               
211-394
               

               
Cow position:
               
chr9:7543433-7543245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
211-402
               

               
Cow position:
               
chr9:16216801-16217003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
211-406
               

               
Cow position:
               
chr9:3847218-3847428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
211-409
               

               
Cow position:
               
chr9:1884319-1884103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 204
               

               
Conread position:
               
211-412
               

               
Cow position:
               
chr9:5068660-5068871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
91, 193
               

               
Conread position:
               
211-412
               

               
Cow position:
               
chr9:13993586-13993798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
211-420
               

               
Cow position:
               
chr9:8767592-8767378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
124, 90
               

               
Conread position:
               
211-440
               

               
Cow position:
               
chr9:61351522-61351280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 199
               

               
Conread position:
               
211-441
               

               
Cow position:
               
chr9:5104586-5104344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
211-442
               

               
Cow position:
               
chr9:20451807-20451568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 97
               

               
Conread position:
               
211-442
               

               
Cow position:
               
chr9:30012694-30012933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 188
               

               
Conread position:
               
211-442
               

               
Cow position:
               
chr9:62144874-62145120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
211-443
               

               
Cow position:
               
chr9:40507771-40507538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
211-474
               

               
Cow position:
               
chr9:5110679-5110947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 191
               

               
Conread position:
               
211-474
               

               
Cow position:
               
chr9:34024522-34024789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
211-484
               

               
Cow position:
               
chr9:8834308-8834032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
73, 193
               

               
Conread position:
               
211-490
               

               
Cow position:
               
chr9:23797087-23797339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
211-503
               

               
Cow position:
               
chr9:38941614-38941315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 194
               

               
Conread position:
               
211-505
               

               
Cow position:
               
chr9:59020407-59020112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
211-523
               

               
Cow position:
               
chr9:6189538-6189235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
116, 10
               

               
Conread position:
               
211-533
               

               
Cow position:
               
chr9:12910577-12910255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
103, 87
               

               
Conread position:
               
211-535
               

               
Cow position:
               
chr9:38624801-38624481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
211-537
               

               
Cow position:
               
chr9:1867295-1867600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
211-583
               

               
Cow position:
               
chr9:4341333-4340970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
211-640
               

               
Cow position:
               
chr9:32815475-32815882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 189
               

               
Conread position:
               
211-667
               

               
Cow position:
               
chr9:34375103-34374659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
211-683
               

               
Cow position:
               
chr9:34468735-34468302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
457, 19
               

               
Conread position:
               
211-686
               

               
Cow position:
               
chr9:15215866-15215387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
211-689
               

               
Cow position:
               
chr9:30137946-30138424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 76
               

               
Conread position:
               
211-689
               

               
Cow position:
               
chr9:58673572-58674038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
74, 193
               

               
Conread position:
               
211-711
               

               
Cow position:
               
chr9:9724057-9723564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
211-713
               

               
Cow position:
               
chr9:9443779-9443271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 70
               

               
Conread position:
               
211-713
               

               
Cow position:
               
chr9:32676500-32677003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
211-718
               

               
Cow position:
               
chr9:11299849-11299372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
211-718
               

               
Cow position:
               
chr9:13993981-13994513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 198
               

               
Conread position:
               
211-718
               

               
Cow position:
               
chr9:19538923-19539422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
211-718
               

               
Cow position:
               
chr9:20847769-20848262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 34
               

               
Conread position:
               
211-797
               

               
Cow position:
               
chr9:5433468-5434044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 111
               

               
Conread position:
               
211-797
               

               
Cow position:
               
chr9:23541578-23541013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
211-797
               

               
Cow position:
               
chr9:29091594-29092202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
212-321
               

               
Cow position:
               
chr9:11216351-11216240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
212-380
               

               
Cow position:
               
chr9:33101279-33101115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
212-385
               

               
Cow position:
               
chr9:63185873-63185689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
212-386
               

               
Cow position:
               
chr9:61019541-61019356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
212-391
               

               
Cow position:
               
chr9:4257152-4256976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
212-391
               

               
Cow position:
               
chr9:52649022-52648846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
212-412
               

               
Cow position:
               
chr9:22804145-22803941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
125, 85
               

               
Conread position:
               
212-423
               

               
Cow position:
               
chr9:3924280-3924484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
212-434
               

               
Cow position:
               
chr9:18439331-18439120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
212-435
               

               
Cow position:
               
chr9:25375909-25375683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
212-437
               

               
Cow position:
               
chr9:4241233-4241461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
212-440
               

               
Cow position:
               
chr9:8992355-8992121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 194
               

               
Conread position:
               
212-441
               

               
Cow position:
               
chr9:7805607-7805833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
212-442
               

               
Cow position:
               
chr9:52763929-52763700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
125, 34
               

               
Conread position:
               
212-470
               

               
Cow position:
               
chr9:7806130-7805879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 76
               

               
Conread position:
               
212-478
               

               
Cow position:
               
chr9:5342422-5342160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 158
               

               
Conread position:
               
212-505
               

               
Cow position:
               
chr9:20755935-20755637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 192
               

               
Conread position:
               
212-516
               

               
Cow position:
               
chr9:1878174-1877878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
212-533
               

               
Cow position:
               
chr9:6852227-6851923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
212-533
               

               
Cow position:
               
chr9:32019503-32019186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
212-533
               

               
Cow position:
               
chr9:41728084-41728404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 186
               

               
Conread position:
               
212-583
               

               
Cow position:
               
chr9:17677293-17676921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 199
               

               
Conread position:
               
212-586
               

               
Cow position:
               
chr9:61302829-61303206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
212-679
               

               
Cow position:
               
chr9:13670460-13670924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
212-713
               

               
Cow position:
               
chr9:5227334-5226844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
212-713
               

               
Cow position:
               
chr9:34697478-34696975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 167
               

               
Conread position:
               
212-718
               

               
Cow position:
               
chr9:6192633-6192137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 89
               

               
Conread position:
               
212-718
               

               
Cow position:
               
chr9:63785085-63784601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 72
               

               
Conread position:
               
212-722
               

               
Cow position:
               
chr9:50607104-50606623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 9
               

               
Conread position:
               
212-783
               

               
Cow position:
               
chr9:36491080-36490500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 203
               

               
Conread position:
               
213-330
               

               
Cow position:
               
chr9:56317897-56318017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 114
               

               
Conread position:
               
213-340
               

               
Cow position:
               
chr9:13722315-13722185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
213-340
               

               
Cow position:
               
chr9:48367703-48367573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
213-366
               

               
Cow position:
               
chr9:19657149-19656990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
213-366
               

               
Cow position:
               
chr9:47510745-47510584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
213-389
               

               
Cow position:
               
chr9:22309024-22309206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
213-389
               

               
Cow position:
               
chr9:49679935-49680123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
213-394
               

               
Cow position:
               
chr9:36401835-36401651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
124, 83
               

               
Conread position:
               
213-401
               

               
Cow position:
               
chr9:36634329-36634527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 190
               

               
Conread position:
               
213-404
               

               
Cow position:
               
chr9:34362561-34362762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 191
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr9:14882311-14882091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 181
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr9:52030304-52030520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
213-433
               

               
Cow position:
               
chr9:39135794-39135577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chr9:54986335-54986084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
213-474
               

               
Cow position:
               
chr9:34344434-34344697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
81, 179
               

               
Conread position:
               
213-477
               

               
Cow position:
               
chr9:58662068-58662329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
213-479
               

               
Cow position:
               
chr9:29819551-29819808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
124, 85
               

               
Conread position:
               
213-487
               

               
Cow position:
               
chr9:36453713-36453440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
118, 190
               

               
Conread position:
               
213-488
               

               
Cow position:
               
chr9:35845193-35844911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
213-505
               

               
Cow position:
               
chr9:37198952-37199241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
213-521
               

               
Cow position:
               
chr9:37934414-37934102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
213-524
               

               
Cow position:
               
chr9:34410568-34410258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
213-532
               

               
Cow position:
               
chr9:11309683-11310008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
213-532
               

               
Cow position:
               
chr9:32670121-32669802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
213-532
               

               
Cow position:
               
chr9:33114164-33114492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 185
               

               
Conread position:
               
213-534
               

               
Cow position:
               
chr9:47446183-47445880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
213-582
               

               
Cow position:
               
chr9:40303310-40302930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 252
               

               
Conread position:
               
213-584
               

               
Cow position:
               
chr9:28452344-28451967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
92, 59
               

               
Conread position:
               
213-603
               

               
Cow position:
               
chr9:58448301-58447905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 243
               

               
Conread position:
               
213-619
               

               
Cow position:
               
chr9:42264046-42264444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
213-623
               

               
Cow position:
               
chr9:53762524-53762928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 75
               

               
Conread position:
               
213-631
               

               
Cow position:
               
chr9:48627848-48628269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 192
               

               
Conread position:
               
213-644
               

               
Cow position:
               
chr9:5209427-5209832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
213-689
               

               
Cow position:
               
chr9:25546482-25546929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 79
               

               
Conread position:
               
213-692
               

               
Cow position:
               
chr9:48118852-48118405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
213-698
               

               
Cow position:
               
chr9:41679587-41680042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 85
               

               
Conread position:
               
213-708
               

               
Cow position:
               
chr9:26345137-26344669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
71, 184
               

               
Conread position:
               
213-713
               

               
Cow position:
               
chr9:6397961-6397467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 194
               

               
Conread position:
               
213-713
               

               
Cow position:
               
chr9:47955435-47954904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 194
               

               
Conread position:
               
213-718
               

               
Cow position:
               
chr9:3387541-3388016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
449, 63
               

               
Conread position:
               
213-718
               

               
Cow position:
               
chr9:20681578-20681084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 184
               

               
Conread position:
               
213-718
               

               
Cow position:
               
chr9:28726904-28726401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 192
               

               
Conread position:
               
214-329
               

               
Cow position:
               
chr9:58232498-58232379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
214-332
               

               
Cow position:
               
chr9:6687520-6687643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
214-391
               

               
Cow position:
               
chr9:34917352-34917174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
6, 80
               

               
Conread position:
               
214-393
               

               
Cow position:
               
chr9:8573211-8573406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
214-438
               

               
Cow position:
               
chr9:56827301-56827537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
214-445
               

               
Cow position:
               
chr9:34768449-34768689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
214-476
               

               
Cow position:
               
chr9:17840853-17840585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 187
               

               
Conread position:
               
214-540
               

               
Cow position:
               
chr9:18425733-18426070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
214-574
               

               
Cow position:
               
chr9:19555215-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
214-710
               

               
Cow position:
               
chr9:20942793-20942294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 220
               

               
Conread position:
               
214-713
               

               
Cow position:
               
chr9:8997383-8997877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 186
               

               
Conread position:
               
215-338
               

               
Cow position:
               
chr9:16826375-16826244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
215-391
               

               
Cow position:
               
chr9:40984331-40984516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
215-394
               

               
Cow position:
               
chr9:53061480-53061676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
215-409
               

               
Cow position:
               
chr9:24191328-24191125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 188
               

               
Conread position:
               
215-441
               

               
Cow position:
               
chr9:23971066-23970837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
122, 68
               

               
Conread position:
               
215-442
               

               
Cow position:
               
chr9:54183693-54183460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
215-446
               

               
Cow position:
               
chr9:48451539-48451775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
215-504
               

               
Cow position:
               
chr9:53109078-53109370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 82
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr9:6340859-6340549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 164
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr9:26440987-26440653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
215-686
               

               
Cow position:
               
chr9:36410523-36410058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 151
               

               
Conread position:
               
215-689
               

               
Cow position:
               
chr9:17634998-17634535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 191
               

               
Conread position:
               
215-707
               

               
Cow position:
               
chr9:55256722-55256235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 82
               

               
Conread position:
               
215-713
               

               
Cow position:
               
chr9:7865898-7866386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 192
               

               
Conread position:
               
215-713
               

               
Cow position:
               
chr9:20406482-20406957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 164
               

               
Conread position:
               
215-713
               

               
Cow position:
               
chr9:38792842-38793340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 186
               

               
Conread position:
               
216-338
               

               
Cow position:
               
chr9:6237662-6237542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
216-381
               

               
Cow position:
               
chr9:57642341-57642508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
216-387
               

               
Cow position:
               
chr9:36624100-36623918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
216-410
               

               
Cow position:
               
chr9:43679948-43680148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
15, 184
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr9:62631839-62631633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 82
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr9:11098623-11098414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr9:53123914-53124131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
72, 187
               

               
Conread position:
               
216-441
               

               
Cow position:
               
chr9:12786648-12786414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
75, 187
               

               
Conread position:
               
216-441
               

               
Cow position:
               
chr9:50310935-50310707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
216-450
               

               
Cow position:
               
chr9:27347646-27347864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
216-459
               

               
Cow position:
               
chr9:54664676-54664925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
216-461
               

               
Cow position:
               
chr9:12337728-12337983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
68, 190
               

               
Conread position:
               
216-503
               

               
Cow position:
               
chr9:19902919-19903196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
216-534
               

               
Cow position:
               
chr9:19034182-19034487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
86, 161
               

               
Conread position:
               
216-535
               

               
Cow position:
               
chr9:52513638-52513304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
53, 202
               

               
Conread position:
               
216-538
               

               
Cow position:
               
chr9:25556811-25557117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
216-586
               

               
Cow position:
               
chr9:1532486-1532133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
216-593
               

               
Cow position:
               
chr9:1916136-1916496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
334, 94
               

               
Conread position:
               
216-654
               

               
Cow position:
               
chr9:58979233-58979659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 121
               

               
Conread position:
               
216-662
               

               
Cow position:
               
chr9:64637380-64637811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
216-666
               

               
Cow position:
               
chr9:54677085-54677492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
81, 183
               

               
Conread position:
               
216-667
               

               
Cow position:
               
chr9:1751157-1751606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
216-686
               

               
Cow position:
               
chr9:32307406-32306946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 191
               

               
Conread position:
               
216-687
               

               
Cow position:
               
chr9:4861224-4861684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
216-710
               

               
Cow position:
               
chr9:5500692-5501167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 43
               

               
Conread position:
               
216-713
               

               
Cow position:
               
chr9:647600-648095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 192
               

               
Conread position:
               
217-339
               

               
Cow position:
               
chr9:52651663-52651537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
217-340
               

               
Cow position:
               
chr9:2984897-2985024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
217-340
               

               
Cow position:
               
chr9:34355948-34355824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
217-340
               

               
Cow position:
               
chr9:48344069-48343942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
217-357
               

               
Cow position:
               
chr9:20355697-20355844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 100
               

               
Conread position:
               
217-383
               

               
Cow position:
               
chr9:61847286-61847121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
217-391
               

               
Cow position:
               
chr9:19718505-19718329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
217-392
               

               
Cow position:
               
chr9:20017226-20017410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-393
               

               
Cow position:
               
chr9:34964905-34964730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
217-394
               

               
Cow position:
               
chr9:34276384-34276196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
217-396
               

               
Cow position:
               
chr9:37951071-37950881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
217-418
               

               
Cow position:
               
chr9:11271514-11271319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
217-425
               

               
Cow position:
               
chr9:32089221-32089432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
217-433
               

               
Cow position:
               
chr9:34484419-34484646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 188
               

               
Conread position:
               
217-440
               

               
Cow position:
               
chr9:48016818-48017039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
75, 91
               

               
Conread position:
               
217-442
               

               
Cow position:
               
chr9:47517026-47517258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
217-495
               

               
Cow position:
               
chr9:52755023-52754748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
217-499
               

               
Cow position:
               
chr9:45171394-45171106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
217-540
               

               
Cow position:
               
chr9:32348994-32348668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
32, 195
               

               
Conread position:
               
217-659
               

               
Cow position:
               
chr9:34902269-34901852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 67
               

               
Conread position:
               
217-682
               

               
Cow position:
               
chr9:24887034-24887485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 183
               

               
Conread position:
               
217-713
               

               
Cow position:
               
chr9:20815695-20816162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
217-789
               

               
Cow position:
               
chr9:8547638-8548225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
217-797
               

               
Cow position:
               
chr9:45285710-45285114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 187
               

               
Conread position:
               
218-317
               

               
Cow position:
               
chr9:35491261-35491365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr9:1984654-1984487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
218-391
               

               
Cow position:
               
chr9:12773524-12773701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
218-408
               

               
Cow position:
               
chr9:40603497-40603694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 188
               

               
Conread position:
               
218-412
               

               
Cow position:
               
chr9:41470271-41470068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
218-413
               

               
Cow position:
               
chr9:9557513-9557717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 112
               

               
Conread position:
               
218-430
               

               
Cow position:
               
chr9:27345759-27345536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
218-433
               

               
Cow position:
               
chr9:48017937-48017723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
218-441
               

               
Cow position:
               
chr9:58452240-58452020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 78
               

               
Conread position:
               
218-467
               

               
Cow position:
               
chr9:41785051-41785292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
218-500
               

               
Cow position:
               
chr9:23956147-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
119, 79
               

               
Conread position:
               
218-507
               

               
Cow position:
               
chr9:25583661-25583951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
218-522
               

               
Cow position:
               
chr9:13744104-13743797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 186
               

               
Conread position:
               
218-522
               

               
Cow position:
               
chr9:44396489-44396795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
218-532
               

               
Cow position:
               
chr9:44584431-44584747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
218-538
               

               
Cow position:
               
chr9:5398984-5399289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
158, 78
               

               
Conread position:
               
218-667
               

               
Cow position:
               
chr9:56453176-56453604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
82, 64
               

               
Conread position:
               
218-712
               

               
Cow position:
               
chr9:7409607-7410102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
218-713
               

               
Cow position:
               
chr9:37016731-37017205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
218-797
               

               
Cow position:
               
chr9:51566668-51566071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
219-333
               

               
Cow position:
               
chr9:8651510-8651622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
219-391
               

               
Cow position:
               
chr9:12495045-12495225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
219-391
               

               
Cow position:
               
chr9:61286592-61286773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
219-409
               

               
Cow position:
               
chr9:34707479-34707285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
118, 179
               

               
Conread position:
               
219-440
               

               
Cow position:
               
chr9:39709684-39709915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
75, 191
               

               
Conread position:
               
219-462
               

               
Cow position:
               
chr9:44759096-44758853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
111, 71
               

               
Conread position:
               
219-538
               

               
Cow position:
               
chr9:60395218-60394899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
219-713
               

               
Cow position:
               
chr9:6934250-6933751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
219-722
               

               
Cow position:
               
chr9:14975098-14974597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
220-666
               

               
Cow position:
               
chr9:26085889-26086337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 173
               

               
Conread position:
               
221-386
               

               
Cow position:
               
chr9:20712671-20712842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 82
               

               
Conread position:
               
221-394
               

               
Cow position:
               
chr9:48282027-48282216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
221-422
               

               
Cow position:
               
chr9:34034103-34034295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
221-424
               

               
Cow position:
               
chr9:42687912-42687719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
221-443
               

               
Cow position:
               
chr9:4580551-4580343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chr9:5650128-5649882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
221-513
               

               
Cow position:
               
chr9:56065399-56065677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
116, 78
               

               
Conread position:
               
221-531
               

               
Cow position:
               
chr9:64105736-64106052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
116, 88
               

               
Conread position:
               
221-575
               

               
Cow position:
               
chr9:30123763-30124112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
113, 160
               

               
Conread position:
               
221-664
               

               
Cow position:
               
chr9:9753569-9753128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
221-667
               

               
Cow position:
               
chr9:55117915-55118349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 87
               

               
Conread position:
               
221-688
               

               
Cow position:
               
chr9:42446153-42445689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
221-713
               

               
Cow position:
               
chr9:42497661-42498150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 82
               

               
Conread position:
               
221-718
               

               
Cow position:
               
chr9:35167002-35167496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
222-335
               

               
Cow position:
               
chr9:34399504-34399619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
222-337
               

               
Cow position:
               
chr9:1014228-1014113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
222-341
               

               
Cow position:
               
chr9:901607-901485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
222-388
               

               
Cow position:
               
chr9:54598507-54598681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
222-429
               

               
Cow position:
               
chr9:39148916-39149126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
222-438
               

               
Cow position:
               
chr9:63169803-63170028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
222-687
               

               
Cow position:
               
chr9:33940431-33940902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
222-689
               

               
Cow position:
               
chr9:55321488-55321942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
331, 50
               

               
Conread position:
               
223-640
               

               
Cow position:
               
chr9:1729852-1729432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 190
               

               
Conread position:
               
224-376
               

               
Cow position:
               
chr9:21780759-21780920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
229-443
               

               
Cow position:
               
chr9:41964891-41964674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
229-447
               

               
Cow position:
               
chr9:55529644-55529860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
108, 63
               

               
Conread position:
               
229-472
               

               
Cow position:
               
chr9:33541893-33542142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 175
               

               
Conread position:
               
229-477
               

               
Cow position:
               
chr9:5164144-5163893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
229-532
               

               
Cow position:
               
chr9:39211452-39211752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
102, 57
               

               
Conread position:
               
229-698
               

               
Cow position:
               
chr9:10010653-10011108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
230-331
               

               
Cow position:
               
chr9:40619476-40619575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
230-338
               

               
Cow position:
               
chr9:51019025-51019133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
230-373
               

               
Cow position:
               
chr9:28342813-28342658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
230-389
               

               
Cow position:
               
chr9:3198338-3198178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 22
               

               
Conread position:
               
230-390
               

               
Cow position:
               
chr9:1712866-1712696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
230-390
               

               
Cow position:
               
chr9:44625061-44625222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
230-391
               

               
Cow position:
               
chr9:44944631-44944467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
104, 55
               

               
Conread position:
               
230-394
               

               
Cow position:
               
chr9:8016713-8016886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
230-394
               

               
Cow position:
               
chr9:52998536-52998366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
230-394
               

               
Cow position:
               
chr9:61909226-61909402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
230-410
               

               
Cow position:
               
chr9:37955332-37955143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 173
               

               
Conread position:
               
230-415
               

               
Cow position:
               
chr9:7101276-7101475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
60, 178
               

               
Conread position:
               
230-419
               

               
Cow position:
               
chr9:26557807-26558011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
230-425
               

               
Cow position:
               
chr9:22165875-22165670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 174
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr9:32955852-32955626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr9:45749274-45749500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
230-443
               

               
Cow position:
               
chr9:22289605-22289824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
230-478
               

               
Cow position:
               
chr9:25400345-25400105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
230-480
               

               
Cow position:
               
chr9:33822959-33823213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
230-481
               

               
Cow position:
               
chr9:33838466-33838215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 98
               

               
Conread position:
               
230-482
               

               
Cow position:
               
chr9:26102574-26102819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
230-502
               

               
Cow position:
               
chr9:38645507-38645227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
230-516
               

               
Cow position:
               
chr9:4629951-4630234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 66
               

               
Conread position:
               
230-534
               

               
Cow position:
               
chr9:31557888-31557582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
230-536
               

               
Cow position:
               
chr9:1756309-1755995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
80, 180
               

               
Conread position:
               
230-576
               

               
Cow position:
               
chr9:12226143-12225798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
230-588
               

               
Cow position:
               
chr9:63153972-63153616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
230-594
               

               
Cow position:
               
chr9:9815255-9815624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
230-682
               

               
Cow position:
               
chr9:8599467-8599893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
77, 60
               

               
Conread position:
               
230-686
               

               
Cow position:
               
chr9:54716775-54716332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 164
               

               
Conread position:
               
230-710
               

               
Cow position:
               
chr9:61738763-61739234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 176
               

               
Conread position:
               
230-713
               

               
Cow position:
               
chr9:22443781-22443294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
230-713
               

               
Cow position:
               
chr9:29185298-29184816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 178
               

               
Conread position:
               
230-713
               

               
Cow position:
               
chr9:31346791-31347274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 168
               

               
Conread position:
               
230-713
               

               
Cow position:
               
chr9:34958210-34957731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
230-718
               

               
Cow position:
               
chr9:26057587-26057127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
230-718
               

               
Cow position:
               
chr9:56032475-56032004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
230-769
               

               
Cow position:
               
chr9:5835992-5836552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
231-338
               

               
Cow position:
               
chr9:26578365-26578251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
231-370
               

               
Cow position:
               
chr9:11200097-11199947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
231-440
               

               
Cow position:
               
chr9:34973857-34973654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
231-501
               

               
Cow position:
               
chr9:9358661-9358927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
106, 13
               

               
Conread position:
               
231-521
               

               
Cow position:
               
chr9:33043697-33043396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
231-537
               

               
Cow position:
               
chr9:4263246-4262942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 138
               

               
Conread position:
               
231-580
               

               
Cow position:
               
chr9:62150954-62151298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
231-583
               

               
Cow position:
               
chr9:8919847-8920198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 65
               

               
Conread position:
               
231-589
               

               
Cow position:
               
chr9:6366832-6367174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
159, 76
               

               
Conread position:
               
231-629
               

               
Cow position:
               
chr9:3185972-3186375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
231-659
               

               
Cow position:
               
chr9:8723638-8724059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 160
               

               
Conread position:
               
231-680
               

               
Cow position:
               
chr9:3070574-3070135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 174
               

               
Conread position:
               
231-709
               

               
Cow position:
               
chr9:30402586-30402103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
232-377
               

               
Cow position:
               
chr9:18163513-18163358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
232-383
               

               
Cow position:
               
chr9:55807478-55807634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 66
               

               
Conread position:
               
232-388
               

               
Cow position:
               
chr9:27308033-27307877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
232-390
               

               
Cow position:
               
chr9:32773066-32773223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 105
               

               
Conread position:
               
232-399
               

               
Cow position:
               
chr9:14357256-14357435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
232-421
               

               
Cow position:
               
chr9:48115527-48115718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 69
               

               
Conread position:
               
232-436
               

               
Cow position:
               
chr9:7859794-7859583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 154
               

               
Conread position:
               
232-441
               

               
Cow position:
               
chr9:31514091-31513880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 164
               

               
Conread position:
               
232-441
               

               
Cow position:
               
chr9:47214706-47214486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
232-478
               

               
Cow position:
               
chr9:5469713-5469954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
232-503
               

               
Cow position:
               
chr9:54492982-54493254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
232-531
               

               
Cow position:
               
chr9:62471521-62471813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 172
               

               
Conread position:
               
232-658
               

               
Cow position:
               
chr9:38846497-38846087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
232-663
               

               
Cow position:
               
chr9:11068625-11068202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
84, 6
               

               
Conread position:
               
232-687
               

               
Cow position:
               
chr9:55288045-55287600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 152
               

               
Conread position:
               
232-713
               

               
Cow position:
               
chr9:4646475-4646013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 37
               

               
Conread position:
               
232-713
               

               
Cow position:
               
chr9:6879645-6880089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 40
               

               
Conread position:
               
232-713
               

               
Cow position:
               
chr9:18216068-18215593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
232-718
               

               
Cow position:
               
chr9:24726824-24726353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 175
               

               
Conread position:
               
232-718
               

               
Cow position:
               
chr9:56772905-56773404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
234-386
               

               
Cow position:
               
chr9:44261654-44261500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
234-431
               

               
Cow position:
               
chr9:38866136-38865934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr9:58369147-58368937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
234-474
               

               
Cow position:
               
chr9:24652245-24652499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
64, 176
               

               
Conread position:
               
234-522
               

               
Cow position:
               
chr9:55438586-55438289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
234-523
               

               
Cow position:
               
chr9:52267916-52267620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 155
               

               
Conread position:
               
234-713
               

               
Cow position:
               
chr9:29006405-29006881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
235-511
               

               
Cow position:
               
chr9:3353213-3353475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
237-424
               

               
Cow position:
               
chr9:20637224-20637415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 161
               

               
Conread position:
               
237-698
               

               
Cow position:
               
chr9:23388831-23388370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
238-439
               

               
Cow position:
               
chr9:55495139-55494929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 165
               

               
Conread position:
               
238-508
               

               
Cow position:
               
chr9:46930310-46930580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
238-725
               

               
Cow position:
               
chr9:29840760-29841222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
243-533
               

               
Cow position:
               
chr9:41394795-41394508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 165
               

               
Conread position:
               
243-645
               

               
Cow position:
               
chr9:33120036-33119633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
51, 163
               

               
Conread position:
               
246-701
               

               
Cow position:
               
chr9:64091544-64091996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
69, 128
               

               
Conread position:
               
246-718
               

               
Cow position:
               
chr9:31077815-31077353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 161
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr9:37138897-37139136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 166
               

               
Conread position:
               
248-423
               

               
Cow position:
               
chr9:20319189-20319014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
249-701
               

               
Cow position:
               
chr9:20416653-20416201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 143
               

               
Conread position:
               
252-436
               

               
Cow position:
               
chr9:52258202-52258013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 125
               

               
Conread position:
               
253-390
               

               
Cow position:
               
chr9:44093220-44093072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
253-718
               

               
Cow position:
               
chr9:17741076-17740620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
255-634
               

               
Cow position:
               
chr9:56011370-56011735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
255-686
               

               
Cow position:
               
chr9:41513504-41513913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 122
               

               
Conread position:
               
259-443
               

               
Cow position:
               
chr9:5665942-5666126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chr9:6596354-6596082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
263-713
               

               
Cow position:
               
chr9:48107236-48106796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
264-654
               

               
Cow position:
               
chr9:51204610-51204983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
267-476
               

               
Cow position:
               
chr9:41781536-41781745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
267-701
               

               
Cow position:
               
chr9:823838-824264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 138
               

               
Conread position:
               
273-689
               

               
Cow position:
               
chr9:31079191-31078793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
277-653
               

               
Cow position:
               
chr9:3782260-3782620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
277-710
               

               
Cow position:
               
chr9:36445510-36445939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
277-718
               

               
Cow position:
               
chr9:54528403-54528840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
278-479
               

               
Cow position:
               
chr9:55532718-55532908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
278-523
               

               
Cow position:
               
chr9:26310410-26310639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
278-686
               

               
Cow position:
               
chr9:50544748-50544339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 180
               

               
Conread position:
               
279-698
               

               
Cow position:
               
chr9:14796878-14796474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
280-522
               

               
Cow position:
               
chr9:53326851-53326615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
280-783
               

               
Cow position:
               
chr9:15006859-15006366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
283-586
               

               
Cow position:
               
chr9:3738326-3738019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
283-708
               

               
Cow position:
               
chr9:7634167-7634584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
284-478
               

               
Cow position:
               
chr9:64064466-64064265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
284-533
               

               
Cow position:
               
chr9:31638760-31638494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
284-533
               

               
Cow position:
               
chr9:50543530-50543276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
284-534
               

               
Cow position:
               
chr9:28686284-28686539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 115
               

               
Conread position:
               
284-586
               

               
Cow position:
               
chr9:1972845-1973141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
284-597
               

               
Cow position:
               
chr9:37677793-37678087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
284-646
               

               
Cow position:
               
chr9:18217202-18216850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
284-647
               

               
Cow position:
               
chr9:50139182-50139532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 155
               

               
Conread position:
               
284-660
               

               
Cow position:
               
chr9:8562719-8563105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
284-660
               

               
Cow position:
               
chr9:31814489-31814114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
284-663
               

               
Cow position:
               
chr9:11193273-11192901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
7, 164
               

               
Conread position:
               
284-667
               

               
Cow position:
               
chr9:8288515-8288889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
284-685
               

               
Cow position:
               
chr9:17310667-17310269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
284-692
               

               
Cow position:
               
chr9:22696120-22696516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 119
               

               
Conread position:
               
284-708
               

               
Cow position:
               
chr9:33681556-33681995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 271
               

               
Conread position:
               
284-710
               

               
Cow position:
               
chr9:1520842-1520411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
284-712
               

               
Cow position:
               
chr9:39681235-39681678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
284-713
               

               
Cow position:
               
chr9:5594399-5594821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 121
               

               
Conread position:
               
284-713
               

               
Cow position:
               
chr9:21888067-21888490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
284-718
               

               
Cow position:
               
chr9:1949822-1950247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
284-718
               

               
Cow position:
               
chr9:4268085-4267668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
284-718
               

               
Cow position:
               
chr9:5509636-5510049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 15
               

               
Conread position:
               
284-718
               

               
Cow position:
               
chr9:33092857-33093269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
285-485
               

               
Cow position:
               
chr9:43342229-43342429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr9:23261331-23261580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 82
               

               
Conread position:
               
285-533
               

               
Cow position:
               
chr9:62668148-62668397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
285-629
               

               
Cow position:
               
chr9:15225398-15225057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 119
               

               
Conread position:
               
285-678
               

               
Cow position:
               
chr9:60110150-60110515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
285-713
               

               
Cow position:
               
chr9:8534798-8534365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 124
               

               
Conread position:
               
286-563
               

               
Cow position:
               
chr9:35105891-35105611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
286-634
               

               
Cow position:
               
chr9:11319735-11319394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
286-685
               

               
Cow position:
               
chr9:64559983-64559596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
286-707
               

               
Cow position:
               
chr9:44467441-44467034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
286-718
               

               
Cow position:
               
chr9:10309097-10308682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
287-478
               

               
Cow position:
               
chr9:9502989-9503171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
287-532
               

               
Cow position:
               
chr9:23264894-23265139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 81
               

               
Conread position:
               
287-710
               

               
Cow position:
               
chr9:50081140-50080728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
287-713
               

               
Cow position:
               
chr9:53413338-53412929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 118
               

               
Conread position:
               
287-713
               

               
Cow position:
               
chr9:64155951-64155535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 114
               

               
Conread position:
               
287-722
               

               
Cow position:
               
chr9:26435158-26434734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
288-713
               

               
Cow position:
               
chr9:5245753-5246166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 205
               

               
Conread position:
               
289-431
               

               
Cow position:
               
chr9:54051679-54051823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 83
               

               
Conread position:
               
289-586
               

               
Cow position:
               
chr9:19493552-19493260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
197, 34
               

               
Conread position:
               
289-667
               

               
Cow position:
               
chr9:10877988-10877595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
13, 259
               

               
Conread position:
               
289-709
               

               
Cow position:
               
chr9:61997701-61997279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 168
               

               
Conread position:
               
289-713
               

               
Cow position:
               
chr9:17411291-17410868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
289-718
               

               
Cow position:
               
chr9:5319536-5319954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
146, 34
               

               
Conread position:
               
290-505
               

               
Cow position:
               
chr9:52598818-52598605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
290-686
               

               
Cow position:
               
chr9:55084398-55084003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
290-698
               

               
Cow position:
               
chr9:63745718-63746110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
291-494
               

               
Cow position:
               
chr9:18828150-18827947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
291-533
               

               
Cow position:
               
chr9:17518585-17518344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
291-537
               

               
Cow position:
               
chr9:3774069-3774311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
291-556
               

               
Cow position:
               
chr9:33237299-33237555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
291-667
               

               
Cow position:
               
chr9:28354421-28354804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
291-718
               

               
Cow position:
               
chr9:62442194-62442606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
292-534
               

               
Cow position:
               
chr9:42478577-42478321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 113
               

               
Conread position:
               
292-600
               

               
Cow position:
               
chr9:30652806-30652490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
292-713
               

               
Cow position:
               
chr9:64050656-64050239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
293-667
               

               
Cow position:
               
chr9:40542042-40542385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
294-497
               

               
Cow position:
               
chr9:28378875-28379080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
294-525
               

               
Cow position:
               
chr9:52839972-52839748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
295-667
               

               
Cow position:
               
chr9:9823594-9823248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 105
               

               
Conread position:
               
296-476
               

               
Cow position:
               
chr9:48100716-48100887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chr9:23788350-23788551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
298-584
               

               
Cow position:
               
chr9:19713991-19714274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
299-476
               

               
Cow position:
               
chr9:62459279-62459458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
299-586
               

               
Cow position:
               
chr9:43443716-43443994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
299-667
               

               
Cow position:
               
chr9:8337939-8338301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
299-708
               

               
Cow position:
               
chr9:45756276-45756672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
299-713
               

               
Cow position:
               
chr9:38961516-38961116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
299-713
               

               
Cow position:
               
chr9:43870887-43871293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
300-530
               

               
Cow position:
               
chr9:10819915-10819689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
300-531
               

               
Cow position:
               
chr9:33696949-33697173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
300-669
               

               
Cow position:
               
chr9:29684058-29684418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
300-713
               

               
Cow position:
               
chr9:5219259-5218859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
300-723
               

               
Cow position:
               
chr9:55075215-55074803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
303-652
               

               
Cow position:
               
chr9:25921739-25922079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
303-688
               

               
Cow position:
               
chr9:50075980-50076361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
303-713
               

               
Cow position:
               
chr9:62656719-62657113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
304-776
               

               
Cow position:
               
chr9:52000936-52001381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
305-438
               

               
Cow position:
               
chr9:5072915-5072782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 94
               

               
Conread position:
               
306-478
               

               
Cow position:
               
chr9:38289404-38289233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
306-484
               

               
Cow position:
               
chr9:47469839-47470009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
306-661
               

               
Cow position:
               
chr9:55889734-55890075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
310-718
               

               
Cow position:
               
chr9:7362951-7363360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
330-709
               

               
Cow position:
               
chr9:6089039-6089420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
333-534
               

               
Cow position:
               
chr9:49416940-49417134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
333-540
               

               
Cow position:
               
chr9:43936898-43937093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
333-583
               

               
Cow position:
               
chr9:60027150-60027391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
333-640
               

               
Cow position:
               
chr9:49709800-49710088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
333-655
               

               
Cow position:
               
chr9:39577692-39577993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
215, 13
               

               
Conread position:
               
333-667
               

               
Cow position:
               
chr9:24997564-24997245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 21
               

               
Conread position:
               
333-692
               

               
Cow position:
               
chr9:32371798-32371460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
266, 25
               

               
Conread position:
               
333-698
               

               
Cow position:
               
chr9:5162097-5161765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
266, 65
               

               
Conread position:
               
333-700
               

               
Cow position:
               
chr9:22114682-22114325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 57
               

               
Conread position:
               
333-702
               

               
Cow position:
               
chr9:24872789-24873156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 41
               

               
Conread position:
               
333-708
               

               
Cow position:
               
chr9:3220089-3220435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
333-713
               

               
Cow position:
               
chr9:35375379-35375742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 27
               

               
Conread position:
               
333-717
               

               
Cow position:
               
chr9:35904792-35904427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 61
               

               
Conread position:
               
333-797
               

               
Cow position:
               
chr9:11313557-11313083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 65
               

               
Conread position:
               
334-535
               

               
Cow position:
               
chr9:31403294-31403093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
62, 115
               

               
Conread position:
               
334-586
               

               
Cow position:
               
chr9:44834009-44833766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
216, 55
               

               
Conread position:
               
336-535
               

               
Cow position:
               
chr9:34911109-34911306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
336-649
               

               
Cow position:
               
chr9:38615006-38614713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
212, 32
               

               
Conread position:
               
337-698
               

               
Cow position:
               
chr9:13221935-13221587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
262, 49
               

               
Conread position:
               
337-795
               

               
Cow position:
               
chr9:44915140-44914685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 60
               

               
Conread position:
               
338-713
               

               
Cow position:
               
chr9:31124971-31124602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
341-686
               

               
Cow position:
               
chr9:35849864-35850192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr9:48727401-48727219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
342-536
               

               
Cow position:
               
chr9:27029743-27029557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
159, 54
               

               
Conread position:
               
342-536
               

               
Cow position:
               
chr9:41518664-41518471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
129, 102
               

               
Conread position:
               
342-667
               

               
Cow position:
               
chr9:47472648-47472967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
343-494
               

               
Cow position:
               
chr9:40776761-40776905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
345-663
               

               
Cow position:
               
chr9:44108869-44108563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
51, 57
               

               
Conread position:
               
345-718
               

               
Cow position:
               
chr9:54611271-54610907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
346-638
               

               
Cow position:
               
chr9:62134658-62134378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
346-713
               

               
Cow position:
               
chr9:3931927-3932286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
254, 16
               

               
Conread position:
               
346-786
               

               
Cow position:
               
chr9:17928723-17929174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 48
               

               
Conread position:
               
348-618
               

               
Cow position:
               
chr9:3371535-3371801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
154, 49
               

               
Conread position:
               
348-684
               

               
Cow position:
               
chr9:20989490-20989162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
349-538
               

               
Cow position:
               
chr9:43013691-43013876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
178, 22
               

               
Conread position:
               
349-689
               

               
Cow position:
               
chr9:49764630-49764953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
254, 10
               

               
Conread position:
               
349-710
               

               
Cow position:
               
chr9:29808423-29808779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
156, 23
               

               
Conread position:
               
350-694
               

               
Cow position:
               
chr9:16745642-16745976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
350-710
               

               
Cow position:
               
chr9:38343860-38344213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 28
               

               
Conread position:
               
351-713
               

               
Cow position:
               
chr9:5268524-5268877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
352-586
               

               
Cow position:
               
chr9:53211519-53211298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
194, 39
               

               
Conread position:
               
352-661
               

               
Cow position:
               
chr9:6225482-6225187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 19
               

               
Conread position:
               
352-680
               

               
Cow position:
               
chr9:9416423-9416119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
315, 24
               

               
Conread position:
               
353-667
               

               
Cow position:
               
chr9:59795315-59795009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
353-686
               

               
Cow position:
               
chr9:35533980-35533658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 44
               

               
Conread position:
               
355-697
               

               
Cow position:
               
chr9:27697753-27697424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
359-537
               

               
Cow position:
               
chr9:41853411-41853589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
359-702
               

               
Cow position:
               
chr9:25958396-25958722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
360-713
               

               
Cow position:
               
chr9:1952290-1951949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 39
               

               
Conread position:
               
363-627
               

               
Cow position:
               
chr9:50703128-50702881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
198, 33
               

               
Conread position:
               
366-660
               

               
Cow position:
               
chr9:29108523-29108801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
366-661
               

               
Cow position:
               
chr9:49983703-49983427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
234, 85
               

               
Conread position:
               
366-669
               

               
Cow position:
               
chr9:31588117-31587824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
366-718
               

               
Cow position:
               
chr9:8869157-8868810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 30
               

               
Conread position:
               
369-627
               

               
Cow position:
               
chr9:33038472-33038227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
179, 23
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr9:32692103-32692275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
373-627
               

               
Cow position:
               
chr9:32710922-32711163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
181, 24
               

               
Conread position:
               
374-667
               

               
Cow position:
               
chr9:4128787-4128512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
225, 23
               

               
Conread position:
               
375-641
               

               
Cow position:
               
chr9:35360109-35359857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
212, 22
               

               
Conread position:
               
375-669
               

               
Cow position:
               
chr9:5531937-5532225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
375-713
               

               
Cow position:
               
chr9:1997131-1997450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
376-542
               

               
Cow position:
               
chr9:31270775-31270934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
378-713
               

               
Cow position:
               
chr9:34310022-34310355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
171, 13
               

               
Conread position:
               
381-686
               

               
Cow position:
               
chr9:58134019-58133730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
218, 16
               

               
Conread position:
               
382-797
               

               
Cow position:
               
chr9:34919258-34918852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
385-667
               

               
Cow position:
               
chr9:30749586-30749314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
385-667
               

               
Cow position:
               
chr9:40105470-40105747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
164, 64
               

               
Conread position:
               
385-702
               

               
Cow position:
               
chr9:16538812-16538491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
385-784
               

               
Cow position:
               
chr9:54998026-54997629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
386-533
               

               
Cow position:
               
chr9:18029399-18029247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
388-566
               

               
Cow position:
               
chr9:9090359-9090181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
389-667
               

               
Cow position:
               
chr9:29035029-29034769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 152
               

               
Conread position:
               
390-718
               

               
Cow position:
               
chr9:10092386-10092070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 54
               

               
Conread position:
               
395-533
               

               
Cow position:
               
chr9:4324144-4324011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
395-533
               

               
Cow position:
               
chr9:11377931-11377796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
395-583
               

               
Cow position:
               
chr9:3847681-3847868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
395-592
               

               
Cow position:
               
chr9:1879393-1879586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
155, 50
               

               
Conread position:
               
395-639
               

               
Cow position:
               
chr9:40603958-40604193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
205, 49
               

               
Conread position:
               
395-713
               

               
Cow position:
               
chr9:17785443-17785138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
163, 54
               

               
Conread position:
               
395-714
               

               
Cow position:
               
chr9:20738709-20739025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
395-720
               

               
Cow position:
               
chr9:53602440-53602736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
153, 49
               

               
Conread position:
               
395-785
               

               
Cow position:
               
chr9:6118136-6117779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
153, 54
               

               
Conread position:
               
397-686
               

               
Cow position:
               
chr9:37000046-36999767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 50
               

               
Conread position:
               
397-713
               

               
Cow position:
               
chr9:34000605-34000291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
398-713
               

               
Cow position:
               
chr9:19541921-19542229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
201, 49
               

               
Conread position:
               
398-713
               

               
Cow position:
               
chr9:25657525-25657846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
399-578
               

               
Cow position:
               
chr9:14358180-14358357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 44
               

               
Conread position:
               
399-625
               

               
Cow position:
               
chr9:50667438-50667653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
400-685
               

               
Cow position:
               
chr9:64517081-64516804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
400-702
               

               
Cow position:
               
chr9:26390787-26391074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
400-713
               

               
Cow position:
               
chr9:18002936-18002631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
401-713
               

               
Cow position:
               
chr9:59172363-59172058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 43
               

               
Conread position:
               
404-622
               

               
Cow position:
               
chr9:58734390-58734601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
195, 41
               

               
Conread position:
               
404-710
               

               
Cow position:
               
chr9:37528474-37528774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
404-713
               

               
Cow position:
               
chr9:30664758-30664461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
405-686
               

               
Cow position:
               
chr9:35306095-35305825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
405-698
               

               
Cow position:
               
chr9:58439759-58439476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 44
               

               
Conread position:
               
406-540
               

               
Cow position:
               
chr9:5069090-5069217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
408-713
               

               
Cow position:
               
chr9:32812375-32812667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
416-694
               

               
Cow position:
               
chr9:36066939-36067207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
253, 33
               

               
Conread position:
               
416-718
               

               
Cow position:
               
chr9:4928659-4928950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 42
               

               
Conread position:
               
418-583
               

               
Cow position:
               
chr9:29578282-29578444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
421-683
               

               
Cow position:
               
chr9:1984485-1984231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
182, 23
               

               
Conread position:
               
422-718
               

               
Cow position:
               
chr9:42998431-42998137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
177, 23
               

               
Conread position:
               
427-713
               

               
Cow position:
               
chr9:16218604-16218325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
427-745
               

               
Cow position:
               
chr9:5621994-5621681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
428-667
               

               
Cow position:
               
chr9:37069529-37069298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
432-665
               

               
Cow position:
               
chr9:41652832-41653058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
167, 27
               

               
Conread position:
               
437-670
               

               
Cow position:
               
chr9:41995760-41995988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
162, 91
               

               
Conread position:
               
439-667
               

               
Cow position:
               
chr9:61847097-61846879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
447-718
               

               
Cow position:
               
chr9:20394059-20393803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
449-698
               

               
Cow position:
               
chr9:48343664-48343907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 77
               

               
Conread position:
               
449-709
               

               
Cow position:
               
chr9:9490855-9491105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
449-786
               

               
Cow position:
               
chr9:36623381-36623046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
450-713
               

               
Cow position:
               
chr9:39971107-39971354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
451-672
               

               
Cow position:
               
chr9:58204729-58204943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
451-701
               

               
Cow position:
               
chr9:20319015-20318769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
99, 91
               

               
Conread position:
               
451-713
               

               
Cow position:
               
chr9:22228018-22227764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
452-695
               

               
Cow position:
               
chr9:45171101-45170866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
219, 83
               

               
Conread position:
               
453-713
               

               
Cow position:
               
chr9:42585564-42585305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
454-655
               

               
Cow position:
               
chr9:38875509-38875315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
470-663
               

               
Cow position:
               
chr9:37141315-37141494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
482-698
               

               
Cow position:
               
chr9:31662559-31662775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
485-691
               

               
Cow position:
               
chr9:35100966-35101166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
485-718
               

               
Cow position:
               
chr9:22616723-22616944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
487-689
               

               
Cow position:
               
chr9:26310655-26310855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
492-702
               

               
Cow position:
               
chr9:1350341-1350136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
496-717
               

               
Cow position:
               
chr9:18140187-18139971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
501-710
               

               
Cow position:
               
chr9:20237895-20237690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
577-797
               

               
Cow position:
               
chr9:30722121-30722357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
593-797
               

               
Cow position:
               
chr9:9817100-9817325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
713-797
               

               
Cow position:
               
chr9:49292743-49292659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
85
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
715-797
               

               
Cow position:
               
chr9:48017474-48017392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
83
               

               
Alignm identity:
               
74
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.