Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-188
Cow position: chr10:183163-183353 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 14, 131

Conread position: 1-191
Cow position: chr10:54127093-54127272 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 65, 0

Conread position: 1-386
Cow position: chr10:10581292-10581693 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 152

Conread position: 1-457
Cow position: chr10:57990344-57989875 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 151

Conread position: 1-562
Cow position: chr10:14859603-14860160 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 145

Conread position: 1-567
Cow position: chr10:34318634-34318091 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 126

Conread position: 1-573
Cow position: chr10:21486535-21487120 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 157

Conread position: 1-573
Cow position: chr10:22100862-22101437 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 155

Conread position: 1-574
Cow position: chr10:7283060-7282481 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 154

Conread position: 1-579
Cow position: chr10:25565616-25565047 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 126

Conread position: 1-579
Cow position: chr10:32650360-32650944 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 133

Conread position: 1-579
Cow position: chr10:37769445-37770031 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 153

Conread position: 1-579
Cow position: chr10:41566731-41567314 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 147

Conread position: 2-494
Cow position: chr10:42747726-42748217 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 322
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 30, 126

Conread position: 2-559
Cow position: chr10:32063779-32064340 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 12

Conread position: 2-562
Cow position: chr10:28116810-28116242 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 91

Conread position: 2-569
Cow position: chr10:42109357-42109928 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 378
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 66

Conread position: 2-573
Cow position: chr10:1375161-1375736 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 49

Conread position: 3-160
Cow position: chr10:42736131-42736290 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 4-534
Cow position: chr10:21075986-21076529 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 362
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 48, 127

Conread position: 5-579
Cow position: chr10:24299220-24298643 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 21

Conread position: 5-606
Cow position: chr10:25497980-25498594 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 161

Conread position: 6-579
Cow position: chr10:19511234-19511817 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 149

Conread position: 6-579
Cow position: chr10:38546591-38546014 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 50

Conread position: 7-184
Cow position: chr10:1938209-1938032 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 99, 21

Conread position: 7-579
Cow position: chr10:276225-276800 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 7-579
Cow position: chr10:29695879-29696446 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 7-579
Cow position: chr10:62216239-62216817 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 11-583
Cow position: chr10:3543937-3543369 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 76

Conread position: 17-235
Cow position: chr10:21466894-21467112 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 114

Conread position: 17-550
Cow position: chr10:57559908-57559368 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 137

Conread position: 17-553
Cow position: chr10:58377921-58377405 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 351
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 92, 45

Conread position: 17-566
Cow position: chr10:41157095-41157645 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-568
Cow position: chr10:280981-280421 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-574
Cow position: chr10:51952963-51952412 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr10:4192574-4192022 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 218

Conread position: 17-579
Cow position: chr10:11686021-11685460 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 100

Conread position: 17-579
Cow position: chr10:14803474-14804047 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 130

Conread position: 17-579
Cow position: chr10:21401028-21400460 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr10:21741109-21740541 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 48

Conread position: 17-579
Cow position: chr10:39817706-39817152 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 117

Conread position: 17-579
Cow position: chr10:41876562-41877129 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 65

Conread position: 17-579
Cow position: chr10:47906421-47906989 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 75

Conread position: 18-517
Cow position: chr10:60489311-60489803 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 45

Conread position: 21-160
Cow position: chr10:2123468-2123329 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 85, 127

Conread position: 21-235
Cow position: chr10:19715401-19715189 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 85, 49

Conread position: 21-415
Cow position: chr10:37060573-37060973 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-491
Cow position: chr10:29846967-29846485 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-569
Cow position: chr10:8289613-8290183 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr10:38345720-38345157 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr10:19143695-19143127 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 134

Conread position: 21-579
Cow position: chr10:38538847-38538286 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 22-579
Cow position: chr10:123962-124521 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 146

Conread position: 22-579
Cow position: chr10:62409208-62408646 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 133

Conread position: 23-574
Cow position: chr10:34685541-34686099 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 125

Conread position: 23-574
Cow position: chr10:54059703-54059150 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 122

Conread position: 23-606
Cow position: chr10:62777987-62778589 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 426

Conread position: 27-579
Cow position: chr10:32577950-32578500 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 123

Conread position: 27-579
Cow position: chr10:39041656-39041091 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 122

Conread position: 27-579
Cow position: chr10:39179442-39179994 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 100

Conread position: 28-567
Cow position: chr10:38847027-38847557 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 13

Conread position: 31-574
Cow position: chr10:41352100-41351554 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 40

Conread position: 32-574
Cow position: chr10:10478476-10477935 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 84

Conread position: 34-354
Cow position: chr10:55092765-55093099 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 36-563
Cow position: chr10:49310198-49310698 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 35

Conread position: 36-579
Cow position: chr10:25359060-25359610 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 44

Conread position: 50-359
Cow position: chr10:61297006-61297320 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 12

Conread position: 50-416
Cow position: chr10:42628347-42628711 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 56

Conread position: 63-579
Cow position: chr10:29633175-29632652 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 54

Conread position: 73-353
Cow position: chr10:50018361-50018083 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 161, 29

Conread position: 73-564
Cow position: chr10:19839855-19840349 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 54

Conread position: 106-568
Cow position: chr10:42663964-42664395 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 310
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 163, 23

Conread position: 150-579
Cow position: chr10:19496500-19496075 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 25

Conread position: 169-579
Cow position: chr10:13366062-13365659 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 294
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 206

Conread position: 195-562
Cow position: chr10:184082-184463 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 245
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 72

Conread position: 206-539
Cow position: chr10:2421970-2421637 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 217
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 88, 142

Conread position: 219-443
Cow position: chr10:65307964-65308201 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 223-550
Cow position: chr10:57575458-57575787 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 9, 20

Conread position: 232-517
Cow position: chr10:39904783-39905074 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 178

Conread position: 243-573
Cow position: chr10:10415299-10415603 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 26, 69

Conread position: 244-563
Cow position: chr10:15862265-15861942 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 181

Conread position: 256-566
Cow position: chr10:39854133-39853816 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 234

Conread position: 268-550
Cow position: chr10:14951795-14952059 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 29, 8

Conread position: 268-567
Cow position: chr10:66176006-66175708 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 95

Conread position: 276-579
Cow position: chr10:16925437-16925747 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 214

Conread position: 282-579
Cow position: chr10:46694467-46694165 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 192

Conread position: 312-573
Cow position: chr10:2123318-2123057 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 171

Conread position: 341-582
Cow position: chr10:54979905-54979667 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 184, 41

Conread position: 345-568
Cow position: chr10:39445160-39444940 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 86, 0

Conread position: 345-579
Cow position: chr10:40152475-40152244 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 136

Conread position: 368-574
Cow position: chr10:55093244-55093447 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 107, 83

Conread position: 371-498
Cow position: chr10:25454595-25454721 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 378-579
Cow position: chr10:20371956-20371763 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 83, 12

Conread position: 396-569
Cow position: chr10:10581822-10581998 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 55, 85

Conread position: 398-579
Cow position: chr10:6260764-6260586 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 20

Conread position: 401-579
Cow position: chr10:19758386-19758559 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 157, 80

Conread position: 402-568
Cow position: chr10:28931990-28931825 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 78

Conread position: 463-586
Cow position: chr10:31523895-31524016 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.