Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-328 |
| Cow position: | chr13:15542788-15543124 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 157 |
| Conread position: | 1-573 |
| Cow position: | chr13:35756558-35757150 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 502 |
| Conread position: | 1-579 |
| Cow position: | chr13:9043855-9044416 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 1-579 |
| Cow position: | chr13:20543033-20542460 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 1-579 |
| Cow position: | chr13:33336999-33336427 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 2-392 |
| Cow position: | chr13:4481807-4482201 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 2-408 |
| Cow position: | chr13:46733020-46732608 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 150 |
| Conread position: | 3-579 |
| Cow position: | chr13:6668796-6668208 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 4-567 |
| Cow position: | chr13:34912032-34911475 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 6-440 |
| Cow position: | chr13:30237510-30237945 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 6-574 |
| Cow position: | chr13:54283928-54284479 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 11 |
| Conread position: | 6-577 |
| Cow position: | chr13:31613003-31612422 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 140 |
| Conread position: | 6-579 |
| Cow position: | chr13:34936471-34937062 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 7-352 |
| Cow position: | chr13:13046485-13046134 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 7-498 |
| Cow position: | chr13:2232009-2232495 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 7-574 |
| Cow position: | chr13:30657625-30657064 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 7-579 |
| Cow position: | chr13:3276495-3277069 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 8-573 |
| Cow position: | chr13:33825400-33824822 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 10-540 |
| Cow position: | chr13:48356670-48357181 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 102 |
| Conread position: | 16-186 |
| Cow position: | chr13:676307-676477 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 91, 132 |
| Conread position: | 16-579 |
| Cow position: | chr13:15521172-15520600 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 138 |
| Conread position: | 16-579 |
| Cow position: | chr13:31734730-31734170 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 17-235 |
| Cow position: | chr13:53834115-53834333 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 17-343 |
| Cow position: | chr13:35029866-35030185 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 17-496 |
| Cow position: | chr13:34868115-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 127 |
| Conread position: | 17-566 |
| Cow position: | chr13:2297453-2296896 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 17-574 |
| Cow position: | chr13:50108810-50109372 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 17-579 |
| Cow position: | chr13:2389453-2388903 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 230 |
| Conread position: | 17-579 |
| Cow position: | chr13:4872422-4872992 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 138 |
| Conread position: | 17-579 |
| Cow position: | chr13:21840853-21840279 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 478 |
| Conread position: | 17-579 |
| Cow position: | chr13:30245391-30244818 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 18-579 |
| Cow position: | chr13:17307829-17308390 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 125 |
| Conread position: | 18-579 |
| Cow position: | chr13:30140338-30140910 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 21-465 |
| Cow position: | chr13:32544295-32544744 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-537 |
| Cow position: | chr13:3654959-3654443 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 133 |
| Conread position: | 21-545 |
| Cow position: | chr13:30302419-30302945 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-573 |
| Cow position: | chr13:1593808-1593246 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 21-574 |
| Cow position: | chr13:30063506-30064035 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 88, 50 |
| Conread position: | 21-579 |
| Cow position: | chr13:4940433-4941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr13:15925036-15924469 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr13:32738461-32737907 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 80 |
| Conread position: | 23-574 |
| Cow position: | chr13:34692520-34693073 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 26 |
| Conread position: | 23-579 |
| Cow position: | chr13:2909095-2908535 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 125 |
| Conread position: | 23-586 |
| Cow position: | chr13:34143310-34142737 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 386 |
| Conread position: | 27-561 |
| Cow position: | chr13:15080816-15080317 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 279, 80 |
| Conread position: | 27-573 |
| Cow position: | chr13:34043010-34042460 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 27-579 |
| Cow position: | chr13:32986691-32986141 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 30-568 |
| Cow position: | chr13:33928190-33927666 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 30-579 |
| Cow position: | chr13:62328223-62327669 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 97 |
| Conread position: | 33-568 |
| Cow position: | chr13:22186357-22185831 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 349 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 36-573 |
| Cow position: | chr13:34187325-34186776 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 38-579 |
| Cow position: | chr13:31831973-31832515 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 109 |
| Conread position: | 47-373 |
| Cow position: | chr13:3058620-3058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 60, 108 |
| Conread position: | 64-202 |
| Cow position: | chr13:61951583-61951719 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 82-579 |
| Cow position: | chr13:34326268-34325760 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 131-580 |
| Cow position: | chr13:21130789-21131236 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 150-484 |
| Cow position: | chr13:2305979-2306325 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 114, 231 |
| Conread position: | 179-580 |
| Cow position: | chr13:13324262-13324665 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 68 |
| Conread position: | 197-495 |
| Cow position: | chr13:43801511-43801806 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 219-573 |
| Cow position: | chr13:49973227-49973593 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 276 |
| Conread position: | 224-574 |
| Cow position: | chr13:56730729-56730376 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 238 |
| Conread position: | 224-579 |
| Cow position: | chr13:23003966-23003601 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 270 |
| Conread position: | 301-579 |
| Cow position: | chr13:3567423-3567709 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 228, 11 |
| Conread position: | 312-566 |
| Cow position: | chr13:34767627-34767384 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 328-566 |
| Cow position: | chr13:35030214-35030459 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 29, 136 |
| Conread position: | 369-568 |
| Cow position: | chr13:10114944-10114749 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 114 |
| Conread position: | 369-574 |
| Cow position: | chr13:47230279-47230077 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 413-579 |
| Cow position: | chr13:4178900-4178736 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 433-579 |
| Cow position: | chr13:4483569-4483712 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.