Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-243
Cow position: chr14:44551258-44551500 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 147

Conread position: 1-432
Cow position: chr14:45160063-45160519 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 152

Conread position: 1-543
Cow position: chr14:44261887-44261338 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 353
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 89, 124

Conread position: 1-544
Cow position: chr14:44376638-44377185 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 81

Conread position: 1-573
Cow position: chr14:28994657-28994069 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 158

Conread position: 1-573
Cow position: chr14:45079740-45080305 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 154

Conread position: 1-574
Cow position: chr14:44225621-44226183 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 18

Conread position: 1-579
Cow position: chr14:14309859-14309284 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 75

Conread position: 1-579
Cow position: chr14:16274098-16273504 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 498

Conread position: 1-579
Cow position: chr14:17684602-17685187 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 130

Conread position: 1-579
Cow position: chr14:20781658-20782247 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 154

Conread position: 1-579
Cow position: chr14:45833366-45833945 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 25

Conread position: 1-586
Cow position: chr14:35387926-35387351 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 26

Conread position: 2-523
Cow position: chr14:40170479-40169951 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 188

Conread position: 2-568
Cow position: chr14:35928381-35928959 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 183

Conread position: 2-573
Cow position: chr14:41755078-41755629 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 89

Conread position: 3-579
Cow position: chr14:44685251-44685834 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 153

Conread position: 4-562
Cow position: chr14:11467806-11468360 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 65

Conread position: 4-606
Cow position: chr14:45850431-45851044 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 147

Conread position: 6-567
Cow position: chr14:13272471-13273031 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 142

Conread position: 7-277
Cow position: chr14:41085595-41085328 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 20

Conread position: 9-321
Cow position: chr14:34774814-34775122 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 10

Conread position: 9-573
Cow position: chr14:40338925-40339468 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 91

Conread position: 9-574
Cow position: chr14:22018613-22019179 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 410

Conread position: 10-529
Cow position: chr14:31607709-31607187 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 118

Conread position: 15-579
Cow position: chr14:13660775-13660197 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 482

Conread position: 16-574
Cow position: chr14:19329048-19328482 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 138

Conread position: 16-574
Cow position: chr14:38533077-38532506 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 5

Conread position: 17-234
Cow position: chr14:2283207-2283424 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 88, 131

Conread position: 17-235
Cow position: chr14:50134135-50134347 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 89, 22

Conread position: 17-579
Cow position: chr14:749795-750361 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 17-579
Cow position: chr14:9044784-9045357 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr14:23256576-23257150 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 405

Conread position: 17-579
Cow position: chr14:30585717-30585160 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 126

Conread position: 17-579
Cow position: chr14:45672824-45672253 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 114

Conread position: 18-579
Cow position: chr14:17492231-17491665 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 109

Conread position: 21-569
Cow position: chr14:22032459-22031906 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr14:11154930-11154380 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 21-573
Cow position: chr14:13302254-13302815 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-574
Cow position: chr14:30597153-30596598 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 135

Conread position: 21-574
Cow position: chr14:37223125-37223688 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr14:5528290-5528853 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr14:17001824-17001263 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 41

Conread position: 21-579
Cow position: chr14:29048671-29048112 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 83

Conread position: 21-579
Cow position: chr14:50109803-50110357 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 76

Conread position: 23-579
Cow position: chr14:36967483-36968046 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 253

Conread position: 23-585
Cow position: chr14:47623796-47624357 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 101

Conread position: 23-586
Cow position: chr14:44130153-44130713 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 74

Conread position: 24-321
Cow position: chr14:44780679-44780389 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 42

Conread position: 24-550
Cow position: chr14:44783019-44782498 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 42

Conread position: 27-579
Cow position: chr14:7471605-7472165 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 127

Conread position: 27-579
Cow position: chr14:43552650-43553212 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 94

Conread position: 27-579
Cow position: chr14:45712750-45712195 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 99

Conread position: 27-579
Cow position: chr14:48255083-48254524 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 127

Conread position: 28-525
Cow position: chr14:33235234-33235720 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 323
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 79, 30

Conread position: 28-571
Cow position: chr14:23529762-23529239 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 355
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 237, 62

Conread position: 28-579
Cow position: chr14:45767239-45767793 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 30

Conread position: 29-579
Cow position: chr14:47589109-47589662 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 358
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 78, 98

Conread position: 30-199
Cow position: chr14:42404180-42404347 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 19, 58

Conread position: 30-574
Cow position: chr14:23690994-23690443 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 374

Conread position: 36-557
Cow position: chr14:46083867-46084391 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 59

Conread position: 36-579
Cow position: chr14:48406417-48405897 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 346
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 71, 50

Conread position: 38-579
Cow position: chr14:44856185-44855636 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 110

Conread position: 40-186
Cow position: chr14:45304265-45304121 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 60

Conread position: 50-574
Cow position: chr14:13326857-13326355 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 338
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 57, 98

Conread position: 52-579
Cow position: chr14:7831280-7830749 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 53-579
Cow position: chr14:16920427-16919899 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 101

Conread position: 67-579
Cow position: chr14:33394513-33393985 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 44

Conread position: 82-563
Cow position: chr14:27992999-27992533 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 37

Conread position: 87-579
Cow position: chr14:44421847-44422345 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 89-568
Cow position: chr14:45205366-45205858 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 42

Conread position: 106-410
Cow position: chr14:12608528-12608833 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 123, 24

Conread position: 108-574
Cow position: chr14:42151632-42152109 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 384

Conread position: 116-579
Cow position: chr14:43034556-43034096 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 316
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 11

Conread position: 138-573
Cow position: chr14:34924895-34925336 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 286
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 67, 9

Conread position: 176-481
Cow position: chr14:13622232-13621915 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 19

Conread position: 182-566
Cow position: chr14:45303976-45303586 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 214

Conread position: 207-579
Cow position: chr14:45029704-45029332 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 285

Conread position: 219-579
Cow position: chr14:23901380-23901009 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 275

Conread position: 223-579
Cow position: chr14:2283764-2284130 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 226

Conread position: 232-574
Cow position: chr14:15277138-15276794 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 232-579
Cow position: chr14:46464509-46464864 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 235-420
Cow position: chr14:48824058-48824248 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 37, 8

Conread position: 235-563
Cow position: chr14:50134514-50134845 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 10

Conread position: 235-574
Cow position: chr14:23260488-23260137 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 233
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 34, 26

Conread position: 254-550
Cow position: chr14:29265498-29265196 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 18, 34

Conread position: 283-579
Cow position: chr14:13778456-13778746 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 198

Conread position: 283-579
Cow position: chr14:41085293-41084994 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 206

Conread position: 299-566
Cow position: chr14:13864575-13864304 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 187

Conread position: 312-579
Cow position: chr14:41407346-41407612 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 22, 171

Conread position: 316-540
Cow position: chr14:9102565-9102345 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 155

Conread position: 328-568
Cow position: chr14:31887219-31887452 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 87

Conread position: 328-568
Cow position: chr14:45916960-45917198 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 5

Conread position: 329-568
Cow position: chr14:44287707-44287470 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 151, 0

Conread position: 333-579
Cow position: chr14:37414341-37414095 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 95, 173

Conread position: 343-579
Cow position: chr14:13480170-13479943 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 368-579
Cow position: chr14:22242465-22242672 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 74

Conread position: 369-563
Cow position: chr14:19619809-19619995 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 157
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 34, 0

Conread position: 389-568
Cow position: chr14:44551488-44551662 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 62, 0

Conread position: 397-579
Cow position: chr14:5511433-5511613 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 85

Conread position: 403-573
Cow position: chr14:34775148-34775314 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 439-586
Cow position: chr14:42198245-42198387 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.