Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-534
Cow position: chr16:1430081-1430623 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 157

Conread position: 1-568
Cow position: chr16:25084483-25085055 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 40

Conread position: 1-568
Cow position: chr16:25157357-25156788 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 20

Conread position: 1-571
Cow position: chr16:2484283-2483705 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 152

Conread position: 1-573
Cow position: chr16:25440468-25441057 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 499

Conread position: 1-573
Cow position: chr16:25458621-25458032 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 499

Conread position: 1-574
Cow position: chr16:1568593-1568014 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 83

Conread position: 1-574
Cow position: chr16:9929410-9929980 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 85

Conread position: 1-579
Cow position: chr16:12539067-12538479 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 153

Conread position: 1-579
Cow position: chr16:42051484-42050942 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 113

Conread position: 2-454
Cow position: chr16:23670725-23670274 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 301
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 38, 24

Conread position: 2-568
Cow position: chr16:2239870-2239298 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 44

Conread position: 2-573
Cow position: chr16:25340830-25341404 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 152

Conread position: 2-574
Cow position: chr16:51685306-51685877 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 148

Conread position: 3-567
Cow position: chr16:15565608-15566183 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 153

Conread position: 3-579
Cow position: chr16:43898409-43897823 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 110

Conread position: 4-542
Cow position: chr16:18688259-18687717 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 91

Conread position: 6-250
Cow position: chr16:14422582-14422821 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 6-250
Cow position: chr16:15369304-15369540 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 102

Conread position: 6-308
Cow position: chr16:29031781-29032085 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 58

Conread position: 6-361
Cow position: chr16:9776993-9777351 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 144

Conread position: 6-579
Cow position: chr16:15491577-15492154 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 14

Conread position: 6-579
Cow position: chr16:31593043-31592459 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 149

Conread position: 7-510
Cow position: chr16:29676438-29675934 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 9-360
Cow position: chr16:19713979-19713620 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 18

Conread position: 9-414
Cow position: chr16:16687738-16688151 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 53

Conread position: 10-579
Cow position: chr16:7905513-7906064 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 17

Conread position: 11-419
Cow position: chr16:49236241-49235826 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 36

Conread position: 12-574
Cow position: chr16:26662620-26663189 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 121

Conread position: 17-538
Cow position: chr16:6942496-6943028 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-538
Cow position: chr16:32605701-32606233 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-543
Cow position: chr16:5888376-5888875 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 352
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 232, 81

Conread position: 17-579
Cow position: chr16:4303596-4303032 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 112

Conread position: 17-579
Cow position: chr16:5660741-5661295 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 17-579
Cow position: chr16:5918357-5918928 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 133

Conread position: 17-579
Cow position: chr16:28171485-28170918 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 48

Conread position: 20-209
Cow position: chr16:39818501-39818692 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 87, 0

Conread position: 20-574
Cow position: chr16:20255432-20254871 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 130

Conread position: 21-210
Cow position: chr16:14666910-14666721 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 85, 128

Conread position: 21-355
Cow position: chr16:7676817-7676474 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 129

Conread position: 21-540
Cow position: chr16:28438893-28438384 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 330
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 110

Conread position: 21-543
Cow position: chr16:2728435-2727892 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 21-549
Cow position: chr16:28472218-28471693 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 133

Conread position: 21-573
Cow position: chr16:408154-407592 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr16:15183684-15184242 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr16:8817227-8816659 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr16:10437135-10437688 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr16:23253622-23253062 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 59

Conread position: 21-579
Cow position: chr16:29045909-29046467 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 86

Conread position: 21-579
Cow position: chr16:40297297-40296733 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 23-573
Cow position: chr16:6549641-6549085 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 125

Conread position: 27-453
Cow position: chr16:24881803-24881369 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 127

Conread position: 28-467
Cow position: chr16:9457415-9457841 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 291
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 23

Conread position: 28-561
Cow position: chr16:31376342-31375853 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 366
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 79, 101

Conread position: 28-568
Cow position: chr16:55111958-55111411 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 353
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 71, 57

Conread position: 30-580
Cow position: chr16:11052060-11052608 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 117

Conread position: 31-311
Cow position: chr16:32935042-32935308 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 76, 59

Conread position: 31-536
Cow position: chr16:54647222-54647719 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 59

Conread position: 32-574
Cow position: chr16:42740527-42739983 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 9

Conread position: 32-579
Cow position: chr16:10204526-10203985 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 122

Conread position: 34-579
Cow position: chr16:31650-32183 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 114

Conread position: 38-557
Cow position: chr16:36282291-36282827 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 112

Conread position: 39-568
Cow position: chr16:36232701-36232176 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 73

Conread position: 41-579
Cow position: chr16:49257673-49257138 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 114

Conread position: 50-574
Cow position: chr16:23982218-23982751 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 104

Conread position: 51-495
Cow position: chr16:52815707-52815275 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 63

Conread position: 52-579
Cow position: chr16:27734896-27734357 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 102

Conread position: 135-579
Cow position: chr16:41559667-41560103 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 288
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 86

Conread position: 137-573
Cow position: chr16:2411975-2411530 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 16

Conread position: 140-579
Cow position: chr16:10808167-10808595 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 6

Conread position: 147-526
Cow position: chr16:54180685-54180292 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 257
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 285

Conread position: 148-567
Cow position: chr16:16276502-16276074 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 243

Conread position: 159-536
Cow position: chr16:11111918-11111541 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 48, 34

Conread position: 178-568
Cow position: chr16:36362313-36361929 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 167

Conread position: 179-573
Cow position: chr16:25187677-25188082 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 315

Conread position: 185-563
Cow position: chr16:56551170-56551554 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 166

Conread position: 199-586
Cow position: chr16:39820694-39821084 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 192

Conread position: 222-573
Cow position: chr16:335383-335730 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 12

Conread position: 223-579
Cow position: chr16:836110-836474 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 189

Conread position: 232-579
Cow position: chr16:34529417-34529766 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 151

Conread position: 235-579
Cow position: chr16:5483418-5483768 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 12

Conread position: 240-533
Cow position: chr16:44388479-44388179 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 184

Conread position: 243-568
Cow position: chr16:5651855-5652173 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 225
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 109

Conread position: 255-574
Cow position: chr16:14666715-14666389 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 235

Conread position: 312-573
Cow position: chr16:16029966-16030225 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 21, 96

Conread position: 326-550
Cow position: chr16:32935354-32935575 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 368-571
Cow position: chr16:9777320-9777522 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 90

Conread position: 368-573
Cow position: chr16:33611843-33611642 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 113, 0

Conread position: 371-579
Cow position: chr16:53045592-53045799 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 120
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 121, 115

Conread position: 377-579
Cow position: chr16:19713639-19713441 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 104, 0

Conread position: 390-560
Cow position: chr16:44966428-44966598 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 100

Conread position: 430-579
Cow position: chr16:49235848-49235705 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 0

Show alignments to all cow chromosomes.