Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-452
Cow position: chr17:2578995-2579455 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 112

Conread position: 1-535
Cow position: chr17:15322261-15322788 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 152

Conread position: 1-573
Cow position: chr17:2587750-2588323 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 295

Conread position: 1-579
Cow position: chr17:4081081-4081655 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 288

Conread position: 1-579
Cow position: chr17:24780482-24781071 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 147

Conread position: 2-248
Cow position: chr17:6259139-6259383 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 103, 147

Conread position: 4-187
Cow position: chr17:1945614-1945798 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 44

Conread position: 4-579
Cow position: chr17:19269923-19269343 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 33

Conread position: 5-579
Cow position: chr17:15435233-15435814 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 125

Conread position: 6-530
Cow position: chr17:22430040-22429509 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 90

Conread position: 6-566
Cow position: chr17:4059546-4060110 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 142

Conread position: 7-248
Cow position: chr17:22131384-22131623 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 100, 20

Conread position: 7-496
Cow position: chr17:1284313-1283847 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 20

Conread position: 16-245
Cow position: chr17:31200617-31200387 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 16-573
Cow position: chr17:13929123-13929685 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 115

Conread position: 17-210
Cow position: chr17:6119601-6119794 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 90, 126

Conread position: 17-405
Cow position: chr17:11782821-11783222 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-568
Cow position: chr17:15157502-15156952 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 17-573
Cow position: chr17:2249131-2248567 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-573
Cow position: chr17:14217574-14217006 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr17:228845-228285 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 109

Conread position: 17-579
Cow position: chr17:1383361-1382791 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 131

Conread position: 17-579
Cow position: chr17:2261567-2262129 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 17-579
Cow position: chr17:8208560-8209129 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 132

Conread position: 17-579
Cow position: chr17:9653999-9653433 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr17:15143910-15143344 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 63

Conread position: 17-579
Cow position: chr17:20666276-20665703 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 131

Conread position: 17-579
Cow position: chr17:22160366-22160939 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr17:24633407-24633977 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 114

Conread position: 20-456
Cow position: chr17:15370534-15370974 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 44

Conread position: 21-408
Cow position: chr17:40803847-40804251 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 141

Conread position: 21-572
Cow position: chr17:16860115-16859540 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 492

Conread position: 21-573
Cow position: chr17:14893613-14894170 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 25

Conread position: 21-573
Cow position: chr17:25737118-25737680 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-574
Cow position: chr17:3643381-3642818 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 72

Conread position: 21-574
Cow position: chr17:18104226-18103662 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 23-247
Cow position: chr17:20088291-20088073 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 85, 39

Conread position: 23-568
Cow position: chr17:14326033-14325490 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 24

Conread position: 23-568
Cow position: chr17:44853467-44852920 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 54

Conread position: 23-579
Cow position: chr17:2286833-2287409 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 125

Conread position: 23-579
Cow position: chr17:27345264-27345822 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 125

Conread position: 27-212
Cow position: chr17:181077-181263 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 79, 121

Conread position: 27-279
Cow position: chr17:32024735-32024479 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 121

Conread position: 27-432
Cow position: chr17:39933148-39933561 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 154

Conread position: 27-579
Cow position: chr17:43987980-43988556 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 484

Conread position: 28-586
Cow position: chr17:20401137-20401703 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 42

Conread position: 31-240
Cow position: chr17:55215-55009 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 116, 0

Conread position: 31-579
Cow position: chr17:16889595-16890147 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 63

Conread position: 32-573
Cow position: chr17:11088255-11087707 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 121

Conread position: 33-579
Cow position: chr17:249395-249962 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 115

Conread position: 34-572
Cow position: chr17:6002546-6002001 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 360
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 72, 168

Conread position: 36-573
Cow position: chr17:13857305-13856752 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 113

Conread position: 37-554
Cow position: chr17:152989-152484 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 96

Conread position: 37-579
Cow position: chr17:6089691-6089138 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 37-579
Cow position: chr17:35591695-35592236 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 32

Conread position: 38-579
Cow position: chr17:23857579-23857011 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 119

Conread position: 41-469
Cow position: chr17:28109570-28110002 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 102

Conread position: 65-574
Cow position: chr17:2173381-2173896 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 82-557
Cow position: chr17:4294899-4295351 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 61

Conread position: 93-385
Cow position: chr17:2737905-2738209 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 65

Conread position: 96-568
Cow position: chr17:15849930-15850408 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 16

Conread position: 99-568
Cow position: chr17:1879624-1880106 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 55

Conread position: 149-568
Cow position: chr17:42264109-42264515 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 88

Conread position: 153-574
Cow position: chr17:20183640-20183213 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 288

Conread position: 158-579
Cow position: chr17:23324850-23324431 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 143

Conread position: 178-560
Cow position: chr17:1946587-1946979 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 249

Conread position: 178-574
Cow position: chr17:18185913-18185514 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 195

Conread position: 235-573
Cow position: chr17:6259518-6259862 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 10

Conread position: 235-574
Cow position: chr17:22131907-22132248 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 236-520
Cow position: chr17:20088056-20087768 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 7

Conread position: 299-574
Cow position: chr17:2555866-2556140 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 184

Conread position: 299-574
Cow position: chr17:18027014-18026739 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 184

Conread position: 379-579
Cow position: chr17:2579457-2579648 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 382-579
Cow position: chr17:181191-181386 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 113
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 405-570
Cow position: chr17:31199792-31199631 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 77

Conread position: 416-572
Cow position: chr17:39933519-39933676 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 71

Conread position: 422-579
Cow position: chr17:40804685-40804839 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 8, 0

Show alignments to all cow chromosomes.