Cow genome map
Conread name: | LyN1-MLN01F050049 |
Conread position: | 1-452 |
Cow position: | chr17:2578995-2579455 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 112 |
Conread position: | 1-535 |
Cow position: | chr17:15322261-15322788 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 152 |
Conread position: | 1-573 |
Cow position: | chr17:2587750-2588323 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 295 |
Conread position: | 1-579 |
Cow position: | chr17:4081081-4081655 (view UCSC Genome Browser custom track) |
Alignm length: | 595 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 288 |
Conread position: | 1-579 |
Cow position: | chr17:24780482-24781071 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 147 |
Conread position: | 2-248 |
Cow position: | chr17:6259139-6259383 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 177 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 103, 147 |
Conread position: | 4-187 |
Cow position: | chr17:1945614-1945798 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 142 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 19, 44 |
Conread position: | 4-579 |
Cow position: | chr17:19269923-19269343 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 33 |
Conread position: | 5-579 |
Cow position: | chr17:15435233-15435814 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 125 |
Conread position: | 6-530 |
Cow position: | chr17:22430040-22429509 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 90 |
Conread position: | 6-566 |
Cow position: | chr17:4059546-4060110 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 142 |
Conread position: | 7-248 |
Cow position: | chr17:22131384-22131623 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 177 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 100, 20 |
Conread position: | 7-496 |
Cow position: | chr17:1284313-1283847 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 20 |
Conread position: | 16-245 |
Cow position: | chr17:31200617-31200387 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 149 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 92, 0 |
Conread position: | 16-573 |
Cow position: | chr17:13929123-13929685 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 115 |
Conread position: | 17-210 |
Cow position: | chr17:6119601-6119794 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 141 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 90, 126 |
Conread position: | 17-405 |
Cow position: | chr17:11782821-11783222 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 131 |
Conread position: | 17-568 |
Cow position: | chr17:15157502-15156952 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 110 |
Conread position: | 17-573 |
Cow position: | chr17:2249131-2248567 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 131 |
Conread position: | 17-573 |
Cow position: | chr17:14217574-14217006 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 131 |
Conread position: | 17-579 |
Cow position: | chr17:228845-228285 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 109 |
Conread position: | 17-579 |
Cow position: | chr17:1383361-1382791 (view UCSC Genome Browser custom track) |
Alignm length: | 574 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 131 |
Conread position: | 17-579 |
Cow position: | chr17:2261567-2262129 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 110 |
Conread position: | 17-579 |
Cow position: | chr17:8208560-8209129 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 132 |
Conread position: | 17-579 |
Cow position: | chr17:9653999-9653433 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 131 |
Conread position: | 17-579 |
Cow position: | chr17:15143910-15143344 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 63 |
Conread position: | 17-579 |
Cow position: | chr17:20666276-20665703 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 131 |
Conread position: | 17-579 |
Cow position: | chr17:22160366-22160939 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 131 |
Conread position: | 17-579 |
Cow position: | chr17:24633407-24633977 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 114 |
Conread position: | 20-456 |
Cow position: | chr17:15370534-15370974 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 44 |
Conread position: | 21-408 |
Cow position: | chr17:40803847-40804251 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 141 |
Conread position: | 21-572 |
Cow position: | chr17:16860115-16859540 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 492 |
Conread position: | 21-573 |
Cow position: | chr17:14893613-14894170 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 25 |
Conread position: | 21-573 |
Cow position: | chr17:25737118-25737680 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 133 |
Conread position: | 21-574 |
Cow position: | chr17:3643381-3642818 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 72 |
Conread position: | 21-574 |
Cow position: | chr17:18104226-18103662 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 133 |
Conread position: | 23-247 |
Cow position: | chr17:20088291-20088073 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 167 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 85, 39 |
Conread position: | 23-568 |
Cow position: | chr17:14326033-14325490 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 24 |
Conread position: | 23-568 |
Cow position: | chr17:44853467-44852920 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 54 |
Conread position: | 23-579 |
Cow position: | chr17:2286833-2287409 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 125 |
Conread position: | 23-579 |
Cow position: | chr17:27345264-27345822 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 125 |
Conread position: | 27-212 |
Cow position: | chr17:181077-181263 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 105 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 79, 121 |
Conread position: | 27-279 |
Cow position: | chr17:32024735-32024479 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 121 |
Conread position: | 27-432 |
Cow position: | chr17:39933148-39933561 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 154 |
Conread position: | 27-579 |
Cow position: | chr17:43987980-43988556 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 484 |
Conread position: | 28-586 |
Cow position: | chr17:20401137-20401703 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 42 |
Conread position: | 31-240 |
Cow position: | chr17:55215-55009 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 151 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 31-579 |
Cow position: | chr17:16889595-16890147 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 63 |
Conread position: | 32-573 |
Cow position: | chr17:11088255-11087707 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 121 |
Conread position: | 33-579 |
Cow position: | chr17:249395-249962 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 115 |
Conread position: | 34-572 |
Cow position: | chr17:6002546-6002001 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 360 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 72, 168 |
Conread position: | 36-573 |
Cow position: | chr17:13857305-13856752 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 113 |
Conread position: | 37-554 |
Cow position: | chr17:152989-152484 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 96 |
Conread position: | 37-579 |
Cow position: | chr17:6089691-6089138 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 15 |
Conread position: | 37-579 |
Cow position: | chr17:35591695-35592236 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 32 |
Conread position: | 38-579 |
Cow position: | chr17:23857579-23857011 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 119 |
Conread position: | 41-469 |
Cow position: | chr17:28109570-28110002 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 102 |
Conread position: | 65-574 |
Cow position: | chr17:2173381-2173896 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 19 |
Conread position: | 82-557 |
Cow position: | chr17:4294899-4295351 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 61 |
Conread position: | 93-385 |
Cow position: | chr17:2737905-2738209 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 218 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 14, 65 |
Conread position: | 96-568 |
Cow position: | chr17:15849930-15850408 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 16 |
Conread position: | 99-568 |
Cow position: | chr17:1879624-1880106 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 55 |
Conread position: | 149-568 |
Cow position: | chr17:42264109-42264515 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 88 |
Conread position: | 153-574 |
Cow position: | chr17:20183640-20183213 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 288 |
Conread position: | 158-579 |
Cow position: | chr17:23324850-23324431 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 143 |
Conread position: | 178-560 |
Cow position: | chr17:1946587-1946979 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 249 |
Conread position: | 178-574 |
Cow position: | chr17:18185913-18185514 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 195 |
Conread position: | 235-573 |
Cow position: | chr17:6259518-6259862 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 10 |
Conread position: | 235-574 |
Cow position: | chr17:22131907-22132248 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 9 |
Conread position: | 236-520 |
Cow position: | chr17:20088056-20087768 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 7 |
Conread position: | 299-574 |
Cow position: | chr17:2555866-2556140 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 184 |
Conread position: | 299-574 |
Cow position: | chr17:18027014-18026739 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 184 |
Conread position: | 379-579 |
Cow position: | chr17:2579457-2579648 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 148 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 382-579 |
Cow position: | chr17:181191-181386 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 113 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 405-570 |
Cow position: | chr17:31199792-31199631 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 134 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 21, 77 |
Conread position: | 416-572 |
Cow position: | chr17:39933519-39933676 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 119 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 10, 71 |
Conread position: | 422-579 |
Cow position: | chr17:40804685-40804839 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 123 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.