Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-189 |
| Cow position: | chr18:29236417-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 13, 151 |
| Conread position: | 1-553 |
| Cow position: | chr18:33335516-33336072 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 1-572 |
| Cow position: | chr18:28974259-28973679 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 1-579 |
| Cow position: | chr18:27838659-27838085 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 80 |
| Conread position: | 1-579 |
| Cow position: | chr18:41841187-41840594 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 2-573 |
| Cow position: | chr18:54172200-54171635 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 2-579 |
| Cow position: | chr18:11275445-11274875 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 125 |
| Conread position: | 2-579 |
| Cow position: | chr18:51480482-51481070 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 3-405 |
| Cow position: | chr18:45958345-45958742 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 6-573 |
| Cow position: | chr18:14415626-14416201 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 148 |
| Conread position: | 6-579 |
| Cow position: | chr18:54024708-54024129 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 142 |
| Conread position: | 7-579 |
| Cow position: | chr18:33358516-33359096 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 7-579 |
| Cow position: | chr18:35335139-35335710 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 14-575 |
| Cow position: | chr18:1520782-1521355 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 16-589 |
| Cow position: | chr18:32293429-32294008 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 129 |
| Conread position: | 17-173 |
| Cow position: | chr18:23746314-23746158 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 17-410 |
| Cow position: | chr18:51660082-51660481 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 110 |
| Conread position: | 17-505 |
| Cow position: | chr18:44621415-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 479 |
| Conread position: | 17-573 |
| Cow position: | chr18:47741676-47742243 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-579 |
| Cow position: | chr18:16078363-16078948 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 17-579 |
| Cow position: | chr18:19352036-19352616 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 484 |
| Conread position: | 17-579 |
| Cow position: | chr18:33953909-33953338 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 20-563 |
| Cow position: | chr18:51257646-51258198 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 21-250 |
| Cow position: | chr18:14129957-14130185 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 21-548 |
| Cow position: | chr18:9187100-9186568 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 21-573 |
| Cow position: | chr18:36507995-36508557 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr18:23797313-23797878 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 136 |
| Conread position: | 21-579 |
| Cow position: | chr18:37504728-37505295 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 118 |
| Conread position: | 22-573 |
| Cow position: | chr18:16176943-16176389 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 22-574 |
| Cow position: | chr18:47719906-47719358 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 126 |
| Conread position: | 23-189 |
| Cow position: | chr18:53785144-53785315 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 23-579 |
| Cow position: | chr18:2020017-2019454 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 23-579 |
| Cow position: | chr18:51310251-51310816 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 27-355 |
| Cow position: | chr18:25349708-25350048 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 27-567 |
| Cow position: | chr18:18897181-18897713 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 350 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 27-579 |
| Cow position: | chr18:55089257-55088694 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 120 |
| Conread position: | 28-267 |
| Cow position: | chr18:54002173-54002404 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 208, 71 |
| Conread position: | 28-550 |
| Cow position: | chr18:29945892-29946383 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 344 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 28-586 |
| Cow position: | chr18:33268513-33269063 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 30-568 |
| Cow position: | chr18:23944700-23944155 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 30-573 |
| Cow position: | chr18:37599858-37599317 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 30-579 |
| Cow position: | chr18:43147254-43146695 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 463 |
| Conread position: | 30-579 |
| Cow position: | chr18:48221550-48222110 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 31-546 |
| Cow position: | chr18:29899999-29900503 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 31-579 |
| Cow position: | chr18:22602159-22602718 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 100 |
| Conread position: | 38-579 |
| Cow position: | chr18:39748263-39748809 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 39-567 |
| Cow position: | chr18:16660322-16659799 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 40-512 |
| Cow position: | chr18:17992880-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 108 |
| Conread position: | 41-579 |
| Cow position: | chr18:40478067-40478614 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 66 |
| Conread position: | 45-387 |
| Cow position: | chr18:32651682-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 104 |
| Conread position: | 52-465 |
| Cow position: | chr18:27986722-27987146 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 65-355 |
| Cow position: | chr18:19540164-19539866 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 142-540 |
| Cow position: | chr18:16361439-16361041 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 142-574 |
| Cow position: | chr18:16533768-16534204 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 147-579 |
| Cow position: | chr18:6869467-6869028 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 268 |
| Conread position: | 147-579 |
| Cow position: | chr18:43200854-43201285 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 178-579 |
| Cow position: | chr18:53785660-53786070 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 226 |
| Conread position: | 181-579 |
| Cow position: | chr18:51689449-51689855 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 244 |
| Conread position: | 224-567 |
| Cow position: | chr18:2887157-2886802 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 271 |
| Conread position: | 240-568 |
| Cow position: | chr18:29236703-29237028 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 241-560 |
| Cow position: | chr18:54044815-54044496 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 207 |
| Conread position: | 245-579 |
| Cow position: | chr18:51341576-51341917 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 245 |
| Conread position: | 312-579 |
| Cow position: | chr18:14130353-14130615 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 312-579 |
| Cow position: | chr18:52650895-52651150 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 328-606 |
| Cow position: | chr18:114376-114651 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 362-573 |
| Cow position: | chr18:25350680-25350890 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 368-544 |
| Cow position: | chr18:8312284-8312457 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 368-574 |
| Cow position: | chr18:51463053-51462852 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 368-579 |
| Cow position: | chr18:24040711-24040502 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 369-579 |
| Cow position: | chr18:19539557-19539349 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 377-579 |
| Cow position: | chr18:32652251-32652450 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 416-579 |
| Cow position: | chr18:16843267-16843107 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 425-579 |
| Cow position: | chr18:18089394-18089242 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.