Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-265 |
| Cow position: | chr19:6553054-6553306 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 241, 106 |
| Conread position: | 1-339 |
| Cow position: | chr19:42649420-42649079 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 1-561 |
| Cow position: | chr19:55078392-55078963 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 153 |
| Conread position: | 1-568 |
| Cow position: | chr19:34069-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 193 |
| Conread position: | 1-572 |
| Cow position: | chr19:33941256-33941838 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 155 |
| Conread position: | 1-573 |
| Cow position: | chr19:76588-76040 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 1-573 |
| Cow position: | chr19:39390169-39390737 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 89 |
| Conread position: | 1-574 |
| Cow position: | chr19:32223766-32223219 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 1-579 |
| Cow position: | chr19:359850-359274 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 389 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 130 |
| Conread position: | 1-579 |
| Cow position: | chr19:28581992-28581424 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 79 |
| Conread position: | 2-510 |
| Cow position: | chr19:29209214-29209726 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 2-566 |
| Cow position: | chr19:40888002-40887429 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 154 |
| Conread position: | 2-579 |
| Cow position: | chr19:4385135-4385715 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 3-189 |
| Cow position: | chr19:544243-544056 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 14, 146 |
| Conread position: | 3-579 |
| Cow position: | chr19:261079-261679 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 6-233 |
| Cow position: | chr19:33872895-33873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 100, 119 |
| Conread position: | 7-410 |
| Cow position: | chr19:4252702-4252291 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 7-579 |
| Cow position: | chr19:31341379-31341957 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 10-579 |
| Cow position: | chr19:171087-170512 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 23 |
| Conread position: | 11-549 |
| Cow position: | chr19:20125290-20125808 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 58 |
| Conread position: | 17-354 |
| Cow position: | chr19:685517-685855 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 87, 110 |
| Conread position: | 17-468 |
| Cow position: | chr19:32193246-32193704 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 73 |
| Conread position: | 17-574 |
| Cow position: | chr19:28592945-28593507 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 45 |
| Conread position: | 17-579 |
| Cow position: | chr19:37570-38130 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 110 |
| Conread position: | 17-579 |
| Cow position: | chr19:772272-772834 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-579 |
| Cow position: | chr19:32212398-32211838 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 17-579 |
| Cow position: | chr19:32244342-32244919 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 138 |
| Conread position: | 17-579 |
| Cow position: | chr19:43143378-43143951 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 477 |
| Conread position: | 18-573 |
| Cow position: | chr19:35978931-35979494 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 20-567 |
| Cow position: | chr19:32665197-32665753 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 129 |
| Conread position: | 21-566 |
| Cow position: | chr19:40852764-40852216 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 133 |
| Conread position: | 21-568 |
| Cow position: | chr19:7450327-7449800 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 352 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 21-573 |
| Cow position: | chr19:171877-172440 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 21-573 |
| Cow position: | chr19:203629-204190 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 119 |
| Conread position: | 21-573 |
| Cow position: | chr19:10672640-10672077 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr19:439980-439422 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 22-566 |
| Cow position: | chr19:378216-377680 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 22-579 |
| Cow position: | chr19:416316-416896 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 23-202 |
| Cow position: | chr19:801659-801838 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 135 |
| Conread position: | 23-579 |
| Cow position: | chr19:1031780-1032310 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 115 |
| Conread position: | 23-579 |
| Cow position: | chr19:30371944-30372509 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 125 |
| Conread position: | 23-579 |
| Cow position: | chr19:42299852-42299261 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 384 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 87, 368 |
| Conread position: | 27-354 |
| Cow position: | chr19:52152577-52152249 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 27-357 |
| Cow position: | chr19:35376238-35376574 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 27-579 |
| Cow position: | chr19:7341744-7342303 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 198 |
| Conread position: | 30-256 |
| Cow position: | chr19:350899-350664 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 30-309 |
| Cow position: | chr19:32238180-32237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 204, 41 |
| Conread position: | 30-471 |
| Cow position: | chr19:4533068-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 120 |
| Conread position: | 36-568 |
| Cow position: | chr19:30754856-30755404 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 40-573 |
| Cow position: | chr19:39688235-39688758 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 94 |
| Conread position: | 41-573 |
| Cow position: | chr19:7487999-7488542 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 113 |
| Conread position: | 92-557 |
| Cow position: | chr19:39546374-39546840 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 38 |
| Conread position: | 92-579 |
| Cow position: | chr19:32202495-32202974 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 108-579 |
| Cow position: | chr19:893848-893380 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 45 |
| Conread position: | 178-482 |
| Cow position: | chr19:27052940-27052629 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 195-468 |
| Cow position: | chr19:28376371-28376644 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 48, 116 |
| Conread position: | 197-560 |
| Cow position: | chr19:543785-543410 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 234-563 |
| Cow position: | chr19:33873311-33873645 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 247-574 |
| Cow position: | chr19:350387-350061 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 268-573 |
| Cow position: | chr19:6553531-6553832 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 299-566 |
| Cow position: | chr19:32237725-32237460 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 368-579 |
| Cow position: | chr19:20104739-20104948 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 164, 20 |
| Conread position: | 368-579 |
| Cow position: | chr19:52151805-52151595 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 147, 113 |
| Conread position: | 370-587 |
| Cow position: | chr19:687093-687310 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 211, 111 |
| Conread position: | 379-579 |
| Cow position: | chr19:35376826-35377022 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 402-572 |
| Cow position: | chr19:352933-352765 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 444-579 |
| Cow position: | chr19:42649010-42648877 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.