Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-183 |
| Cow position: | chr20:35118851-35119032 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 1-232 |
| Cow position: | chr20:29947785-29948020 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 151 |
| Conread position: | 1-295 |
| Cow position: | chr20:11276672-11276394 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 1-568 |
| Cow position: | chr20:15064361-15064947 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 420 |
| Conread position: | 1-573 |
| Cow position: | chr20:22206135-22206722 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 399 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 1-573 |
| Cow position: | chr20:27868797-27869383 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 1-574 |
| Cow position: | chr20:13762509-13763091 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 153 |
| Conread position: | 1-579 |
| Cow position: | chr20:15291647-15292202 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 152 |
| Conread position: | 2-529 |
| Cow position: | chr20:21393176-21393706 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 147 |
| Conread position: | 2-573 |
| Cow position: | chr20:25851385-25850805 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 6-579 |
| Cow position: | chr20:5534549-5535129 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 149 |
| Conread position: | 7-574 |
| Cow position: | chr20:3252527-3251947 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 16-178 |
| Cow position: | chr20:19006009-19005849 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 16-568 |
| Cow position: | chr20:18315961-18315414 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 130 |
| Conread position: | 17-235 |
| Cow position: | chr20:31124025-31124243 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 91, 138 |
| Conread position: | 17-579 |
| Cow position: | chr20:822377-822959 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 486 |
| Conread position: | 17-579 |
| Cow position: | chr20:19437584-19438139 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 18-536 |
| Cow position: | chr20:2676740-2677264 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 147 |
| Conread position: | 21-248 |
| Cow position: | chr20:8004889-8004662 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 21-452 |
| Cow position: | chr20:10846452-10846010 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 21-566 |
| Cow position: | chr20:23470037-23469480 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-569 |
| Cow position: | chr20:12439136-12438579 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 21-569 |
| Cow position: | chr20:30683962-30684517 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-573 |
| Cow position: | chr20:7116847-7116283 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr20:23798506-23799078 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 122 |
| Conread position: | 23-304 |
| Cow position: | chr20:3032563-3032840 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 121 |
| Conread position: | 23-488 |
| Cow position: | chr20:4800019-4799548 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 124 |
| Conread position: | 23-566 |
| Cow position: | chr20:8313805-8313261 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 23-579 |
| Cow position: | chr20:5483819-5484381 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 27-579 |
| Cow position: | chr20:5561086-5560523 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 27-581 |
| Cow position: | chr20:28160410-28160964 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 31-210 |
| Cow position: | chr20:13681451-13681279 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 117 |
| Conread position: | 31-579 |
| Cow position: | chr20:24614183-24614726 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 117 |
| Conread position: | 32-574 |
| Cow position: | chr20:15098234-15097690 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 36-483 |
| Cow position: | chr20:10102904-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 37-579 |
| Cow position: | chr20:3270362-3270896 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 111 |
| Conread position: | 41-414 |
| Cow position: | chr20:28593394-28593776 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 41-579 |
| Cow position: | chr20:28565957-28565404 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 113 |
| Conread position: | 42-568 |
| Cow position: | chr20:31379227-31378705 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 339 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 44-483 |
| Cow position: | chr20:35973754-35973311 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 203, 63 |
| Conread position: | 51-494 |
| Cow position: | chr20:22718026-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 52-566 |
| Cow position: | chr20:9954301-9953807 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 53-579 |
| Cow position: | chr20:21913982-21914520 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 120-574 |
| Cow position: | chr20:35119296-35119757 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 137-420 |
| Cow position: | chr20:19192389-19192093 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 163-581 |
| Cow position: | chr20:11679345-11678916 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 331 |
| Conread position: | 223-579 |
| Cow position: | chr20:29948343-29948691 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 232-579 |
| Cow position: | chr20:8004386-8004034 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 263-587 |
| Cow position: | chr20:15947523-15947177 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 238 |
| Conread position: | 285-579 |
| Cow position: | chr20:25960995-25961295 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 204 |
| Conread position: | 299-579 |
| Cow position: | chr20:3032976-3033253 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 309-579 |
| Cow position: | chr20:13680134-13679866 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 346-579 |
| Cow position: | chr20:3684524-3684296 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 390-563 |
| Cow position: | chr20:10841243-10841069 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 91 |
Show alignments to all cow chromosomes.