Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-151 |
| Cow position: | chr21:2542149-2541998 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 1-563 |
| Cow position: | chr21:2769729-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 1-566 |
| Cow position: | chr21:4183265-4183818 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 133 |
| Conread position: | 1-568 |
| Cow position: | chr21:7267814-7267244 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 1-568 |
| Cow position: | chr21:23860501-23861089 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 163 |
| Conread position: | 1-573 |
| Cow position: | chr21:10566397-10566978 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 158 |
| Conread position: | 1-573 |
| Cow position: | chr21:48115826-48116406 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 152 |
| Conread position: | 2-533 |
| Cow position: | chr21:21948097-21947536 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 2-579 |
| Cow position: | chr21:2789260-2788681 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 168 |
| Conread position: | 3-360 |
| Cow position: | chr21:2501660-2502024 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 6-579 |
| Cow position: | chr21:1292447-1291880 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 7-586 |
| Cow position: | chr21:3426217-3426803 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 16-169 |
| Cow position: | chr21:41952919-41953073 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 90, 133 |
| Conread position: | 16-579 |
| Cow position: | chr21:4590220-4589680 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 17-173 |
| Cow position: | chr21:19609854-19610010 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 131 |
| Conread position: | 17-279 |
| Cow position: | chr21:5016292-5016023 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 90, 142 |
| Conread position: | 17-392 |
| Cow position: | chr21:17572668-17573047 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 220, 65 |
| Conread position: | 17-466 |
| Cow position: | chr21:27708500-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-574 |
| Cow position: | chr21:12056259-12055695 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-579 |
| Cow position: | chr21:993285-992718 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 370 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 17-579 |
| Cow position: | chr21:2510395-2510962 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 17-579 |
| Cow position: | chr21:4090388-4090960 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 476 |
| Conread position: | 17-579 |
| Cow position: | chr21:11453915-11453345 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 17-579 |
| Cow position: | chr21:26638718-26638154 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 17-579 |
| Cow position: | chr21:37044660-37045221 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 44 |
| Conread position: | 17-579 |
| Cow position: | chr21:39424808-39425374 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 113 |
| Conread position: | 17-579 |
| Cow position: | chr21:46915330-46915899 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 18-318 |
| Cow position: | chr21:34055174-34054870 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 18-579 |
| Cow position: | chr21:2476768-2476216 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 43 |
| Conread position: | 20-183 |
| Cow position: | chr21:23811654-23811814 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 20-546 |
| Cow position: | chr21:34259471-34258953 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 128 |
| Conread position: | 21-420 |
| Cow position: | chr21:1190784-1191202 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 21-533 |
| Cow position: | chr21:33251134-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-573 |
| Cow position: | chr21:3778510-3779071 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 21-574 |
| Cow position: | chr21:30600171-30599620 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 25 |
| Conread position: | 21-579 |
| Cow position: | chr21:145662-146234 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr21:10849822-10850391 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr21:31559905-31559345 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 110 |
| Conread position: | 22-568 |
| Cow position: | chr21:47947861-47948409 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 23-164 |
| Cow position: | chr21:29086236-29086378 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 23-494 |
| Cow position: | chr21:3615039-3615519 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 23-568 |
| Cow position: | chr21:4222951-4222388 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 479 |
| Conread position: | 23-579 |
| Cow position: | chr21:34292762-34293327 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 23-585 |
| Cow position: | chr21:13124252-13123689 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 67 |
| Conread position: | 27-309 |
| Cow position: | chr21:40272062-40271785 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 27-497 |
| Cow position: | chr21:26819265-26818791 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 121 |
| Conread position: | 27-568 |
| Cow position: | chr21:216061-216588 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 27-569 |
| Cow position: | chr21:2883986-2883447 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 28-352 |
| Cow position: | chr21:4083404-4083732 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 30-525 |
| Cow position: | chr21:2716918-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 30-538 |
| Cow position: | chr21:358772-359290 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 73 |
| Conread position: | 30-563 |
| Cow position: | chr21:47939230-47939771 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 118 |
| Conread position: | 30-566 |
| Cow position: | chr21:4076598-4077137 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 329 |
| Conread position: | 30-574 |
| Cow position: | chr21:2530375-2529821 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 134 |
| Conread position: | 30-579 |
| Cow position: | chr21:35596132-35596679 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 31-560 |
| Cow position: | chr21:2415997-2416520 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 31-579 |
| Cow position: | chr21:11505339-11505898 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 117 |
| Conread position: | 31-585 |
| Cow position: | chr21:25992866-25992317 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 356 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 36-550 |
| Cow position: | chr21:9891370-9891874 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 71 |
| Conread position: | 36-568 |
| Cow position: | chr21:6699804-6699278 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 355 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 71, 95 |
| Conread position: | 41-550 |
| Cow position: | chr21:2674875-2674345 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 107 |
| Conread position: | 49-574 |
| Cow position: | chr21:30561572-30562108 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 142-576 |
| Cow position: | chr21:2541552-2541104 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 303 |
| Conread position: | 147-374 |
| Cow position: | chr21:27625-27851 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 149-566 |
| Cow position: | chr21:20744879-20744467 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 98, 110 |
| Conread position: | 178-579 |
| Cow position: | chr21:4456729-4457137 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 223-573 |
| Cow position: | chr21:26823283-26822927 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 107, 78 |
| Conread position: | 228-561 |
| Cow position: | chr21:21914237-21914579 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 14, 263 |
| Conread position: | 241-563 |
| Cow position: | chr21:23811842-23812170 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 222 |
| Conread position: | 257-579 |
| Cow position: | chr21:6339549-6339877 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 232 |
| Conread position: | 261-537 |
| Cow position: | chr21:27282373-27282663 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 238 |
| Conread position: | 270-579 |
| Cow position: | chr21:8678364-8678049 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 219 |
| Conread position: | 328-573 |
| Cow position: | chr21:40271615-40271372 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 368-579 |
| Cow position: | chr21:3798269-3798060 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 369-573 |
| Cow position: | chr21:18820313-18820123 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 417-573 |
| Cow position: | chr21:1191313-1191468 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 443-579 |
| Cow position: | chr21:26650218-26650352 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.