Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-210
Cow position: chr22:12732511-12732313 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 130

Conread position: 1-359
Cow position: chr22:44456857-44457233 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 154

Conread position: 1-472
Cow position: chr22:1285383-1284900 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 148

Conread position: 1-524
Cow position: chr22:1321173-1321690 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 113

Conread position: 1-567
Cow position: chr22:7277069-7277647 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 150

Conread position: 1-567
Cow position: chr22:37073599-37073087 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 89

Conread position: 1-579
Cow position: chr22:693187-693764 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 177

Conread position: 1-579
Cow position: chr22:21588884-21589462 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 19

Conread position: 1-579
Cow position: chr22:42990721-42991310 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 153

Conread position: 2-242
Cow position: chr22:526358-526119 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 105, 152

Conread position: 2-321
Cow position: chr22:309275-309590 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 174, 6

Conread position: 2-407
Cow position: chr22:10077201-10076787 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 65

Conread position: 2-563
Cow position: chr22:3307160-3306622 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 24

Conread position: 2-579
Cow position: chr22:36861977-36861392 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 7

Conread position: 2-579
Cow position: chr22:41420134-41419556 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 3-186
Cow position: chr22:36180696-36180879 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 123

Conread position: 3-328
Cow position: chr22:46585761-46585424 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 147

Conread position: 3-538
Cow position: chr22:1293941-1293399 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 93

Conread position: 3-567
Cow position: chr22:15850896-15851455 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 98

Conread position: 6-341
Cow position: chr22:13772350-13772681 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 110

Conread position: 6-579
Cow position: chr22:6504100-6503539 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 63

Conread position: 6-579
Cow position: chr22:11030534-11031098 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 14

Conread position: 7-165
Cow position: chr22:40380755-40380911 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 97, 139

Conread position: 8-198
Cow position: chr22:36274341-36274524 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 100

Conread position: 8-579
Cow position: chr22:1318954-1319535 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 19

Conread position: 9-250
Cow position: chr22:42771108-42771346 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 18

Conread position: 10-572
Cow position: chr22:46636135-46635583 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 24

Conread position: 16-395
Cow position: chr22:118252-117858 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 133

Conread position: 16-563
Cow position: chr22:8136641-8136082 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 146

Conread position: 16-565
Cow position: chr22:1270940-1270408 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 30

Conread position: 16-566
Cow position: chr22:44353383-44352832 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 131

Conread position: 17-187
Cow position: chr22:18930143-18930313 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 90, 114

Conread position: 17-309
Cow position: chr22:10910286-10909995 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 89, 131

Conread position: 17-480
Cow position: chr22:6984820-6985296 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-540
Cow position: chr22:327583-327060 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-555
Cow position: chr22:37265017-37265569 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 479

Conread position: 17-567
Cow position: chr22:27310211-27309647 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr22:3278784-3278216 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 114

Conread position: 17-579
Cow position: chr22:5233731-5233167 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 114

Conread position: 17-579
Cow position: chr22:10546216-10546783 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 138

Conread position: 17-579
Cow position: chr22:24949395-24949968 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr22:44370048-44369486 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 110

Conread position: 17-579
Cow position: chr22:44489452-44490025 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 135

Conread position: 18-353
Cow position: chr22:18476194-18475852 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 111

Conread position: 18-574
Cow position: chr22:5307683-5308237 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 131

Conread position: 21-573
Cow position: chr22:561129-560574 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 37

Conread position: 21-573
Cow position: chr22:19144128-19143567 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr22:39469947-39469391 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 26

Conread position: 21-573
Cow position: chr22:44933549-44934111 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr22:17329167-17328601 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 41

Conread position: 21-579
Cow position: chr22:31312914-31313479 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr22:31335463-31334897 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr22:35672786-35672218 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 127

Conread position: 22-579
Cow position: chr22:34167902-34168470 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 132

Conread position: 27-349
Cow position: chr22:44395358-44395691 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 121

Conread position: 27-579
Cow position: chr22:16200070-16200612 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 121

Conread position: 28-462
Cow position: chr22:302407-301966 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 286
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 116

Conread position: 28-579
Cow position: chr22:37131227-37131782 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 127

Conread position: 30-278
Cow position: chr22:36534386-36534132 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 30-579
Cow position: chr22:5672317-5672875 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 118

Conread position: 31-573
Cow position: chr22:33350747-33351300 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 19

Conread position: 31-606
Cow position: chr22:46852922-46853510 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 117

Conread position: 32-579
Cow position: chr22:39882592-39882038 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 116

Conread position: 35-308
Cow position: chr22:37067325-37067052 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 73, 52

Conread position: 38-559
Cow position: chr22:293566-293042 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 348
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 69, 52

Conread position: 41-579
Cow position: chr22:18816792-18816247 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 113

Conread position: 41-579
Cow position: chr22:36736364-36736896 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 106

Conread position: 54-586
Cow position: chr22:158312-157762 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 94

Conread position: 64-579
Cow position: chr22:32485715-32485214 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 70

Conread position: 76-532
Cow position: chr22:15957064-15956608 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 307
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 58, 31

Conread position: 82-347
Cow position: chr22:4065271-4065549 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 49

Conread position: 83-579
Cow position: chr22:1878425-1878931 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 65

Conread position: 85-579
Cow position: chr22:5933348-5932858 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 170

Conread position: 116-573
Cow position: chr22:36267042-36267492 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 309
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 91, 31

Conread position: 132-579
Cow position: chr22:11782851-11782390 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 298
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 48

Conread position: 139-561
Cow position: chr22:34598364-34598787 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 86

Conread position: 178-579
Cow position: chr22:27283776-27284169 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 286
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 74, 9

Conread position: 181-579
Cow position: chr22:36183488-36183895 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 28

Conread position: 184-579
Cow position: chr22:27386699-27386293 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 310

Conread position: 190-574
Cow position: chr22:8149797-8149419 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 255
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 7

Conread position: 219-579
Cow position: chr22:536868-537239 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 275

Conread position: 222-579
Cow position: chr22:13917277-13917641 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 217

Conread position: 223-566
Cow position: chr22:44609384-44609721 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 14

Conread position: 235-574
Cow position: chr22:15314160-15313819 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 10

Conread position: 235-590
Cow position: chr22:12732056-12731702 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 238
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 8

Conread position: 239-573
Cow position: chr22:525883-525561 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 14

Conread position: 268-579
Cow position: chr22:34606884-34607194 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 55, 146

Conread position: 277-579
Cow position: chr22:46547834-46547526 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 211

Conread position: 283-484
Cow position: chr22:17895410-17895614 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 171

Conread position: 283-579
Cow position: chr22:36533901-36533605 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 164

Conread position: 295-567
Cow position: chr22:1048269-1048534 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 72, 29

Conread position: 309-530
Cow position: chr22:45880240-45880023 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 74

Conread position: 328-573
Cow position: chr22:46581696-46581455 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 29, 70

Conread position: 328-579
Cow position: chr22:8874883-8875127 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 53

Conread position: 328-579
Cow position: chr22:20240952-20240703 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 334-520
Cow position: chr22:13772873-13773053 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 0

Conread position: 335-579
Cow position: chr22:10909942-10909695 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 99, 151

Conread position: 342-579
Cow position: chr22:6020565-6020800 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 0

Conread position: 370-573
Cow position: chr22:44396382-44396582 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 110, 0

Conread position: 378-585
Cow position: chr22:309717-309922 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 404-563
Cow position: chr22:1860846-1860689 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.