Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-200 |
| Cow position: | chr24:17314679-17314479 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 148 |
| Conread position: | 1-229 |
| Cow position: | chr24:29186437-29186669 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 1-279 |
| Cow position: | chr24:37216362-37216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 147 |
| Conread position: | 1-314 |
| Cow position: | chr24:32125859-32125559 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 266, 103 |
| Conread position: | 1-550 |
| Cow position: | chr24:14391086-14390540 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 147 |
| Conread position: | 1-550 |
| Cow position: | chr24:32330978-32331511 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 1-563 |
| Cow position: | chr24:12798115-12797560 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 129 |
| Conread position: | 1-568 |
| Cow position: | chr24:38635378-38635967 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 197 |
| Conread position: | 1-573 |
| Cow position: | chr24:4415894-4415311 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 8 |
| Conread position: | 1-573 |
| Cow position: | chr24:12085835-12086416 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 153 |
| Conread position: | 1-573 |
| Cow position: | chr24:39678080-39678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 106 |
| Conread position: | 2-568 |
| Cow position: | chr24:36707493-36708059 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 2-579 |
| Cow position: | chr24:6144995-6145592 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 3-452 |
| Cow position: | chr24:12289080-12288630 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 3-567 |
| Cow position: | chr24:6335334-6335901 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 3-571 |
| Cow position: | chr24:6351829-6352401 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 3-579 |
| Cow position: | chr24:33933004-33933590 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 6-411 |
| Cow position: | chr24:13181698-13181293 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 9-279 |
| Cow position: | chr24:35991008-35990743 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 97, 71 |
| Conread position: | 9-579 |
| Cow position: | chr24:35841959-35841399 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 87 |
| Conread position: | 11-566 |
| Cow position: | chr24:12236707-12237265 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 137 |
| Conread position: | 16-348 |
| Cow position: | chr24:12207794-12208127 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 17-263 |
| Cow position: | chr24:5993319-5993076 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 113 |
| Conread position: | 17-279 |
| Cow position: | chr24:20267869-20268136 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 17-390 |
| Cow position: | chr24:13021323-13021705 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 138 |
| Conread position: | 17-512 |
| Cow position: | chr24:6645069-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-568 |
| Cow position: | chr24:12114379-12113833 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 139 |
| Conread position: | 17-574 |
| Cow position: | chr24:6025445-6024877 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-579 |
| Cow position: | chr24:22792828-22793396 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-580 |
| Cow position: | chr24:16085026-16084435 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 18-579 |
| Cow position: | chr24:44017198-44017770 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 130 |
| Conread position: | 21-569 |
| Cow position: | chr24:19833039-19833599 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-574 |
| Cow position: | chr24:148936-148400 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 132 |
| Conread position: | 21-574 |
| Cow position: | chr24:14384954-14384396 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 103 |
| Conread position: | 23-280 |
| Cow position: | chr24:37301416-37301162 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 23-579 |
| Cow position: | chr24:6537227-6537765 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 24-579 |
| Cow position: | chr24:6083674-6084241 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 125 |
| Conread position: | 27-563 |
| Cow position: | chr24:13187856-13188393 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 100 |
| Conread position: | 27-566 |
| Cow position: | chr24:1447242-1447767 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 27-569 |
| Cow position: | chr24:9189069-9188517 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 116 |
| Conread position: | 27-574 |
| Cow position: | chr24:16649633-16649098 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 27-579 |
| Cow position: | chr24:6433899-6434464 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 124 |
| Conread position: | 27-579 |
| Cow position: | chr24:12131820-12131262 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 127 |
| Conread position: | 27-579 |
| Cow position: | chr24:33739681-33739113 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 29-568 |
| Cow position: | chr24:40654072-40654599 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 358 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 78, 100 |
| Conread position: | 30-199 |
| Cow position: | chr24:14583763-14583930 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 118 |
| Conread position: | 30-525 |
| Cow position: | chr24:17187210-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 30-579 |
| Cow position: | chr24:35838962-35838392 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 31-573 |
| Cow position: | chr24:12161545-12162094 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 33-579 |
| Cow position: | chr24:12485650-12485093 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 115 |
| Conread position: | 34-510 |
| Cow position: | chr24:37321927-37321445 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 93 |
| Conread position: | 36-519 |
| Cow position: | chr24:7060777-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 41-524 |
| Cow position: | chr24:15392621-15392155 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 105 |
| Conread position: | 41-563 |
| Cow position: | chr24:36560396-36559879 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 107 |
| Conread position: | 50-568 |
| Cow position: | chr24:14873658-14873137 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 272 |
| Conread position: | 51-457 |
| Cow position: | chr24:13531849-13531432 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 225 |
| Conread position: | 84-568 |
| Cow position: | chr24:12567973-12568445 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 105-514 |
| Cow position: | chr24:2635860-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 105-579 |
| Cow position: | chr24:8029891-8030375 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 130-572 |
| Cow position: | chr24:12224715-12224245 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 198-579 |
| Cow position: | chr24:14584927-14585300 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 223-579 |
| Cow position: | chr24:22951993-22952360 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 271 |
| Conread position: | 232-579 |
| Cow position: | chr24:12335920-12335550 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 235-574 |
| Cow position: | chr24:9092399-9092063 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 245-579 |
| Cow position: | chr24:40548760-40549098 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 206 |
| Conread position: | 276-586 |
| Cow position: | chr24:37216919-37217231 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 213 |
| Conread position: | 313-559 |
| Cow position: | chr24:6660650-6660405 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 335-573 |
| Cow position: | chr24:17696985-17696755 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 397-550 |
| Cow position: | chr24:7091553-7091402 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 401-569 |
| Cow position: | chr24:29187331-29187497 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 405-579 |
| Cow position: | chr24:13524157-13524328 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.