Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-189
Cow position: chr28:2990364-2990184 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 106, 67

Conread position: 1-387
Cow position: chr28:1168574-1168174 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 157

Conread position: 1-428
Cow position: chr28:29819161-29819602 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 156

Conread position: 1-431
Cow position: chr28:22827654-22828085 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 297
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 132

Conread position: 1-557
Cow position: chr28:26426671-26426117 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 20

Conread position: 1-573
Cow position: chr28:1387796-1387223 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 147

Conread position: 1-573
Cow position: chr28:14706081-14705494 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 157

Conread position: 1-573
Cow position: chr28:22261561-22260974 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 157

Conread position: 1-579
Cow position: chr28:10582391-10581804 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 153

Conread position: 1-579
Cow position: chr28:21325386-21325973 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 88

Conread position: 1-586
Cow position: chr28:5812307-5812881 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 25

Conread position: 2-295
Cow position: chr28:18181753-18181466 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 124, 105

Conread position: 2-355
Cow position: chr28:18089409-18089046 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 23, 97

Conread position: 2-358
Cow position: chr28:5796421-5796779 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 146

Conread position: 2-579
Cow position: chr28:10619505-10618932 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 36

Conread position: 4-579
Cow position: chr28:9155680-9155097 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 13

Conread position: 6-173
Cow position: chr28:24667213-24667380 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 100, 142

Conread position: 6-189
Cow position: chr28:5752561-5752378 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 100, 143

Conread position: 6-329
Cow position: chr28:13522325-13522660 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 144

Conread position: 6-566
Cow position: chr28:7816846-7817373 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 11

Conread position: 6-569
Cow position: chr28:12149920-12150483 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 149

Conread position: 7-573
Cow position: chr28:2591526-2592091 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 9-579
Cow position: chr28:8721842-8721265 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 275

Conread position: 16-210
Cow position: chr28:7790624-7790436 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 0

Conread position: 17-202
Cow position: chr28:489100-489285 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 90, 131

Conread position: 17-559
Cow position: chr28:15950591-15951142 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-568
Cow position: chr28:15920849-15920294 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 17-573
Cow position: chr28:1952754-1953306 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 21

Conread position: 17-579
Cow position: chr28:6780717-6780151 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 147

Conread position: 18-579
Cow position: chr28:21358632-21359184 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 75

Conread position: 21-174
Cow position: chr28:15378400-15378247 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 84, 128

Conread position: 21-183
Cow position: chr28:1504255-1504417 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 81, 128

Conread position: 21-183
Cow position: chr28:15035802-15035640 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 85, 128

Conread position: 21-189
Cow position: chr28:7739868-7740037 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 86, 0

Conread position: 21-235
Cow position: chr28:5115456-5115252 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 85, 39

Conread position: 21-387
Cow position: chr28:34593457-34593832 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 21-537
Cow position: chr28:5565475-5566003 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-563
Cow position: chr28:18520847-18520297 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 128

Conread position: 21-567
Cow position: chr28:8378180-8378739 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 471

Conread position: 21-573
Cow position: chr28:2083218-2083773 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr28:17388095-17388658 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr28:17667898-17667337 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr28:782011-782577 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 129

Conread position: 21-579
Cow position: chr28:3193161-3192609 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 110

Conread position: 21-579
Cow position: chr28:13459588-13460152 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 110

Conread position: 21-579
Cow position: chr28:32792765-32792197 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr28:33251958-33252496 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 23-579
Cow position: chr28:7900976-7901537 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 23-579
Cow position: chr28:9953751-9954315 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 124

Conread position: 27-579
Cow position: chr28:13441257-13440694 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 121

Conread position: 27-579
Cow position: chr28:14750168-14750729 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 121

Conread position: 30-501
Cow position: chr28:15681516-15682009 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 127

Conread position: 31-543
Cow position: chr28:15585021-15585528 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 335
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 75, 117

Conread position: 32-320
Cow position: chr28:3774212-3773919 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 22

Conread position: 36-273
Cow position: chr28:26007660-26007900 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 71, 188

Conread position: 39-573
Cow position: chr28:1815235-1814691 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 115

Conread position: 40-448
Cow position: chr28:17330899-17330473 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 184

Conread position: 41-189
Cow position: chr28:9137394-9137246 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 66, 107

Conread position: 41-466
Cow position: chr28:32331764-32331335 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 278
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 93, 61

Conread position: 64-579
Cow position: chr28:7821922-7822440 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 63

Conread position: 71-579
Cow position: chr28:24587100-24587617 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 60

Conread position: 81-319
Cow position: chr28:14491139-14491374 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 26, 59

Conread position: 82-573
Cow position: chr28:7001663-7002166 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 72

Conread position: 107-579
Cow position: chr28:4381108-4380662 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 40

Conread position: 168-573
Cow position: chr28:1504616-1505028 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 322

Conread position: 178-540
Cow position: chr28:24652062-24652427 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 67, 239

Conread position: 179-386
Cow position: chr28:5752105-5751884 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 179-579
Cow position: chr28:15378220-15377809 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 313

Conread position: 180-401
Cow position: chr28:2989909-2989682 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 106

Conread position: 206-568
Cow position: chr28:24667380-24667751 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 57

Conread position: 235-568
Cow position: chr28:12410377-12410052 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 10

Conread position: 235-579
Cow position: chr28:5114967-5114629 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 10

Conread position: 238-579
Cow position: chr28:17935200-17934855 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 224
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 7

Conread position: 241-527
Cow position: chr28:6657470-6657175 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 199
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 173

Conread position: 248-579
Cow position: chr28:7740340-7740668 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 23

Conread position: 253-420
Cow position: chr28:15035646-15035471 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 265-568
Cow position: chr28:7790435-7790115 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 235

Conread position: 283-563
Cow position: chr28:9137168-9136884 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 163

Conread position: 299-579
Cow position: chr28:2724988-2724708 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 184

Conread position: 309-484
Cow position: chr28:22233776-22233600 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 134

Conread position: 370-579
Cow position: chr28:5751730-5751524 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 5, 0

Conread position: 377-569
Cow position: chr28:34593961-34594151 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 104, 0

Conread position: 377-573
Cow position: chr28:1167899-1167705 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 167, 89

Conread position: 407-573
Cow position: chr28:29819745-29819910 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 19, 80

Conread position: 431-568
Cow position: chr28:2989679-2989546 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 431-579
Cow position: chr28:1931948-1931802 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 432-582
Cow position: chr28:5797470-5797617 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.