Cow genome map
| Conread name: | LyN1-MLN01F050049 |
| Conread position: | 1-128 |
| Cow position: | chr29:42649923-42650051 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-128 |
| Cow position: | chr29:42801783-42801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-150 |
| Cow position: | chr29:8663837-8663987 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-535 |
| Cow position: | chr29:21246124-21246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 1-550 |
| Cow position: | chr29:803773-803232 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 234 |
| Conread position: | 1-573 |
| Cow position: | chr29:48920-48336 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 152 |
| Conread position: | 1-573 |
| Cow position: | chr29:19652664-19653250 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 1-573 |
| Cow position: | chr29:30811107-30811670 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 1-573 |
| Cow position: | chr29:45459280-45459855 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 1-574 |
| Cow position: | chr29:25932988-25932401 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 1-579 |
| Cow position: | chr29:5957163-5957752 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 147 |
| Conread position: | 2-404 |
| Cow position: | chr29:12796903-12796498 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 4-573 |
| Cow position: | chr29:2689469-2690044 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 5-579 |
| Cow position: | chr29:30108674-30109256 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 380 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 213, 31 |
| Conread position: | 6-165 |
| Cow position: | chr29:21431776-21431617 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 142 |
| Conread position: | 7-579 |
| Cow position: | chr29:10848535-10847944 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 21 |
| Conread position: | 7-579 |
| Cow position: | chr29:11048851-11049426 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 7-586 |
| Cow position: | chr29:35196256-35196819 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 9-351 |
| Cow position: | chr29:9644153-9643812 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 139 |
| Conread position: | 9-574 |
| Cow position: | chr29:2750813-2750274 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 16-573 |
| Cow position: | chr29:38226570-38227122 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 96 |
| Conread position: | 16-579 |
| Cow position: | chr29:104160-104715 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 128 |
| Conread position: | 16-580 |
| Cow position: | chr29:15950602-15950042 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 128 |
| Conread position: | 17-407 |
| Cow position: | chr29:31121384-31121784 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 17-543 |
| Cow position: | chr29:28061090-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 131 |
| Conread position: | 17-569 |
| Cow position: | chr29:15895270-15894712 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 38 |
| Conread position: | 17-573 |
| Cow position: | chr29:15969565-15969009 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 73 |
| Conread position: | 17-574 |
| Cow position: | chr29:611037-610469 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 335 |
| Conread position: | 17-579 |
| Cow position: | chr29:27250757-27250194 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 126 |
| Conread position: | 21-250 |
| Cow position: | chr29:45587718-45587489 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 21-569 |
| Cow position: | chr29:26165239-26164684 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 21-572 |
| Cow position: | chr29:43322139-43322701 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-573 |
| Cow position: | chr29:6266912-6266359 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-573 |
| Cow position: | chr29:23975413-23975982 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 21-573 |
| Cow position: | chr29:34800222-34799666 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 21-573 |
| Cow position: | chr29:40503399-40502838 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 21-579 |
| Cow position: | chr29:2099425-2099993 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 21-579 |
| Cow position: | chr29:2841785-2841225 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr29:7431636-7431067 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr29:10824376-10823821 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 21-579 |
| Cow position: | chr29:19623664-19623099 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 21-579 |
| Cow position: | chr29:39080126-39079564 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 22-579 |
| Cow position: | chr29:10648664-10648103 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 132 |
| Conread position: | 22-579 |
| Cow position: | chr29:32539392-32539958 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 131 |
| Conread position: | 23-579 |
| Cow position: | chr29:16022128-16022678 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 23-579 |
| Cow position: | chr29:16769718-16770271 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 111 |
| Conread position: | 23-579 |
| Cow position: | chr29:27041178-27040621 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 125 |
| Conread position: | 23-587 |
| Cow position: | chr29:21543790-21543213 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 125 |
| Conread position: | 27-230 |
| Cow position: | chr29:34752100-34751904 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 27-243 |
| Cow position: | chr29:14368532-14368749 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 27-579 |
| Cow position: | chr29:16109314-16109875 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 342 |
| Conread position: | 27-579 |
| Cow position: | chr29:20250745-20251308 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 128 |
| Conread position: | 30-579 |
| Cow position: | chr29:43366402-43365844 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 31-484 |
| Cow position: | chr29:32576632-32576176 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 299 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 31-568 |
| Cow position: | chr29:4635371-4634839 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 31-579 |
| Cow position: | chr29:32315632-32316189 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 35-309 |
| Cow position: | chr29:2468346-2468057 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 41-579 |
| Cow position: | chr29:1714860-1715390 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 123 |
| Conread position: | 43-579 |
| Cow position: | chr29:7840400-7840944 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 112 |
| Conread position: | 91-579 |
| Cow position: | chr29:35296527-35297022 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 129-579 |
| Cow position: | chr29:11841373-11841810 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 130-309 |
| Cow position: | chr29:42801870-42802056 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 136-519 |
| Cow position: | chr29:31180818-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 358 |
| Conread position: | 139-527 |
| Cow position: | chr29:21427357-21426962 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 333 |
| Conread position: | 139-574 |
| Cow position: | chr29:13853322-13852882 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 142-452 |
| Cow position: | chr29:34609247-34608934 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 142-540 |
| Cow position: | chr29:39313888-39313482 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 5 |
| Conread position: | 156-309 |
| Cow position: | chr29:42650039-42650196 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 169-579 |
| Cow position: | chr29:17662649-17663052 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 206 |
| Conread position: | 196-546 |
| Cow position: | chr29:11855354-11855710 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 228-579 |
| Cow position: | chr29:22966459-22966111 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 231-579 |
| Cow position: | chr29:27981124-27980769 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 259 |
| Conread position: | 255-579 |
| Cow position: | chr29:19884887-19885218 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 235 |
| Conread position: | 283-517 |
| Cow position: | chr29:5983333-5983094 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 30, 205 |
| Conread position: | 299-445 |
| Cow position: | chr29:43791049-43791196 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 299-579 |
| Cow position: | chr29:670188-669909 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 184 |
| Conread position: | 312-574 |
| Cow position: | chr29:45587464-45587217 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 312-579 |
| Cow position: | chr29:14585809-14586070 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 171 |
| Conread position: | 332-579 |
| Cow position: | chr29:18857041-18856796 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 368-566 |
| Cow position: | chr29:9643819-9643625 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 368-579 |
| Cow position: | chr29:2466397-2466186 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 139, 123 |
| Conread position: | 368-579 |
| Cow position: | chr29:13582011-13582217 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 375-573 |
| Cow position: | chr29:12796414-12796223 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 409-579 |
| Cow position: | chr29:410547-410377 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 79 |
Show alignments to all cow chromosomes.